메뉴 건너뛰기




Volumn 48, Issue 1-2, 2008, Pages 83-88

Analysis of the Methanobrevibacter ruminantium draft genome: Understanding methanogen biology to inhibit their action in the rumen

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENOME; GREENHOUSE GAS; METHANOGENESIS; METHANOGENIC BACTERIUM; RUMINANT;

EID: 37649025331     PISSN: 08161089     EISSN: None     Source Type: Journal    
DOI: 10.1071/EA07269     Document Type: Conference Paper
Times cited : (19)

References (27)
  • 1
    • 0038636966 scopus 로고    scopus 로고
    • GAMOLA: A new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes
    • doi: 10.1089/153623103322246557
    • Altermann E, Klaenhammer TR (2003) GAMOLA: a new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes. OMICS 7, 161-169. doi: 10.1089/153623103322246557
    • (2003) OMICS , vol.7 , pp. 161-169
    • Altermann, E.1    Klaenhammer, T.R.2
  • 2
    • 25444482839 scopus 로고    scopus 로고
    • PathwayVoyager: Pathway mapping using theKyoto Encyclopedia of Genes and Genomes (KEGG) database
    • doi: 10.1186/1471-2164-6-60
    • Altermann E, Klaenhammer TR (2005) PathwayVoyager: pathway mapping using theKyoto Encyclopedia of Genes and Genomes (KEGG) database. BMC Genomics 6, 60-66. doi: 10.1186/1471-2164-6-60
    • (2005) BMC Genomics , vol.6 , pp. 60-66
    • Altermann, E.1    Klaenhammer, T.R.2
  • 6
    • 0001973467 scopus 로고    scopus 로고
    • Carbohydrate-active enzymes: An integrated database approach
    • Eds HJ Gilbert, G Davies, B Henrissat, B Svensson) pp, The Royal Society of Chemistry, Cambridge Available at, Verified 12 November 2007
    • Coutinho PM, Henrissat B (1999) Carbohydrate-active enzymes: an integrated database approach. In 'Recent advances in carbohydrate bioengineering'. (Eds HJ Gilbert, G Davies, B Henrissat, B Svensson) pp. 3-12. (The Royal Society of Chemistry, Cambridge) Available at http://www.cazy.org/ [Verified 12 November 2007].
    • (1999) Recent advances in carbohydrate bioengineering , pp. 3-12
    • Coutinho, P.M.1    Henrissat, B.2
  • 8
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • doi: 10.1126/science. 7542800
    • Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512. doi: 10.1126/science. 7542800
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3    Clayton, R.A.4    Kirkness, E.F.5
  • 9
    • 30744456055 scopus 로고    scopus 로고
    • The genome sequence of Methanosphaera stadtmanae revealswhy this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis
    • doi: 10.1128/JB.188.2.642-658.2006
    • Fricke WF, Seedorf H, Henne A, Kruer M, Liesegang H, Hedderich R, Gottschalk G, Thauer RK (2006) The genome sequence of Methanosphaera stadtmanae revealswhy this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis. Journal of Bacteriology 188, 642-658. doi: 10.1128/JB.188.2.642-658.2006
    • (2006) Journal of Bacteriology , vol.188 , pp. 642-658
    • Fricke, W.F.1    Seedorf, H.2    Henne, A.3    Kruer, M.4    Liesegang, H.5    Hedderich, R.6    Gottschalk, G.7    Thauer, R.K.8
  • 10
    • 33744941078 scopus 로고    scopus 로고
    • The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
    • doi: 10.1007/s00239-005-0223-z
    • Godde JS, Bickerton A (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. Journal of Molecular Evolution 62, 718-729. doi: 10.1007/s00239-005-0223-z
    • (2006) Journal of Molecular Evolution , vol.62 , pp. 718-729
    • Godde, J.S.1    Bickerton, A.2
  • 11
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • doi: 10.1371/journal.pcbi.0010060
    • Haft DH, Selengut J, Mongodin EF, Nelson KE (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Computational Biology 1, e60. doi: 10.1371/journal.pcbi.0010060
    • (2005) PLoS Computational Biology , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 12
    • 0036408356 scopus 로고    scopus 로고
    • Identification of a novel family of sequence repeats among prokaryotes
    • doi: 10.1089/15362310252780816
    • Jansen R, van Embden JD, Gaastra W, Schouls LM (2002a) Identification of a novel family of sequence repeats among prokaryotes. OMICS 6, 23-33. doi: 10.1089/15362310252780816
    • (2002) OMICS , vol.6 , pp. 23-33
    • Jansen, R.1    van Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 13
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • doi: 10.1046/j.1365-2958. 2002.02839.x
    • Jansen R, van Embden JD, Gaastra W, Schouls LM (2002b) Identification of genes that are associated with DNA repeats in prokaryotes. Molecular Microbiology 43, 1565-1575. doi: 10.1046/j.1365-2958. 2002.02839.x
    • (2002) Molecular Microbiology , vol.43 , pp. 1565-1575
    • Jansen, R.1    van Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 14
    • 0033393081 scopus 로고    scopus 로고
    • Three views of microbial genomes
    • doi: 10.1016/S0923-2508(99) 00116-3
    • Jensen LJ, Friis C, Ussery DW (1999) Three views of microbial genomes. Research in Microbiology 150, 773-777. doi: 10.1016/S0923-2508(99) 00116-3
    • (1999) Research in Microbiology , vol.150 , pp. 773-777
    • Jensen, L.J.1    Friis, C.2    Ussery, D.W.3
  • 15
    • 0025327665 scopus 로고
    • Effect of Methanobrevibacter smithii on xylanolytic activity of anaerobic ruminal fungi
    • Joblin KN, Naylor GE, Williams AG (1990) Effect of Methanobrevibacter smithii on xylanolytic activity of anaerobic ruminal fungi. Applied and Environmental Microbiology 56, 2287-2295.
    • (1990) Applied and Environmental Microbiology , vol.56 , pp. 2287-2295
    • Joblin, K.N.1    Naylor, G.E.2    Williams, A.G.3
  • 17
    • 0033066718 scopus 로고    scopus 로고
    • REPuter: Fast computation of maximal repeats in complete genomes
    • doi: 10.1093/bioinformatics/15.5.426
    • Kurtz S, Schleiermacher C (1999) REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics (Oxford, England) 15, 426-427. doi: 10.1093/bioinformatics/15.5.426
    • (1999) Bioinformatics (Oxford, England) , vol.15 , pp. 426-427
    • Kurtz, S.1    Schleiermacher, C.2
  • 18
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • doi: 10.1093/nar/25.5.955
    • Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Research 25, 955-964. doi: 10.1093/nar/25.5.955
    • (1997) Nucleic Acids Research , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 19
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryoticRNAi, and hypothetical mechanisms of action
    • doi: 10.1186/1745-6150-1-7
    • Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryoticRNAi, and hypothetical mechanisms of action. Biology Direct 1, 7-32. doi: 10.1186/1745-6150-1-7
    • (2006) Biology Direct , vol.1 , pp. 7-32
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 20
    • 37649002304 scopus 로고    scopus 로고
    • New Zealand's greenhouse gas inventory 1990-2004
    • Ministry for the Environment , Ministry for the Environment, New Zealand. Available at, Verified 12 November
    • Ministry for the Environment (2006) New Zealand's greenhouse gas inventory 1990-2004. The National Inventory Report and Common Reporting Format. Ministry for the Environment, New Zealand. Available at http://www.mfe.govt.nz/ publications/climate/nir-apr06/nirapr06.pdf [Verified 12 November 2007].
    • (2006) The National Inventory Report and Common Reporting Format
  • 21
    • 34347244108 scopus 로고    scopus 로고
    • New Zealand Statistics , New Zealand. Available at, Verified 14 November
    • New Zealand Statistics (2005) Statistics New Zealand. Available at www.stats.govt.nz [Verified 14 November 2007].
    • (2005) Statistics
  • 24
    • 0001656490 scopus 로고
    • Isolation and characterization of Methanobacterium ruminantium n. sp
    • Smith PH, Hungate RE (1958) Isolation and characterization of Methanobacterium ruminantium n. sp. Journal of Bacteriology 75, 713-718.
    • (1958) Journal of Bacteriology , vol.75 , pp. 713-718
    • Smith, P.H.1    Hungate, R.E.2
  • 25
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: Functional analysis and comparative genomics
    • Smith DR, Doucette-Stam LA, Deloughry C, Lee H, Dubois J, et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics. Journal of Bacteriology 179, 7135-7155.
    • (1997) Journal of Bacteriology , vol.179 , pp. 7135-7155
    • Smith, D.R.1    Doucette-Stam, L.A.2    Deloughry, C.3    Lee, H.4    Dubois, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.