-
1
-
-
0038636966
-
GAMOLA: A new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes
-
doi: 10.1089/153623103322246557
-
Altermann E, Klaenhammer TR (2003) GAMOLA: a new local solution for sequence annotation and analyzing draft and finished prokaryotic genomes. OMICS 7, 161-169. doi: 10.1089/153623103322246557
-
(2003)
OMICS
, vol.7
, pp. 161-169
-
-
Altermann, E.1
Klaenhammer, T.R.2
-
2
-
-
25444482839
-
PathwayVoyager: Pathway mapping using theKyoto Encyclopedia of Genes and Genomes (KEGG) database
-
doi: 10.1186/1471-2164-6-60
-
Altermann E, Klaenhammer TR (2005) PathwayVoyager: pathway mapping using theKyoto Encyclopedia of Genes and Genomes (KEGG) database. BMC Genomics 6, 60-66. doi: 10.1186/1471-2164-6-60
-
(2005)
BMC Genomics
, vol.6
, pp. 60-66
-
-
Altermann, E.1
Klaenhammer, T.R.2
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
doi: 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25, 3389-3402. doi: 10.1093/nar/25.17.3389
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0018419825
-
Methanogens: Re-evaluation of a unique biological group
-
Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: re-evaluation of a unique biological group. Microbiological Reviews 43, 260-296.
-
(1979)
Microbiological Reviews
, vol.43
, pp. 260-296
-
-
Balch, W.E.1
Fox, G.E.2
Magrum, L.J.3
Woese, C.R.4
Wolfe, R.S.5
-
5
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon
-
doi: 10.1126/science.273.5278. 1058
-
Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, et al. (1996) Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273, 1058-1073. doi: 10.1126/science.273.5278. 1058
-
(1996)
Methanococcus jannaschii. Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.4
Fleischmann, R.D.5
-
6
-
-
0001973467
-
Carbohydrate-active enzymes: An integrated database approach
-
Eds HJ Gilbert, G Davies, B Henrissat, B Svensson) pp, The Royal Society of Chemistry, Cambridge Available at, Verified 12 November 2007
-
Coutinho PM, Henrissat B (1999) Carbohydrate-active enzymes: an integrated database approach. In 'Recent advances in carbohydrate bioengineering'. (Eds HJ Gilbert, G Davies, B Henrissat, B Svensson) pp. 3-12. (The Royal Society of Chemistry, Cambridge) Available at http://www.cazy.org/ [Verified 12 November 2007].
-
(1999)
Recent advances in carbohydrate bioengineering
, pp. 3-12
-
-
Coutinho, P.M.1
Henrissat, B.2
-
7
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
doi: 10.1093/nar/27.23.4636
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL (1999) Improved microbial gene identification with GLIMMER. Nucleic Acids Research 27, 4636-4641. doi: 10.1093/nar/27.23.4636
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
8
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
doi: 10.1126/science. 7542800
-
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512. doi: 10.1126/science. 7542800
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
-
9
-
-
30744456055
-
The genome sequence of Methanosphaera stadtmanae revealswhy this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis
-
doi: 10.1128/JB.188.2.642-658.2006
-
Fricke WF, Seedorf H, Henne A, Kruer M, Liesegang H, Hedderich R, Gottschalk G, Thauer RK (2006) The genome sequence of Methanosphaera stadtmanae revealswhy this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis. Journal of Bacteriology 188, 642-658. doi: 10.1128/JB.188.2.642-658.2006
-
(2006)
Journal of Bacteriology
, vol.188
, pp. 642-658
-
-
Fricke, W.F.1
Seedorf, H.2
Henne, A.3
Kruer, M.4
Liesegang, H.5
Hedderich, R.6
Gottschalk, G.7
Thauer, R.K.8
-
10
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
-
doi: 10.1007/s00239-005-0223-z
-
Godde JS, Bickerton A (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. Journal of Molecular Evolution 62, 718-729. doi: 10.1007/s00239-005-0223-z
-
(2006)
Journal of Molecular Evolution
, vol.62
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
11
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
doi: 10.1371/journal.pcbi.0010060
-
Haft DH, Selengut J, Mongodin EF, Nelson KE (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Computational Biology 1, e60. doi: 10.1371/journal.pcbi.0010060
-
(2005)
PLoS Computational Biology
, vol.1
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
12
-
-
0036408356
-
Identification of a novel family of sequence repeats among prokaryotes
-
doi: 10.1089/15362310252780816
-
Jansen R, van Embden JD, Gaastra W, Schouls LM (2002a) Identification of a novel family of sequence repeats among prokaryotes. OMICS 6, 23-33. doi: 10.1089/15362310252780816
-
(2002)
OMICS
, vol.6
, pp. 23-33
-
-
Jansen, R.1
van Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
13
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
doi: 10.1046/j.1365-2958. 2002.02839.x
-
Jansen R, van Embden JD, Gaastra W, Schouls LM (2002b) Identification of genes that are associated with DNA repeats in prokaryotes. Molecular Microbiology 43, 1565-1575. doi: 10.1046/j.1365-2958. 2002.02839.x
-
(2002)
Molecular Microbiology
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
van Embden, J.D.2
Gaastra, W.3
Schouls, L.M.4
-
14
-
-
0033393081
-
Three views of microbial genomes
-
doi: 10.1016/S0923-2508(99) 00116-3
-
Jensen LJ, Friis C, Ussery DW (1999) Three views of microbial genomes. Research in Microbiology 150, 773-777. doi: 10.1016/S0923-2508(99) 00116-3
-
(1999)
Research in Microbiology
, vol.150
, pp. 773-777
-
-
Jensen, L.J.1
Friis, C.2
Ussery, D.W.3
-
15
-
-
0025327665
-
Effect of Methanobrevibacter smithii on xylanolytic activity of anaerobic ruminal fungi
-
Joblin KN, Naylor GE, Williams AG (1990) Effect of Methanobrevibacter smithii on xylanolytic activity of anaerobic ruminal fungi. Applied and Environmental Microbiology 56, 2287-2295.
-
(1990)
Applied and Environmental Microbiology
, vol.56
, pp. 2287-2295
-
-
Joblin, K.N.1
Naylor, G.E.2
Williams, A.G.3
-
16
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
doi: 10.1093/nar/gkh063
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M (2004) The KEGG resource for deciphering the genome. Nucleic Acids Research 32, D277-D280. doi: 10.1093/nar/gkh063
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
17
-
-
0033066718
-
REPuter: Fast computation of maximal repeats in complete genomes
-
doi: 10.1093/bioinformatics/15.5.426
-
Kurtz S, Schleiermacher C (1999) REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics (Oxford, England) 15, 426-427. doi: 10.1093/bioinformatics/15.5.426
-
(1999)
Bioinformatics (Oxford, England)
, vol.15
, pp. 426-427
-
-
Kurtz, S.1
Schleiermacher, C.2
-
18
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
doi: 10.1093/nar/25.5.955
-
Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Research 25, 955-964. doi: 10.1093/nar/25.5.955
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
19
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryoticRNAi, and hypothetical mechanisms of action
-
doi: 10.1186/1745-6150-1-7
-
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryoticRNAi, and hypothetical mechanisms of action. Biology Direct 1, 7-32. doi: 10.1186/1745-6150-1-7
-
(2006)
Biology Direct
, vol.1
, pp. 7-32
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
20
-
-
37649002304
-
New Zealand's greenhouse gas inventory 1990-2004
-
Ministry for the Environment , Ministry for the Environment, New Zealand. Available at, Verified 12 November
-
Ministry for the Environment (2006) New Zealand's greenhouse gas inventory 1990-2004. The National Inventory Report and Common Reporting Format. Ministry for the Environment, New Zealand. Available at http://www.mfe.govt.nz/ publications/climate/nir-apr06/nirapr06.pdf [Verified 12 November 2007].
-
(2006)
The National Inventory Report and Common Reporting Format
-
-
-
21
-
-
34347244108
-
-
New Zealand Statistics , New Zealand. Available at, Verified 14 November
-
New Zealand Statistics (2005) Statistics New Zealand. Available at www.stats.govt.nz [Verified 14 November 2007].
-
(2005)
Statistics
-
-
-
22
-
-
1842329756
-
Methanogenesis: Genes, genomes and who's on first?
-
Reeve JN, Nolling J, Morgan RM, Smith DR (1997) Methanogenesis: genes, genomes and who's on first? Journal of Bacteriology 179, 5975-5986.
-
(1997)
Journal of Bacteriology
, vol.179
, pp. 5975-5986
-
-
Reeve, J.N.1
Nolling, J.2
Morgan, R.M.3
Smith, D.R.4
-
23
-
-
34447296622
-
Genomic adaptations of Methanobrevibacter smithii to the human gut
-
doi: 10.1073/pnas.0704189104
-
Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI (2007) Genomic adaptations of Methanobrevibacter smithii to the human gut. Proceedings of the National Academy of Sciences of the United States of America 104, 10643-10648. doi: 10.1073/pnas.0704189104
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 10643-10648
-
-
Samuel, B.S.1
Hansen, E.E.2
Manchester, J.K.3
Coutinho, P.M.4
Henrissat, B.5
Fulton, R.6
Latreille, P.7
Kim, K.8
Wilson, R.K.9
Gordon, J.I.10
-
24
-
-
0001656490
-
Isolation and characterization of Methanobacterium ruminantium n. sp
-
Smith PH, Hungate RE (1958) Isolation and characterization of Methanobacterium ruminantium n. sp. Journal of Bacteriology 75, 713-718.
-
(1958)
Journal of Bacteriology
, vol.75
, pp. 713-718
-
-
Smith, P.H.1
Hungate, R.E.2
-
25
-
-
15644383855
-
Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: Functional analysis and comparative genomics
-
Smith DR, Doucette-Stam LA, Deloughry C, Lee H, Dubois J, et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics. Journal of Bacteriology 179, 7135-7155.
-
(1997)
Journal of Bacteriology
, vol.179
, pp. 7135-7155
-
-
Smith, D.R.1
Doucette-Stam, L.A.2
Deloughry, C.3
Lee, H.4
Dubois, J.5
-
27
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
doi: 10.1093/nar/29.1.22
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Research 29, 22-28. doi: 10.1093/nar/29.1.22
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
|