Analysis of the open region and of DNA-protein contacts of archaeal RNA polymerase transcription complexes during transition from initiation to elongation

Journal of Biological Chemistry

Volumn 278, Issue 33, 2003, Pages 30497-30505

  Spitalny, Patrizia ^a   Thomm, Michael ^a  

^a UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; DNA; GENETIC ENGINEERING; PROTEINS; RNA;

PROTEIN BINDING;

BIOCHEMISTRY;

ADENOSINE TRIPHOSPHATE; DNA; PHOSPHORUS 32; RNA POLYMERASE; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR;

ARCHAEBACTERIUM; ARTICLE; BINDING SITE; COMPLEX FORMATION; DNA FOOTPRINTING; DNA PROTEIN COMPLEX; GENE EXPRESSION; GENETIC TRANSCRIPTION; ISOTOPE LABELING; NONHUMAN; PRIORITY JOURNAL; PYROCOCCUS; TATA BOX; TRANSCRIPTION INITIATION;

ARCHAEAL PROTEINS; BASE SEQUENCE; DNA FOOTPRINTING; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; EXODEOXYRIBONUCLEASES; MOLECULAR SEQUENCE DATA; PEPTIDE CHAIN ELONGATION, TRANSLATIONAL; POTASSIUM PERMANGANATE; PYROCOCCUS; RNA, ARCHAEAL; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC;

ARCHAEA; PROKARYOTA; PYROCOCCUS;

EID: 0042232576     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M303633200     Document Type: Article

References (36)

1. Heumann, H., Zaychikov, E., Denissova, L., and Hermann, T. (1997) Nucleic Acids Mol. Biol. 11, 151-177
2. Fiedler, U., and Timmers, H. Th. M. (2000) BioEssays 22, 316-326
3. Kassavetis, G. A., Blanco, J. A., Johnsen, T. E., and Geiduschek, E. P. (1992) J. Mol. Biol. 226, 47-58
4. Kassavetis, G. A., Letts, G. A., and Geiduschek, E. P. (1999) EMBO J. 18, 5042-5051
5. Kahl, B. F., Li, H., and Paule, M. R. (2000) J. Mol. Biol. 299, 75-89
6. Hausner, W., and Thomm, M. (2001) J. Bacteriol. 183, 3025-3031
7. Bell, S. D., Jaxel, C., Nadal, M., Kosa, P. F., and Jackson, S. P. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 15218-15222
8. deHaseth, P. L., and Helmann, J. D. (1995) Mol. Microbiol. 16, 817-824
9. van Hippel, P. H., Yager, T. D., and Gill, S. C. (1992) in Transcription Regulation (McKnight, S., and Yamamoto, K., eds) pp. 179-201, Cold Spring Harbor Laboratory, NY
10. Jiang, Y., Smale, S. T., and Gralla, J. D. (1993) J. Biol. Chem. 268, 6535-6540
11. Kustu, S., Santero, E., Keener, J., Popham, D., and Weiss, D. (1989) J. Microbiol. 53, 367-376
12. Timmers, H. Th. M. (1994) EMBO J. 13, 391-399
13. Samkurashivili, I., and Luse, D. S. (1998) Mol. Cell. Biol. 18, 5343-5354
14. Cai, H., and Luse, D. S. (1987) J. Biol. Chem. 262, 298-304
15. Holstege, F. C. P., Fiedler, U., and Timmers, H. Th. M. (1997) EMBO J. 16, 7468-7480
16. Yan, M., and Gralla, J. D. (1997) EMBO J. 16, 7457-7467
17. Krummel, B., and Chamberlin, M. J. (1992) J. Mol. Biol. 225, 239-250
18. Zaychikov, E., Denissova, L., and Heumann, H. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 1739-1743
19. Komissarova, N., and Kashlev, M. (1997) J. Biol. Chem. 272, 15329-15338
20. Nudler, E., Mustaev, A., Lukhtanov, E., Goldfarb, A. (1997) Cell 89, 33-41
21. Thomm, M. (1996) FEMS Microbiol. Rev. 18, 159-171
22. Bell, S. D., and Jackson, S. P. (2001) Curr. Opin. Microbiol. 4, 208-213
23. Bell, S. D., Brinkman, A. B., van der Oost, J., Jackson, S. P. (2001) EMBO Rep. 21, 133-138
24. Hanzelka, B. L., Darcy, T., and Reeve, J. N. (2001) J. Bacteriol. 183, 1813-1818
25. Nudler, E., Goldfarb, A., and Kashlev, M. (1994) Science 265, 793-796
26. Hethke, C., Geerling, A. C., Hausner, w., de Vos, W. M., and Thomm, M. (1996) Nucleic Acids Res. 24, 2369-2376
27. Hausner, W., Wettach, J., Hethke, C., and Thomm, M. (1996) J. Biol. Chem. 271, 30144-30148
28. Bartlett, M. S., Thomm, M., and Geiduschek, E. P. (2000) Nat. Struct. Biol. 7, 703-705
29. Dahlke, I., and Thomm, M. (2002) Nucleic Acids Res. 30, 701-710
30. Vierke, G., Engelmann, A., Hebbeln, C., and Thomm, M. (2003) J. Biol. Chem. 278, 18-26
31. Carpousis, A. J., and Gralla, J. D. (1980) Biochemistry 19, 3245-3253
32. Fiedler, U., and Timmers, H. Th. M. (2001) Nucleic Acids Res. 29, 2706-2714
33. Bell, S. D., and Jackson, S. P. (2000) J. Biol. Chem. 275, 12934-12940
34. Metzger, W., Schickor, P., and Heumann, H. (1989) EMBO J. 8, 2745-2754
35. Samkurashvili, I., and Luse, D. S. (1996) J. Biol. Chem. 271, 23495-23505
36. Sidorenkov, J., Komissarova, N., and Kashlev, M. (1998) Mol. Cell 2, 55-64