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Volumn 408, Issue 1-2, 2008, Pages 104-111

A systematic method for mapping multiple loci: An application to construct a genetic network for rheumatoid arthritis

Author keywords

Complex disease; Ensemble decision; Genome wide association; Integrative strategy; Interaction

Indexed keywords

ARTICLE; EVALUATION; GENE LOCUS; GENE MAPPING; GENOME; GENOTYPE; HUMAN; KNOWLEDGE BASE; MAJOR CLINICAL STUDY; PRIORITY JOURNAL; RHEUMATOID ARTHRITIS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 37549054343     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.10.028     Document Type: Article
Times cited : (13)

References (34)
  • 1
    • 33745051114 scopus 로고    scopus 로고
    • High-density SNP analysis of 642 Caucasian families with rheumatoid arthritis identifies two new linkage regions on 11p12 and 2q33
    • Amos C.I., et al. High-density SNP analysis of 642 Caucasian families with rheumatoid arthritis identifies two new linkage regions on 11p12 and 2q33. Genes. Immun. 7 (2006) 277-286
    • (2006) Genes. Immun. , vol.7 , pp. 277-286
    • Amos, C.I.1
  • 2
    • 1842535886 scopus 로고    scopus 로고
    • Phenotype matters
    • Biesecker L.G. Phenotype matters. Nat. Genet. 36 (2004) 323-324
    • (2004) Nat. Genet. , vol.36 , pp. 323-324
    • Biesecker, L.G.1
  • 3
    • 0141865517 scopus 로고    scopus 로고
    • Approaches to identify genes for complex human diseases: lessons from Mendelian disorders
    • Dean M. Approaches to identify genes for complex human diseases: lessons from Mendelian disorders. Hum. Mutat. 22 (2003) 261-274
    • (2003) Hum. Mutat. , vol.22 , pp. 261-274
    • Dean, M.1
  • 5
    • 34250006413 scopus 로고    scopus 로고
    • Genome-wide association study identifies novel breast cancer susceptibility loci
    • Easton D.F., et al. Genome-wide association study identifies novel breast cancer susceptibility loci. Nature 447 (2007) 1087-1093
    • (2007) Nature , vol.447 , pp. 1087-1093
    • Easton, D.F.1
  • 6
    • 0038328965 scopus 로고    scopus 로고
    • Meta-analysis of four rheumatoid arthritis genome-wide linkage studies: confirmation of a susceptibility locus on chromosome 16
    • Fisher S.A., Lanchbury J.S., and Lewis C.M. Meta-analysis of four rheumatoid arthritis genome-wide linkage studies: confirmation of a susceptibility locus on chromosome 16. Arthritis Rheum. 48 (2003) 1200-1206
    • (2003) Arthritis Rheum. , vol.48 , pp. 1200-1206
    • Fisher, S.A.1    Lanchbury, J.S.2    Lewis, C.M.3
  • 7
    • 33745079199 scopus 로고    scopus 로고
    • The challenge for genetic epidemiologists: how to analyze large numbers of SNPs in relation to complex diseases
    • Heidema A.G., Boer J.M., Nagelkerke N., Mariman E.C., van der A.D., and Feskens E.J. The challenge for genetic epidemiologists: how to analyze large numbers of SNPs in relation to complex diseases. BMC Genet. 7 (2006) 23
    • (2006) BMC Genet. , vol.7 , pp. 23
    • Heidema, A.G.1    Boer, J.M.2    Nagelkerke, N.3    Mariman, E.C.4    van der, A.D.5    Feskens, E.J.6
  • 8
    • 34250010480 scopus 로고    scopus 로고
    • A common variant on chromosome 9p21 affects the risk of myocardial infarction
    • Helgadottir A., et al. A common variant on chromosome 9p21 affects the risk of myocardial infarction. Science 316 (2007) 1491-1493
    • (2007) Science , vol.316 , pp. 1491-1493
    • Helgadottir, A.1
  • 9
    • 33645825830 scopus 로고    scopus 로고
    • A common genetic variant is associated with adult and childhood obesity
    • Herbert A., et al. A common genetic variant is associated with adult and childhood obesity. Science 312 (2006) 279-283
    • (2006) Science , vol.312 , pp. 279-283
    • Herbert, A.1
  • 10
    • 1842554973 scopus 로고    scopus 로고
    • Association between urokinase gene 3′-UTR T/C polymorphism and Chinese patients with rheumatoid arthritis in Taiwan
    • Huang C.M., Chen C.L., Tsai J.J., Tsai C.H., and Tsai F.J. Association between urokinase gene 3′-UTR T/C polymorphism and Chinese patients with rheumatoid arthritis in Taiwan. Clin Exp. Rheumatol. 22 (2004) 219-222
    • (2004) Clin Exp. Rheumatol. , vol.22 , pp. 219-222
    • Huang, C.M.1    Chen, C.L.2    Tsai, J.J.3    Tsai, C.H.4    Tsai, F.J.5
  • 12
    • 33847008736 scopus 로고    scopus 로고
    • Optimal two-stage strategy for detecting interacting genes in complex diseases
    • Ionita I., and Man M. Optimal two-stage strategy for detecting interacting genes in complex diseases. BMC Genet. 7 (2006) 39
    • (2006) BMC Genet. , vol.7 , pp. 39
    • Ionita, I.1    Man, M.2
  • 13
    • 26944494140 scopus 로고    scopus 로고
    • Analysis of sib-pair IBD profiles and genomic context for identification of the relevant molecular signatures for alcoholism
    • Fuzzy Systems and Knowledge Discovery
    • Li C.X., Du L., Li X., Gong B.S., Zhang J., and Rao S.Q. Analysis of sib-pair IBD profiles and genomic context for identification of the relevant molecular signatures for alcoholism. Fuzzy Systems and Knowledge Discovery. Proceedings Pt 2 (2005) 845-851
    • (2005) Proceedings , vol.PART 2 , pp. 845-851
    • Li, C.X.1    Du, L.2    Li, X.3    Gong, B.S.4    Zhang, J.5    Rao, S.Q.6
  • 14
    • 2542596956 scopus 로고    scopus 로고
    • Gene mining: a novel and powerful ensemble decision approach to hunting for disease genes using microarray expression profiling
    • Li X., Rao S., Wang Y., and Gong B. Gene mining: a novel and powerful ensemble decision approach to hunting for disease genes using microarray expression profiling. Nucleic Acids Res 32 (2004) 2685-2694
    • (2004) Nucleic Acids Res , vol.32 , pp. 2685-2694
    • Li, X.1    Rao, S.2    Wang, Y.3    Gong, B.4
  • 15
    • 37549010682 scopus 로고    scopus 로고
    • Decision forest analysis of large-scale sib-pair identical-by-decent profiles for locating the underlying disease genes for alcoholism in human
    • Li X., Rao S.Q., Zhang W., Guo Z., Jiang W., and Du L. Decision forest analysis of large-scale sib-pair identical-by-decent profiles for locating the underlying disease genes for alcoholism in human. Beijing Da Xue Xue Bao 38 (2006) 71-73
    • (2006) Beijing Da Xue Xue Bao , vol.38 , pp. 71-73
    • Li, X.1    Rao, S.Q.2    Zhang, W.3    Guo, Z.4    Jiang, W.5    Du, L.6
  • 16
    • 0035004195 scopus 로고    scopus 로고
    • Complexity and power in case-control association studies
    • Longmate J.A. Complexity and power in case-control association studies. Am. J. Hum. Genet. 68 (2001) 1229-1237
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 1229-1237
    • Longmate, J.A.1
  • 17
    • 34249996115 scopus 로고    scopus 로고
    • A common allele on chromosome 9 associated with coronary heart disease
    • McPherson R., et al. A common allele on chromosome 9 associated with coronary heart disease. Science 316 (2007) 1488-1491
    • (2007) Science , vol.316 , pp. 1488-1491
    • McPherson, R.1
  • 18
    • 33644774556 scopus 로고    scopus 로고
    • Asthma genetics 2006: the long and winding road to gene discovery
    • Ober C., and Hoffjan S. Asthma genetics 2006: the long and winding road to gene discovery. Genes Immun. 7 (2006) 95-100
    • (2006) Genes Immun. , vol.7 , pp. 95-100
    • Ober, C.1    Hoffjan, S.2
  • 19
    • 4444370736 scopus 로고    scopus 로고
    • Dense genome-wide linkage analysis of rheumatoid arthritis, including covariates
    • Osorio Y.F.J., et al. Dense genome-wide linkage analysis of rheumatoid arthritis, including covariates. Arthritis Rheum. 50 (2004) 2757-2765
    • (2004) Arthritis Rheum. , vol.50 , pp. 2757-2765
    • Osorio, Y.F.J.1
  • 20
    • 0041308082 scopus 로고    scopus 로고
    • ALS2, a novel guanine nucleotide exchange factor for the small GTPase Rab5, is implicated in endosomal dynamics
    • Otomo A., et al. ALS2, a novel guanine nucleotide exchange factor for the small GTPase Rab5, is implicated in endosomal dynamics. Hum. Mol. Genet. 12 (2003) 1671-1687
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 1671-1687
    • Otomo, A.1
  • 21
    • 28144441356 scopus 로고    scopus 로고
    • Replication of putative candidate-gene associations with rheumatoid arthritis in > 4000 samples from North America and Sweden: association of susceptibility with PTPN22, CTLA4, and PADI4
    • Plenge R.M., et al. Replication of putative candidate-gene associations with rheumatoid arthritis in > 4000 samples from North America and Sweden: association of susceptibility with PTPN22, CTLA4, and PADI4. Am. J. Hum. Genet. 77 (2005) 1044-1060
    • (2005) Am. J. Hum. Genet. , vol.77 , pp. 1044-1060
    • Plenge, R.M.1
  • 22
    • 0032112406 scopus 로고    scopus 로고
    • MINDscape and PubMed: web sites that can change the way we work
    • Richardson M.L. MINDscape and PubMed: web sites that can change the way we work. Acad. Radiol. 5 (1998) 519-520
    • (1998) Acad. Radiol. , vol.5 , pp. 519-520
    • Richardson, M.L.1
  • 23
    • 37549062966 scopus 로고    scopus 로고
    • S.A.G.E., 2005. Statistical Analysis for Genetic Epidemiology (S.A.G.E.) version 5.1 User Reference Manual. Case Western Reserve University.
  • 24
    • 0025882138 scopus 로고
    • Using OMIM (On-line Mendelian Inheritance in Man) as an expert system in medical genetics
    • Schorderet D.F. Using OMIM (On-line Mendelian Inheritance in Man) as an expert system in medical genetics. Am. J. Med. Genet. 39 (1991) 278-284
    • (1991) Am. J. Med. Genet. , vol.39 , pp. 278-284
    • Schorderet, D.F.1
  • 25
    • 0032876978 scopus 로고    scopus 로고
    • dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation
    • Sherry S.T., Ward M., and Sirotkin K. dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation. Genome Res. 9 (1999) 677-679
    • (1999) Genome Res. , vol.9 , pp. 677-679
    • Sherry, S.T.1    Ward, M.2    Sirotkin, K.3
  • 26
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • A haplotype map of the human genome. Nature 437 (2005) 1299-1320
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 28
    • 18644370730 scopus 로고    scopus 로고
    • Elevated CXCL16 expression by synovial macrophages recruits memory T cells into rheumatoid joints
    • van der Voort R., et al. Elevated CXCL16 expression by synovial macrophages recruits memory T cells into rheumatoid joints. Arthritis Rheum. 52 (2005) 1381-1391
    • (2005) Arthritis Rheum. , vol.52 , pp. 1381-1391
    • van der Voort, R.1
  • 29
    • 0034816052 scopus 로고    scopus 로고
    • Activation of NF-kappaB in airway epithelial cells is dependent on CFTR trafficking and Cl-channel function
    • Weber A.J., Soong G., Bryan R., Saba S., and Prince A. Activation of NF-kappaB in airway epithelial cells is dependent on CFTR trafficking and Cl-channel function. Am. J. Physiol., Lung Cell. Mol. Physiol. 281 (2001) L71-L78
    • (2001) Am. J. Physiol., Lung Cell. Mol. Physiol. , vol.281
    • Weber, A.J.1    Soong, G.2    Bryan, R.3    Saba, S.4    Prince, A.5
  • 30
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3000 shared controls
    • Genome-wide association study of 14,000 cases of seven common diseases and 3000 shared controls. Nature 447 (2007) 661-678
    • (2007) Nature , vol.447 , pp. 661-678
  • 31
    • 0028907841 scopus 로고
    • Correlation between disease phenotype and genetic-heterogeneity in rheumatoid-arthritis
    • Weyand C.M., McCarthy T.G., and Goronzy J.J. Correlation between disease phenotype and genetic-heterogeneity in rheumatoid-arthritis. J. Clin. Invest. 95 (1995) 2120-2126
    • (1995) J. Clin. Invest. , vol.95 , pp. 2120-2126
    • Weyand, C.M.1    McCarthy, T.G.2    Goronzy, J.J.3
  • 32
    • 0027220695 scopus 로고
    • Nerve growth factor-gamma activates soluble and receptor-bound single chain urokinase-type plasminogen activator
    • Wolf B.B., Vasudevan J., Henkin J., and Gonias S.L. Nerve growth factor-gamma activates soluble and receptor-bound single chain urokinase-type plasminogen activator. J. Biol. Chem. 268 (1993) 16327-16331
    • (1993) J. Biol. Chem. , vol.268 , pp. 16327-16331
    • Wolf, B.B.1    Vasudevan, J.2    Henkin, J.3    Gonias, S.L.4
  • 33
    • 27644519784 scopus 로고    scopus 로고
    • Decision forest analysis of 61 single nucleotide polymorphisms in a case-control study of esophageal cancer; a novel method
    • Xie Q., et al. Decision forest analysis of 61 single nucleotide polymorphisms in a case-control study of esophageal cancer; a novel method. BMC Bioinformatics 6 Suppl 2 (2005) S4
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 2
    • Xie, Q.1
  • 34
    • 20544440135 scopus 로고    scopus 로고
    • An entropy-based statistic for genomewide association studies
    • Zhao J., Boerwinkle E., and Xiong M. An entropy-based statistic for genomewide association studies. Am. J. Hum. Genet. 77 (2005) 27-40
    • (2005) Am. J. Hum. Genet. , vol.77 , pp. 27-40
    • Zhao, J.1    Boerwinkle, E.2    Xiong, M.3


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