-
1
-
-
0033119487
-
Structure of the oligonucleotide d(CGTATATACG) as a site-specific complex with nickel ions
-
Abrescia N.G.A., Malinina L., Fernandez L.G., Huynh-Dinh T., Neidle S., and Subirana J.A. Structure of the oligonucleotide d(CGTATATACG) as a site-specific complex with nickel ions. Nucleic Acids Res. 27 (1999) 1593-1599
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1593-1599
-
-
Abrescia, N.G.A.1
Malinina, L.2
Fernandez, L.G.3
Huynh-Dinh, T.4
Neidle, S.5
Subirana, J.A.6
-
4
-
-
1842717952
-
Comparative analysis of amino acid repeats in rodents and humans
-
Albà M.M., and Guigó R. Comparative analysis of amino acid repeats in rodents and humans. Genome Res. 14 (2004) 549-554
-
(2004)
Genome Res.
, vol.14
, pp. 549-554
-
-
Albà, M.M.1
Guigó, R.2
-
5
-
-
0035020731
-
The comparative genomics of polyglutamine repeats: extreme difference in the codon organization of repeat-encoding regions between mammals and Drosophila
-
Albà M.M., Santibáñez-Koref M.F., and Hancock J.M. The comparative genomics of polyglutamine repeats: extreme difference in the codon organization of repeat-encoding regions between mammals and Drosophila. J. Mol. Evol. 52 (2001) 249-259
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 249-259
-
-
Albà, M.M.1
Santibáñez-Koref, M.F.2
Hancock, J.M.3
-
6
-
-
8444231721
-
Non-B DNA conformations, genomic rearrangements, and human disease
-
Bacolla A., and Wells R.D. Non-B DNA conformations, genomic rearrangements, and human disease. J. Biol. Chem. 279 (2004) 47411-47414
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 47411-47414
-
-
Bacolla, A.1
Wells, R.D.2
-
7
-
-
33746793264
-
Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure
-
Bao Y., White C.L., and Luger K. Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure. J. Mol. Biol. 361 (2006) 617-624
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 617-624
-
-
Bao, Y.1
White, C.L.2
Luger, K.3
-
10
-
-
0031009089
-
Mapping of repetitive and non-repetitive DNA probes to chromosomes of the microsporidian Encephalitozoon cuniculi
-
Biderre C., et al. Mapping of repetitive and non-repetitive DNA probes to chromosomes of the microsporidian Encephalitozoon cuniculi. Gene 191 (1997) 39-45
-
(1997)
Gene
, vol.191
, pp. 39-45
-
-
Biderre, C.1
-
11
-
-
33749991391
-
The rise, fall and renaissance of microsatellites in eukaryotic genomes
-
Burschiazzo E., and Gemmell N.J. The rise, fall and renaissance of microsatellites in eukaryotic genomes. BioEssays 28 (2006) 1040-1050
-
(2006)
BioEssays
, vol.28
, pp. 1040-1050
-
-
Burschiazzo, E.1
Gemmell, N.J.2
-
12
-
-
14844348834
-
DNA coiled coils
-
Campos J.L., Urpí L., Sanmartín T., Gouyette C., and Subirana J.A. DNA coiled coils. Proc. Natl. Acad. Sci. 102 (2005) 3663-3666
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 3663-3666
-
-
Campos, J.L.1
Urpí, L.2
Sanmartín, T.3
Gouyette, C.4
Subirana, J.A.5
-
13
-
-
33746677518
-
Overview of the structure of all-AT oligonucleotides: organization in helices and packing interactions
-
Campos L., et al. Overview of the structure of all-AT oligonucleotides: organization in helices and packing interactions. Biophys. J. 91 (2006) 892-903
-
(2006)
Biophys. J.
, vol.91
, pp. 892-903
-
-
Campos, L.1
-
14
-
-
0028348630
-
Sequence-dependent conformational variations in the B-DNA double-helix of poly d(AATT)·poly d(AATT)
-
Chandrasekaran R., Radha A., and Ratliff R.L. Sequence-dependent conformational variations in the B-DNA double-helix of poly d(AATT)·poly d(AATT). J. Biomol. Struct. Dyn. 11 (1994) 741-766
-
(1994)
J. Biomol. Struct. Dyn.
, vol.11
, pp. 741-766
-
-
Chandrasekaran, R.1
Radha, A.2
Ratliff, R.L.3
-
17
-
-
33645520163
-
Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex
-
Gilfillan G.D., et al. Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. Genes Dev. 20 (2006) 858-870
-
(2006)
Genes Dev.
, vol.20
, pp. 858-870
-
-
Gilfillan, G.D.1
-
19
-
-
19344366459
-
Genome-wide mapping of the cohesion complex in the yeast Saccharomyces cerevisiae
-
Glynn E.F., et al. Genome-wide mapping of the cohesion complex in the yeast Saccharomyces cerevisiae. PLoS Biol. 2 (2004) 1325-1339
-
(2004)
PLoS Biol.
, vol.2
, pp. 1325-1339
-
-
Glynn, E.F.1
-
21
-
-
33846699083
-
A hexanucleotide element directs microRNA nuclear import
-
Hwang H., Wentzel E.A., and Mendell J.T. A hexanucleotide element directs microRNA nuclear import. Science 315 (2007) 97-100
-
(2007)
Science
, vol.315
, pp. 97-100
-
-
Hwang, H.1
Wentzel, E.A.2
Mendell, J.T.3
-
22
-
-
0002488711
-
Functional roles of microsatellites and minisatellites
-
Goldstein D.B., and Schlötterer C. (Eds), Oxford University Press, Oxford
-
Kashi Y., and Soller M. Functional roles of microsatellites and minisatellites. In: Goldstein D.B., and Schlötterer C. (Eds). Microsatellites. Evolution and Applications (1999), Oxford University Press, Oxford 10-23
-
(1999)
Microsatellites. Evolution and Applications
, pp. 10-23
-
-
Kashi, Y.1
Soller, M.2
-
23
-
-
33847672264
-
Sequence-dependent nucleosome structure and stability variations detected by Förster resonance energy transfer
-
Kelbauskas L., Chan N., Bash R., Yodh J., Woodbury N., and Lohr D. Sequence-dependent nucleosome structure and stability variations detected by Förster resonance energy transfer. Biochemistry 46 (2007) 2239-2248
-
(2007)
Biochemistry
, vol.46
, pp. 2239-2248
-
-
Kelbauskas, L.1
Chan, N.2
Bash, R.3
Yodh, J.4
Woodbury, N.5
Lohr, D.6
-
24
-
-
2042437650
-
-
Lander, E.S., et al., 2001. The International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409, 860-921.
-
-
-
-
25
-
-
0036682334
-
Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs)
-
Liebich I., Bode J., Reuter I., and Wingender E. Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs). Nucleic Acids Res. 30 (2002) 3433-3442
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3433-3442
-
-
Liebich, I.1
Bode, J.2
Reuter, I.3
Wingender, E.4
-
26
-
-
0029826454
-
DNA supercoiling and transcription: topological coupling of promoters
-
Lilley D.M.J., Chen D., and Bowater R.P. DNA supercoiling and transcription: topological coupling of promoters. Q. Rev. Biophys. 29 (1996) 203-225
-
(1996)
Q. Rev. Biophys.
, vol.29
, pp. 203-225
-
-
Lilley, D.M.J.1
Chen, D.2
Bowater, R.P.3
-
27
-
-
0027261149
-
Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster
-
Lohe A.R., Hilliker A.J., and Roberts P.A. Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster. Genetics 134 (1993) 1149-1174
-
(1993)
Genetics
, vol.134
, pp. 1149-1174
-
-
Lohe, A.R.1
Hilliker, A.J.2
Roberts, P.A.3
-
28
-
-
22344439942
-
Dynamic molecular linkers of the genome: the first decade of SMC proteins
-
Losada A., and Hirano T. Dynamic molecular linkers of the genome: the first decade of SMC proteins. Genes Dev. 19 (2005) 1269-1287
-
(2005)
Genes Dev.
, vol.19
, pp. 1269-1287
-
-
Losada, A.1
Hirano, T.2
-
29
-
-
33845244857
-
Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex
-
McDonel P., Jans J., Peterson B.K., and Meyer B.J. Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex. Nature 444 (2006) 614-618
-
(2006)
Nature
, vol.444
, pp. 614-618
-
-
McDonel, P.1
Jans, J.2
Peterson, B.K.3
Meyer, B.J.4
-
30
-
-
0032168436
-
Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena
-
Munteanu M.G., Vlahoviček K., Parthasarathy S., Simon I., and Pongor S. Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena. Trends Biochem. Sci. 23 (1998) 341-347
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 341-347
-
-
Munteanu, M.G.1
Vlahoviček, K.2
Parthasarathy, S.3
Simon, I.4
Pongor, S.5
-
32
-
-
0018129763
-
Higher order structure in metaphase chromosomes. I. The 250 Å fiber
-
Rattner J.B., and Hamkalo B.A. Higher order structure in metaphase chromosomes. I. The 250 Å fiber. Chromosoma 69 (1978) 363-372
-
(1978)
Chromosoma
, vol.69
, pp. 363-372
-
-
Rattner, J.B.1
Hamkalo, B.A.2
-
33
-
-
0346882668
-
MREPATT: detection and analysis of exact consecutive repeats in genomic sequences
-
Roset R., Subirana J.A., and Messeguer X. MREPATT: detection and analysis of exact consecutive repeats in genomic sequences. Bioinformatics 19 (2003) 2475-2476
-
(2003)
Bioinformatics
, vol.19
, pp. 2475-2476
-
-
Roset, R.1
Subirana, J.A.2
Messeguer, X.3
-
34
-
-
33745762610
-
Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA
-
Salceda J., Fernández X., and Roca J. Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA. EMBO J. 25 (2006) 2575-2583
-
(2006)
EMBO J.
, vol.25
, pp. 2575-2583
-
-
Salceda, J.1
Fernández, X.2
Roca, J.3
-
36
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal E., et al. A genomic code for nucleosome positioning. Nature 442 (2006) 772-778
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
-
37
-
-
34147107913
-
Update of the Anopheles gambiae PEST genome assembly
-
Sharakhova M.V., et al. Update of the Anopheles gambiae PEST genome assembly. Genome Biol. 8 (2007) R5
-
(2007)
Genome Biol.
, vol.8
-
-
Sharakhova, M.V.1
-
38
-
-
0030728216
-
A crystallographic approach to DNA bending: prediction of nucleosome formation by DNA triple repeats and other repetitive sequences
-
Subirana J.A. A crystallographic approach to DNA bending: prediction of nucleosome formation by DNA triple repeats and other repetitive sequences. FEBS Lett. 417 (1997) 352-354
-
(1997)
FEBS Lett.
, vol.417
, pp. 352-354
-
-
Subirana, J.A.1
-
39
-
-
0032990195
-
Structural features of single amino acid repeats in proteins
-
Subirana J.A., and Palau J. Structural features of single amino acid repeats in proteins. FEBS Lett. 448 (1999) 1-3
-
(1999)
FEBS Lett.
, vol.448
, pp. 1-3
-
-
Subirana, J.A.1
Palau, J.2
-
40
-
-
0037268258
-
Genome-wide analysis of micosatellite repeats in humans: their abundance and density in specific genomic regions
-
Subramanian S., Mishra R.K., and Singh L. Genome-wide analysis of micosatellite repeats in humans: their abundance and density in specific genomic regions. Genome Biol. 4 (2003) R13
-
(2003)
Genome Biol.
, vol.4
-
-
Subramanian, S.1
Mishra, R.K.2
Singh, L.3
-
41
-
-
0042594452
-
Triplet repeats in human genome: distribution and their association with genes and other genomic regions
-
Subramanian S., et al. Triplet repeats in human genome: distribution and their association with genes and other genomic regions. Bioinformatics 19 (2003) 549-552
-
(2003)
Bioinformatics
, vol.19
, pp. 549-552
-
-
Subramanian, S.1
-
42
-
-
0037433699
-
Genome-wide analysis of Bkm sequences (GATA repeats): predominant association with sex chromosomes and potential role in higher order chromatin organization and function
-
Subramanian S., Mishra R.K., and Singh L. Genome-wide analysis of Bkm sequences (GATA repeats): predominant association with sex chromosomes and potential role in higher order chromatin organization and function. Bioinformatics 19 (2003) 681-685
-
(2003)
Bioinformatics
, vol.19
, pp. 681-685
-
-
Subramanian, S.1
Mishra, R.K.2
Singh, L.3
-
43
-
-
0034310723
-
Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo
-
Suter B., Schnappauf G., and Thoma F. Poly(dA.dT) sequences exist as rigid DNA structures in nucleosome-free yeast promoters in vivo. Nucleic Acids Res. 28 (2000) 4083-4089
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4083-4089
-
-
Suter, B.1
Schnappauf, G.2
Thoma, F.3
-
44
-
-
33644845023
-
Structure of a DNA duplex with all-AT base pairs
-
Valls N., Richter M., and Subirana J.A. Structure of a DNA duplex with all-AT base pairs. Acta Crystallogr. D61 (2005) 1587-1593
-
(2005)
Acta Crystallogr.
, vol.D61
, pp. 1587-1593
-
-
Valls, N.1
Richter, M.2
Subirana, J.A.3
-
46
-
-
22244446185
-
Advances in mechanisms of genetic instability related to hereditary neurological diseases
-
Wells R.D., Dere R., Hebert M.L., Napierala M., and Son L.S. Advances in mechanisms of genetic instability related to hereditary neurological diseases. Nucleic Acids Res. 33 (2005) 3785-3798
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 3785-3798
-
-
Wells, R.D.1
Dere, R.2
Hebert, M.L.3
Napierala, M.4
Son, L.S.5
-
47
-
-
33847787053
-
Characterization of Z-DNA as a nucleosome boundary element in yeast
-
Wong B., Chen S., Kwon J., and Rich A. Characterization of Z-DNA as a nucleosome boundary element in yeast. Proc. Natl. Acad. Sci. 104 (2007) 2229-2234
-
(2007)
Proc. Natl. Acad. Sci.
, vol.104
, pp. 2229-2234
-
-
Wong, B.1
Chen, S.2
Kwon, J.3
Rich, A.4
-
48
-
-
34247371896
-
On switches and knobs, microsatellites and monogamy
-
Young L.J., and Hammock A.D. On switches and knobs, microsatellites and monogamy. Trends Genet. 23 (2007) 209-212
-
(2007)
Trends Genet.
, vol.23
, pp. 209-212
-
-
Young, L.J.1
Hammock, A.D.2
-
49
-
-
33646184682
-
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage
-
Zody M.C., et al. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. Nature 440 (2006) 1045-1049
-
(2006)
Nature
, vol.440
, pp. 1045-1049
-
-
Zody, M.C.1
-
50
-
-
33846897622
-
Combinatorial epigenetics, "junk DNA", and the evolution of complex organisms
-
Zuckerkandl E., and Cavalli G. Combinatorial epigenetics, "junk DNA", and the evolution of complex organisms. Gene 390 (2007) 232-242
-
(2007)
Gene
, vol.390
, pp. 232-242
-
-
Zuckerkandl, E.1
Cavalli, G.2
|