메뉴 건너뛰기




Volumn 59, Issue 1, 2008, Pages 36-44

Essential elements in the coding region of mRNA for translation of ColE2 Rep protein

Author keywords

Coding region; ColE2 Rep mRNA; Mutagenesis; SD sequence; Translation enhancer; Translation initiation

Indexed keywords

BACTERIAL PROTEIN; BACTERIAL RNA; HELICASE; MESSENGER RNA; PLASMID DNA;

EID: 37549020292     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2007.07.003     Document Type: Article
Times cited : (2)

References (41)
  • 1
    • 0029682322 scopus 로고    scopus 로고
    • Site-directed mutagenesis in vitro by mega primer PCR
    • Barik S. Site-directed mutagenesis in vitro by mega primer PCR. Methods Mol. Biol. 57 (1996) 203-215
    • (1996) Methods Mol. Biol. , vol.57 , pp. 203-215
    • Barik, S.1
  • 2
    • 33846235054 scopus 로고    scopus 로고
    • Naturally occurring adenines within mRNA coding sequences affect ribosome binding and expression in Escherichia coli
    • Brock J.E., Paz R.L., Cottle P., and Janssen G.R. Naturally occurring adenines within mRNA coding sequences affect ribosome binding and expression in Escherichia coli. J. Bacteriol. 189 (2007) 501-510
    • (2007) J. Bacteriol. , vol.189 , pp. 501-510
    • Brock, J.E.1    Paz, R.L.2    Cottle, P.3    Janssen, G.R.4
  • 3
    • 85045502002 scopus 로고
    • Randomization of genes by PCR mutagenesis
    • Cadwell R.C., and Joyce G.F. Randomization of genes by PCR mutagenesis. PCR Methods Appl. 2 (1992) 28-33
    • (1992) PCR Methods Appl. , vol.2 , pp. 28-33
    • Cadwell, R.C.1    Joyce, G.F.2
  • 4
    • 0027956532 scopus 로고
    • The influence of adenine-rich motifs in the 3′ portion of the ribosome binding site on human IFN-gamma gene expression in Escherichia coli
    • Chen H., Pomeroy-Cloney L., Bjerknes M., Tam J., and Jay E. The influence of adenine-rich motifs in the 3′ portion of the ribosome binding site on human IFN-gamma gene expression in Escherichia coli. J. Mol. Biol. 240 (1994) 20-27
    • (1994) J. Mol. Biol. , vol.240 , pp. 20-27
    • Chen, H.1    Pomeroy-Cloney, L.2    Bjerknes, M.3    Tam, J.4    Jay, E.5
  • 5
    • 0025952258 scopus 로고
    • Codon choice and potential complementarity between mRNA downstream of the initiation codon and bases 1471-1480 in 16S ribosomal RNA affects expression of glnS
    • Faxen M., Plumbridge J., and Isaksson L.A. Codon choice and potential complementarity between mRNA downstream of the initiation codon and bases 1471-1480 in 16S ribosomal RNA affects expression of glnS. Nucleic Acids Res. 19 (1991) 5247-5251
    • (1991) Nucleic Acids Res. , vol.19 , pp. 5247-5251
    • Faxen, M.1    Plumbridge, J.2    Isaksson, L.A.3
  • 6
    • 4944224262 scopus 로고    scopus 로고
    • A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli
    • Gonzalez de Valdivia E.I., and Isaksson L.A. A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli. Nucleic Acids Res. 32 (2004) 5198-5205
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5198-5205
    • Gonzalez de Valdivia, E.I.1    Isaksson, L.A.2
  • 7
    • 0014125616 scopus 로고
    • Comparative study of the events associated with colicin induction
    • Herschman H.R., and Helinski D.R. Comparative study of the events associated with colicin induction. J. Bacteriol. 94 (1967) 691-699
    • (1967) J. Bacteriol. , vol.94 , pp. 691-699
    • Herschman, H.R.1    Helinski, D.R.2
  • 8
    • 0023919906 scopus 로고
    • Replication of ColE2 and ColE3 plasmids: the regions sufficient for autonomous replication
    • Horii T., and Itoh T. Replication of ColE2 and ColE3 plasmids: the regions sufficient for autonomous replication. Mol. Gen. Genet. 212 (1988) 225-231
    • (1988) Mol. Gen. Genet. , vol.212 , pp. 225-231
    • Horii, T.1    Itoh, T.2
  • 9
    • 0023373136 scopus 로고
    • Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli
    • Hui A., and de Boer H.A. Specialized ribosome system: preferential translation of a single mRNA species by a subpopulation of mutated ribosomes in Escherichia coli. Proc. Natl. Acad. Sci. USA 84 (1987) 4762-4766
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4762-4766
    • Hui, A.1    de Boer, H.A.2
  • 10
    • 0028094403 scopus 로고
    • Footprinting mRNA-ribosome complexes with chemical probes
    • Huttenhofer A., and Noller H.F. Footprinting mRNA-ribosome complexes with chemical probes. EMBO J. 13 (1994) 3892-3901
    • (1994) EMBO J. , vol.13 , pp. 3892-3901
    • Huttenhofer, A.1    Noller, H.F.2
  • 11
    • 0029026714 scopus 로고
    • The stability of Escherichia coli lacZ mRNA depends upon the simultaneity of its synthesis and translation
    • Iost I., and Dreyfus M. The stability of Escherichia coli lacZ mRNA depends upon the simultaneity of its synthesis and translation. EMBO J. 14 (1995) 3252-3261
    • (1995) EMBO J. , vol.14 , pp. 3252-3261
    • Iost, I.1    Dreyfus, M.2
  • 12
    • 0027497505 scopus 로고
    • Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element
    • Ito K., Kawakami K., and Nakamura Y. Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element. Proc. Natl. Acad. Sci. USA 90 (1993) 302-306
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 302-306
    • Ito, K.1    Kawakami, K.2    Nakamura, Y.3
  • 13
    • 0023372380 scopus 로고
    • A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins
    • Jacob W.F., Santer M., and Dahlberg A.E. A single base change in the Shine-Dalgarno region of 16S rRNA of Escherichia coli affects translation of many proteins. Proc. Natl. Acad. Sci. USA 84 (1987) 4757-4761
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4757-4761
    • Jacob, W.F.1    Santer, M.2    Dahlberg, A.E.3
  • 14
    • 0025859908 scopus 로고
    • Identification of a plasmid-coded protein required for initiation of ColE2 DNA replication
    • Kido M., Yasueda H., and Itoh T. Identification of a plasmid-coded protein required for initiation of ColE2 DNA replication. Nucleic Acids Res. 19 (1991) 2875-2880
    • (1991) Nucleic Acids Res. , vol.19 , pp. 2875-2880
    • Kido, M.1    Yasueda, H.2    Itoh, T.3
  • 15
    • 0033752611 scopus 로고    scopus 로고
    • Translation during cold adaptation does not involve mRNA-rRNA base pairing through the downstream box
    • La Teana A., Brandi A., O'Connor M., Freddi S., and Pon C.L. Translation during cold adaptation does not involve mRNA-rRNA base pairing through the downstream box. RNA 6 (2000) 1393-1402
    • (2000) RNA , vol.6 , pp. 1393-1402
    • La Teana, A.1    Brandi, A.2    O'Connor, M.3    Freddi, S.4    Pon, C.L.5
  • 16
    • 0023395492 scopus 로고
    • Influence of the codon following the AUG initiation codon on the expression of a modified lacZ gene in Escherichia coli
    • Looman A.C., Bodlaender J., Comstock L.J., Eaton D., Jhurani P., de Boer H.A., and van Knippenberg P.H. Influence of the codon following the AUG initiation codon on the expression of a modified lacZ gene in Escherichia coli. EMBO J. 6 (1987) 2489-2492
    • (1987) EMBO J. , vol.6 , pp. 2489-2492
    • Looman, A.C.1    Bodlaender, J.2    Comstock, L.J.3    Eaton, D.4    Jhurani, P.5    de Boer, H.A.6    van Knippenberg, P.H.7
  • 17
    • 0033000488 scopus 로고    scopus 로고
    • A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli
    • Martin-Farmer J., and Janssen G.R. A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli. Mol. Microbiol. 31 (1999) 1025-1038
    • (1999) Mol. Microbiol. , vol.31 , pp. 1025-1038
    • Martin-Farmer, J.1    Janssen, G.R.2
  • 18
    • 0028173550 scopus 로고
    • Prokaryotic translation: the interactive pathway leading to initiation
    • McCarthy J.E., and Brimacombe R. Prokaryotic translation: the interactive pathway leading to initiation. Trends Genet. 10 (1994) 402-407
    • (1994) Trends Genet. , vol.10 , pp. 402-407
    • McCarthy, J.E.1    Brimacombe, R.2
  • 19
    • 0028356068 scopus 로고
    • Correlation of translation efficiency with the decay of lacZ mRNA in Escherichia coli
    • McCormick J.R., Zengel J.M., and Lindahl L. Correlation of translation efficiency with the decay of lacZ mRNA in Escherichia coli. J. Mol. Biol. 239 (1994) 608-622
    • (1994) J. Mol. Biol. , vol.239 , pp. 608-622
    • McCormick, J.R.1    Zengel, J.M.2    Lindahl, L.3
  • 21
    • 0030781417 scopus 로고    scopus 로고
    • Deletion analysis of cspA of Escherichia coli: requirement of the AT-rich UP element for cspA transcription and the downstream box in the coding region for its cold shock induction
    • Mitta M., Fang L., and Inouye M. Deletion analysis of cspA of Escherichia coli: requirement of the AT-rich UP element for cspA transcription and the downstream box in the coding region for its cold shock induction. Mol. Microbiol. 26 (1997) 321-335
    • (1997) Mol. Microbiol. , vol.26 , pp. 321-335
    • Mitta, M.1    Fang, L.2    Inouye, M.3
  • 22
    • 0035026057 scopus 로고    scopus 로고
    • Evidence against an Interaction between the mRNA downstream box and 16S rRNA in translation initiation
    • Moll I., Huber M., Grill S., Sairafi P., Mueller F., Brimacombe R., Londei P., and Blasi U. Evidence against an Interaction between the mRNA downstream box and 16S rRNA in translation initiation. J. Bacteriol. 183 (2001) 3499-3505
    • (2001) J. Bacteriol. , vol.183 , pp. 3499-3505
    • Moll, I.1    Huber, M.2    Grill, S.3    Sairafi, P.4    Mueller, F.5    Brimacombe, R.6    Londei, P.7    Blasi, U.8
  • 23
    • 0025788228 scopus 로고
    • Interplay of two cis-acting mRNA regions in translational control of sigma 32 synthesis during the heat shock response of Escherichia coli
    • Nagai H., Yuzawa H., and Yura T. Interplay of two cis-acting mRNA regions in translational control of sigma 32 synthesis during the heat shock response of Escherichia coli. Proc. Natl. Acad. Sci. USA 88 (1991) 10515-10519
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 10515-10519
    • Nagai, H.1    Yuzawa, H.2    Yura, T.3
  • 24
    • 35348961039 scopus 로고    scopus 로고
    • Importance of the leader region of mRNA for translation initiation of ColE2 Rep protein
    • Nagase T., Nishio S., and Itoh T. Importance of the leader region of mRNA for translation initiation of ColE2 Rep protein. Plasmid 58 (2007) 249-260
    • (2007) Plasmid , vol.58 , pp. 249-260
    • Nagase, T.1    Nishio, S.2    Itoh, T.3
  • 25
    • 0033529890 scopus 로고    scopus 로고
    • Enhancement of translation by the downstream box does not involve base pairing of mRNA with the penultimate stem sequence of 16S rRNA
    • O'Connor M., Asai T., Squires C.L., and Dahlberg A.E. Enhancement of translation by the downstream box does not involve base pairing of mRNA with the penultimate stem sequence of 16S rRNA. Proc. Natl. Acad. Sci. USA 96 (1999) 8973-8978
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8973-8978
    • O'Connor, M.1    Asai, T.2    Squires, C.L.3    Dahlberg, A.E.4
  • 26
    • 0032142818 scopus 로고    scopus 로고
    • The low level expression of chloramphenicol acetyltransferase (CAT) mRNA in Escherichia coli is not dependent on either Shine-Dalgarno or the downstream boxes in the CAT gene
    • Odjakova M., Golshani A., Ivanov G., Abou Haidar M., and Ivanov I.. The low level expression of chloramphenicol acetyltransferase (CAT) mRNA in Escherichia coli is not dependent on either Shine-Dalgarno or the downstream boxes in the CAT gene. Microbiol. Res. 153 (1998) 173-178
    • (1998) Microbiol. Res. , vol.153 , pp. 173-178
    • Odjakova, M.1    Golshani, A.2    Ivanov, G.3    Abou Haidar, M.4    Ivanov, I..5
  • 27
    • 2642566651 scopus 로고    scopus 로고
    • Enhancement of translation initiation by A/T-rich sequences downstream of the initiation codon in Escherichia coli
    • Qing G., Xia B., and Inouye M. Enhancement of translation initiation by A/T-rich sequences downstream of the initiation codon in Escherichia coli. J. Mol. Microbiol. Biotechnol. 6 (2003) 133-144
    • (2003) J. Mol. Microbiol. Biotechnol. , vol.6 , pp. 133-144
    • Qing, G.1    Xia, B.2    Inouye, M.3
  • 28
    • 0029811326 scopus 로고    scopus 로고
    • Downstream box-anti-downstream box interactions are dispensable for translation initiation of leaderless mRNAs
    • Resch A., Tedin K., Grundling A., Mundlein A., and Blasi U. Downstream box-anti-downstream box interactions are dispensable for translation initiation of leaderless mRNAs. EMBO J. 15 (1996) 4740-4748
    • (1996) EMBO J. , vol.15 , pp. 4740-4748
    • Resch, A.1    Tedin, K.2    Grundling, A.3    Mundlein, A.4    Blasi, U.5
  • 29
    • 0034949816 scopus 로고    scopus 로고
    • Codon and base biases after the initiation codon of the open reading frames in the Escherichia coli genome and their influence on the translation efficiency
    • Sato T., Terabe M., Watanabe H., Gojobori T., Hori-Takemoto C., and Miura K. Codon and base biases after the initiation codon of the open reading frames in the Escherichia coli genome and their influence on the translation efficiency. J. Biochem. (Tokyo) 129 (2001) 851-860
    • (2001) J. Biochem. (Tokyo) , vol.129 , pp. 851-860
    • Sato, T.1    Terabe, M.2    Watanabe, H.3    Gojobori, T.4    Hori-Takemoto, C.5    Miura, K.6
  • 30
    • 0026736324 scopus 로고
    • Translation of the prophage lambda cl transcript
    • Shean C.S., and Gottesman M.E. Translation of the prophage lambda cl transcript. Cell 70 (1992) 513-522
    • (1992) Cell , vol.70 , pp. 513-522
    • Shean, C.S.1    Gottesman, M.E.2
  • 31
    • 0016154301 scopus 로고
    • The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites
    • Shine J., and Dalgarno L. The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. USA 71 (1974) 1342-1346
    • (1974) Proc. Natl. Acad. Sci. USA , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 32
    • 0016610995 scopus 로고
    • Determinant of cistron specificity in bacterial ribosomes
    • Shine J., and Dalgarno L. Determinant of cistron specificity in bacterial ribosomes. Nature 254 (1975) 34-38
    • (1975) Nature , vol.254 , pp. 34-38
    • Shine, J.1    Dalgarno, L.2
  • 33
    • 0025361538 scopus 로고
    • The initiation of translation in E. coli: apparent base pairing between the 16S rRNA and downstream sequences of the mRNA
    • Sprengart M.L., Fatscher H.P., and Fuchs E. The initiation of translation in E. coli: apparent base pairing between the 16S rRNA and downstream sequences of the mRNA. Nucleic Acids Res. 18 (1990) 1719-1723
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1719-1723
    • Sprengart, M.L.1    Fatscher, H.P.2    Fuchs, E.3
  • 34
    • 0030064682 scopus 로고    scopus 로고
    • The downstream box: an efficient and independent translation initiation signal in Escherichia coli
    • Sprengart M.L., Fuchs E., and Porter A.G. The downstream box: an efficient and independent translation initiation signal in Escherichia coli. EMBO J. 15 (1996) 665-674
    • (1996) EMBO J. , vol.15 , pp. 665-674
    • Sprengart, M.L.1    Fuchs, E.2    Porter, A.G.3
  • 35
    • 0014666439 scopus 로고
    • Polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA
    • Steitz J.A. Polypeptide chain initiation: nucleotide sequences of the three ribosomal binding sites in bacteriophage R17 RNA. Nature 224 (1969) 957-964
    • (1969) Nature , vol.224 , pp. 957-964
    • Steitz, J.A.1
  • 36
    • 0011343769 scopus 로고
    • How ribosomes select initiator regions in mRNA: base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli
    • Steitz J.A., and Jakes K. How ribosomes select initiator regions in mRNA: base pair formation between the 3′ terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc. Natl. Acad. Sci. USA 72 (1975) 4734-4738
    • (1975) Proc. Natl. Acad. Sci. USA , vol.72 , pp. 4734-4738
    • Steitz, J.A.1    Jakes, K.2
  • 37
    • 0035941484 scopus 로고    scopus 로고
    • Codon bias at the 3′-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli
    • Stenstrom C.M., Jin H., Major L.L., Tate W.P., and Isaksson L.A. Codon bias at the 3′-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli. Gene 263 (2001) 273-284
    • (2001) Gene , vol.263 , pp. 273-284
    • Stenstrom, C.M.1    Jin, H.2    Major, L.L.3    Tate, W.P.4    Isaksson, L.A.5
  • 38
    • 0028241477 scopus 로고
    • Control of ColE2 plasmid replication: regulation of Rep expression by a plasmid-coded antisense RNA
    • Takechi S., Yasueda H., and Itoh T. Control of ColE2 plasmid replication: regulation of Rep expression by a plasmid-coded antisense RNA. Mol. Gen. Genet. 244 (1994) 49-56
    • (1994) Mol. Gen. Genet. , vol.244 , pp. 49-56
    • Takechi, S.1    Yasueda, H.2    Itoh, T.3
  • 39
    • 0026663105 scopus 로고
    • Interdependence of translation, transcription and mRNA degradation in the lacZ gene
    • Yarchuk O., Jacques N., Guillerez J., and Dreyfus M. Interdependence of translation, transcription and mRNA degradation in the lacZ gene. J. Mol. Biol. 226 (1992) 581-596
    • (1992) J. Mol. Biol. , vol.226 , pp. 581-596
    • Yarchuk, O.1    Jacques, N.2    Guillerez, J.3    Dreyfus, M.4
  • 40
    • 0028179107 scopus 로고
    • Control of ColE2 plasmid replication: negative regulation of the expression of the plasmid-specified initiator protein, Rep, at a posttranscriptional step
    • Yasueda H., Takechi S., Sugiyama T., and Itoh T. Control of ColE2 plasmid replication: negative regulation of the expression of the plasmid-specified initiator protein, Rep, at a posttranscriptional step. Mol. Gen. Genet. 244 (1994) 41-48
    • (1994) Mol. Gen. Genet. , vol.244 , pp. 41-48
    • Yasueda, H.1    Takechi, S.2    Sugiyama, T.3    Itoh, T.4
  • 41
    • 0035958587 scopus 로고    scopus 로고
    • The path of messenger RNA through the ribosome
    • Yusupova G.Z., Yusupov M.M., Cate J.H., and Noller H.F. The path of messenger RNA through the ribosome. Cell 106 (2001) 233-241
    • (2001) Cell , vol.106 , pp. 233-241
    • Yusupova, G.Z.1    Yusupov, M.M.2    Cate, J.H.3    Noller, H.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.