메뉴 건너뛰기




Volumn 32, Issue 17, 2004, Pages 5198-5205

A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; MESSENGER RNA;

EID: 4944224262     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh857     Document Type: Article
Times cited : (65)

References (46)
  • 1
    • 0025365804 scopus 로고
    • Initiation of mRNA translation in prokaryotes
    • Gualerzi,C.O. and Pon,C.L. (1990) Initiation of mRNA translation in prokaryotes. Biochemistry, 29, 5881-5889.
    • (1990) Biochemistry , vol.29 , pp. 5881-5889
    • Gualerzi, C.O.1    Pon, C.L.2
  • 3
    • 0033000488 scopus 로고    scopus 로고
    • A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli
    • Martin-Farmer,J. and Janssen,G.R. (1999) A downstream CA repeat sequence increases translation from leadered and unleadered mRNA in Escherichia coli. Mol. Microbiol., 31, 1025-1038.
    • (1999) Mol. Microbiol. , vol.31 , pp. 1025-1038
    • Martin-Farmer, J.1    Janssen, G.R.2
  • 4
    • 0025348395 scopus 로고
    • Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes
    • Chen,G.F. and Inouye,M. (1990) Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes. Nucleic Acids Res., 18, 1465-1473.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1465-1473
    • Chen, G.F.1    Inouye, M.2
  • 5
    • 0027513392 scopus 로고
    • Effects of consecutive AGG codons on translation in Escherichia coli, demonstrated with a versatile codon test system
    • Rosenberg,A.H., Goldman,E., Dunn,J.J., Studier,F.W. and Zubay,G. (1993) Effects of consecutive AGG codons on translation in Escherichia coli, demonstrated with a versatile codon test system. J. Bacteriol., 175, 716-722.
    • (1993) J. Bacteriol. , vol.175 , pp. 716-722
    • Rosenberg, A.H.1    Goldman, E.2    Dunn, J.J.3    Studier, F.W.4    Zubay, G.5
  • 6
    • 0027960812 scopus 로고
    • Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli
    • Chen,G.-F.T. and Inouye,M. (1994) Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes Dev., 8, 2641-2652.
    • (1994) Genes Dev. , vol.8 , pp. 2641-2652
    • Chen, G.-F.T.1    Inouye, M.2
  • 7
    • 0025952258 scopus 로고
    • Codon choice and potential complementarity between mRNA downstream of the initiation codon and bases 1471-1480 in the 16S ribosomal RNA affects expression of gln S
    • Faxén,M., Plumbridge,J. and Isaksson,L.A. (1991) Codon choice and potential complementarity between mRNA downstream of the initiation codon and bases 1471-1480 in the 16S ribosomal RNA affects expression of gln S. Nucleic Acid Res., 19, 5247-5251.
    • (1991) Nucleic Acid Res. , vol.19 , pp. 5247-5251
    • Faxén, M.1    Plumbridge, J.2    Isaksson, L.A.3
  • 8
    • 0033537948 scopus 로고    scopus 로고
    • Translational enhancement by an element downstream of the initiation codon in Escherichia coli
    • Etchegaray,J.-P. and Inouye,M. (1999) Translational enhancement by an element downstream of the initiation codon in Escherichia coli. J. Biol. Chem., 274, 10079-10085.
    • (1999) J. Biol. Chem. , vol.274 , pp. 10079-10085
    • Etchegaray, J.-P.1    Inouye, M.2
  • 9
    • 0025361538 scopus 로고
    • The initiation of translation in E.coli: Apparent base pairing between the 16S rRNA and downstream sequences of the mRNA
    • Sprengart,M.L., Fatscher,H.P. and Fuchs,E. (1990) The initiation of translation in E.coli: apparent base pairing between the 16S rRNA and downstream sequences of the mRNA. Nucleic Acids Res. 18, 1719-1723.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1719-1723
    • Sprengart, M.L.1    Fatscher, H.P.2    Fuchs, E.3
  • 10
    • 0033529890 scopus 로고    scopus 로고
    • Enhancement of translation by the downstream box does not involve base pairing of mRNA with the penultimate stem sequence of 16S rRNA
    • O'Connor,M., Asai,T., Squires,C.L. and Dahlberg,A.E. (1999) Enhancement of translation by the downstream box does not involve base pairing of mRNA with the penultimate stem sequence of 16S rRNA. Proc. Natl Acad. Sci. USA, 96, 8973-8978.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8973-8978
    • O'Connor, M.1    Asai, T.2    Squires, C.L.3    Dahlberg, A.E.4
  • 11
    • 0035026057 scopus 로고    scopus 로고
    • Evidence against an interaction between the mRNA downstream box and 16S rRNA in translation initiation
    • Moll,I., Huber,M., Grill,S., Sairafi,P., Mueller,F., Brimacombe,R., Londei,P. and Blasi,U. (2001) Evidence against an interaction between the mRNA downstream box and 16S rRNA in translation initiation. J. Bacteriol., 183, 3499-3505.
    • (2001) J. Bacteriol. , vol.183 , pp. 3499-3505
    • Moll, I.1    Huber, M.2    Grill, S.3    Sairafi, P.4    Mueller, F.5    Brimacombe, R.6    Londei, P.7    Blasi, U.8
  • 12
    • 0023395492 scopus 로고
    • Influence of the codon following the AUG initiation codon on the expression of a modified lacZ gene in Escherichia coli
    • Looman,A.C., Bodlaender,J., Comstock,L.J., Eaton,D., Jhurani,P., de Boer,H.A. and van Knippenberg,P.H. (1987) Influence of the codon following the AUG initiation codon on the expression of a modified lacZ gene in Escherichia coli. EMBO J., 6, 2489-2492.
    • (1987) EMBO J. , vol.6 , pp. 2489-2492
    • Looman, A.C.1    Bodlaender, J.2    Comstock, L.J.3    Eaton, D.4    Jhurani, P.5    de Boer, H.A.6    van Knippenberg, P.H.7
  • 13
    • 0035827918 scopus 로고    scopus 로고
    • Cooperative effects by the initiation codon and its flanking regions on translation initiation
    • Stenström,C.M., Holmgren,E. and Isaksson,L.A. (2001) Cooperative effects by the initiation codon and its flanking regions on translation initiation. Gene, 273, 259-265.
    • (2001) Gene , vol.273 , pp. 259-265
    • Stenström, C.M.1    Holmgren, E.2    Isaksson, L.A.3
  • 14
    • 0037123362 scopus 로고    scopus 로고
    • Influences on translation initiation and early elongation by the messenger RNA region flanking the initiation codon at the 3′ side
    • Stenström,C.M. and Isaksson,L.A. (2002) Influences on translation initiation and early elongation by the messenger RNA region flanking the initiation codon at the 3′ side. Gene, 288, 1-8.
    • (2002) Gene , vol.288 , pp. 1-8
    • Stenström, C.M.1    Isaksson, L.A.2
  • 15
    • 0035941484 scopus 로고    scopus 로고
    • Codon bias at the 3′-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli
    • Stenström,C.M., Jin,H., Major,L.L., Tate,W.P. and Isaksson,L.A. (2001) Codon bias at the 3′-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli. Gene, 263, 273-284.
    • (2001) Gene , vol.263 , pp. 273-284
    • Stenström, C.M.1    Jin, H.2    Major, L.L.3    Tate, W.P.4    Isaksson, L.A.5
  • 17
    • 0017606476 scopus 로고
    • Genetic studies of the lac repressor
    • Coulondre,C. and Miller,J.H. (1977) Genetic studies of the lac repressor. J. Mol. Biol., 117, 525-575.
    • (1977) J. Mol. Biol. , vol.117 , pp. 525-575
    • Coulondre, C.1    Miller, J.H.2
  • 18
    • 0037102410 scopus 로고    scopus 로고
    • Cis control of gene expression in E.coli by ribosome queuing at an inefficient translational stop signal
    • Jin,H., Björnsson,A. and Isaksson,L.A. (2002) Cis control of gene expression in E.coli by ribosome queuing at an inefficient translational stop signal. EMBO J., 21, 4357-4367.
    • (2002) EMBO J. , vol.21 , pp. 4357-4367
    • Jin, H.1    Björnsson, A.2    Isaksson, L.A.3
  • 19
    • 0026611888 scopus 로고
    • Cobalamin (vitamin B12) repression of the Cob operon in Salmonella typhimurium requires sequences within the leader and the first translated open reading frame
    • Richter-Dahlfors,A.A. and Andersson,D.I. (1992) Cobalamin (vitamin B12) repression of the Cob operon in Salmonella typhimurium requires sequences within the leader and the first translated open reading frame. Mol. Microbiol., 6, 743-749.
    • (1992) Mol. Microbiol. , vol.6 , pp. 743-749
    • Richter-Dahlfors, A.A.1    Andersson, D.I.2
  • 20
    • 0023777735 scopus 로고
    • Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli
    • Amann,E., Ochs,B. and Abel,K.J. (1988) Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene, 69, 301-315.
    • (1988) Gene , vol.69 , pp. 301-315
    • Amann, E.1    Ochs, B.2    Abel, K.J.3
  • 22
    • 0032246224 scopus 로고    scopus 로고
    • The analysis of translational activity using a reporter gene constructed from repeats of an antibody-binding domain from protein A
    • Björnsson,A., Mottagui-Tabar,S. and Isaksson,L.A. (1998) The analysis of translational activity using a reporter gene constructed from repeats of an antibody-binding domain from protein A. Methods Mol. Biol., 77, 75-91.
    • (1998) Methods Mol. Biol. , vol.77 , pp. 75-91
    • Björnsson, A.1    Mottagui-Tabar, S.2    Isaksson, L.A.3
  • 23
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews,D.H., Sabina,J., Zuker,M. and Turner,D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 24
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • Barciszewski,J. and Clark,B.F.C. (eds), NATO ASI Series, Kluwer Academic Publishers
    • Zuker,M., Mathews,D.H. and Turner,D.H. (1999) Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In Barciszewski,J. and Clark,B.F.C. (eds), RNA Biochemistry and Biotechnology. NATO ASI Series, Kluwer Academic Publishers, pp. 11-43.
    • (1999) RNA Biochemistry and Biotechnology , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3
  • 25
    • 0030035417 scopus 로고    scopus 로고
    • Modulation of lambda integrase synthesis by rare arginine tRNA
    • Zahn,K. and Landy,A. (1996) Modulation of lambda integrase synthesis by rare arginine tRNA. Mol. Microbiol., 21, 69-76.
    • (1996) Mol. Microbiol. , vol.21 , pp. 69-76
    • Zahn, K.1    Landy, A.2
  • 26
    • 0028907431 scopus 로고
    • Consecutive low-usage leucine codons block translation only when near the 5′ end of a message in Escherichia coli
    • Goldman,E., Rosenberg,A.H., Zubay,G. and Studier,F.W. (1995) Consecutive low-usage leucine codons block translation only when near the 5′ end of a message in Escherichia coli. J. Mol. Biol., 245 467-473.
    • (1995) J. Mol. Biol. , vol.245 , pp. 467-473
    • Goldman, E.1    Rosenberg, A.H.2    Zubay, G.3    Studier, F.W.4
  • 27
    • 0042065209 scopus 로고    scopus 로고
    • The pair of arginine codons AGA AGG close to the initiation codon of the lambda int gene inhibits cell growth and protein synthesis by accumulating peptidyl-tRNAArg4
    • Olivares-Trejo,J.J., Bueno-Martinez,J.G., Guarneros,G. and Hernandez-Sanchez,J. (2003) The pair of arginine codons AGA AGG close to the initiation codon of the lambda int gene inhibits cell growth and protein synthesis by accumulating peptidyl-tRNAArg4. Mol. Microbiol. 49, 1043-1049.
    • (2003) Mol. Microbiol. , vol.49 , pp. 1043-1049
    • Olivares-Trejo, J.J.1    Bueno-Martinez, J.G.2    Guarneros, G.3    Hernandez-Sanchez, J.4
  • 28
    • 0034555130 scopus 로고    scopus 로고
    • Sequestration of specific tRNA species cognate to the last sense codon of an overproduced gratuitous protein
    • Menez,J., Heurgue-Hamard,V. and Buckingham,R.H. (2000) Sequestration of specific tRNA species cognate to the last sense codon of an overproduced gratuitous protein. Nucleic Acids Res., 28, 4725-4732.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4725-4732
    • Menez, J.1    Heurgue-Hamard, V.2    Buckingham, R.H.3
  • 29
    • 0000516715 scopus 로고
    • Translation of the sequence AGG-AGG yields 50% ribosomal frame shift
    • Spanjaard,R.A. and van Duin,J. (1988) Translation of the sequence AGG-AGG yields 50% ribosomal frame shift. Proc. Natl Acad. Sci. USA, 85, 7967-7971.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 7967-7971
    • Spanjaard, R.A.1    van Duin, J.2
  • 30
    • 0037465682 scopus 로고    scopus 로고
    • Production of recombinant thermostable proteins expressed in Escherichia coli: Completion of protein synthesis is the bottleneck
    • Sorensen,H.P., Sperling-Petersen,H.U. and Mortensen,K.K. (2003) Production of recombinant thermostable proteins expressed in Escherichia coli: completion of protein synthesis is the bottleneck. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 786, 207-214.
    • (2003) J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. , vol.786 , pp. 207-214
    • Sorensen, H.P.1    Sperling-Petersen, H.U.2    Mortensen, K.K.3
  • 31
    • 0024825088 scopus 로고
    • High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product
    • Brinkmann,U., Mattes,R.E. and Buckel,P. (1989) High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product. Gene, 85, 109-114.
    • (1989) Gene , vol.85 , pp. 109-114
    • Brinkmann, U.1    Mattes, R.E.2    Buckel, P.3
  • 32
    • 0028036559 scopus 로고
    • Control of translation by mRNA secondary structure in Escherichia coli
    • de Smit,M.H. and van Duin,J. (1994) Control of translation by mRNA secondary structure in Escherichia coli. J. Mol. Biol., 244 144-150.
    • (1994) J. Mol. Biol. , vol.244 , pp. 144-150
    • de Smit, M.H.1    van Duin, J.2
  • 33
    • 0021731777 scopus 로고
    • Escherichia coli ribosomes translate in vivo with variable rate
    • Pedersen,S. (1984) Escherichia coli ribosomes translate in vivo with variable rate. EMBO J., 3, 2895-2898.
    • (1984) EMBO J. , vol.3 , pp. 2895-2898
    • Pedersen, S.1
  • 34
    • 0024405193 scopus 로고
    • Codon usage determines translation rate in Escherichia coli
    • Sørensen,M.A., Kurland,C.G. and Pedersen,S. (1989) Codon usage determines translation rate in Escherichia coli. J. Mol. Biol. 207, 365-377.
    • (1989) J. Mol. Biol. , vol.207 , pp. 365-377
    • Sørensen, M.A.1    Kurland, C.G.2    Pedersen, S.3
  • 35
    • 0024465711 scopus 로고
    • Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli
    • Bonekamp,F., Dalböge,H., Christensen,T. and Jensen,K.F. (1989) Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli. J. Bacteriol., 171, 5812-5816.
    • (1989) J. Bacteriol. , vol.171 , pp. 5812-5816
    • Bonekamp, F.1    Dalböge, H.2    Christensen, T.3    Jensen, K.F.4
  • 36
    • 7444269408 scopus 로고
    • Measurement of translation rates in vivo at individual codons and implication, of these rate difference for gene expression
    • McCarthy,J.E.G. and Tuite,M.F. (eds), Springer-Verlag Berlin, Heidelberg
    • Sørensen,M.A., Jensen,K.F. and Pedersen,S. (1990) Measurement of translation rates in vivo at individual codons and implication, of these rate difference for gene expression. In McCarthy,J.E.G. and Tuite,M.F. (eds), Post-Transcriptional of Gene Expression. Springer-Verlag Berlin, Heidelberg, Vol. H 49, pp. 207-216.
    • (1990) Post-Transcriptional of Gene Expression , vol.H49 , pp. 207-216
    • Sørensen, M.A.1    Jensen, K.F.2    Pedersen, S.3
  • 37
    • 0024962419 scopus 로고
    • Rates of aminoacyl-tRNA selection at 29 sense codons in vivo
    • Curran,J.F. and Yarus,M. (1989) Rates of aminoacyl-tRNA selection at 29 sense codons in vivo. J. Mol. Biol., 209, 65-77.
    • (1989) J. Mol. Biol. , vol.209 , pp. 65-77
    • Curran, J.F.1    Yarus, M.2
  • 38
    • 0022429084 scopus 로고
    • Structureof ribosome-bound messenger RNA as revealed by enzymatic accessibility studies
    • Kang,C. and Cantor,C.R. (1985) Structureof ribosome-bound messenger RNA as revealed by enzymatic accessibility studies. J. Mol. Biol., 181, 241-251.
    • (1985) J. Mol. Biol. , vol.181 , pp. 241-251
    • Kang, C.1    Cantor, C.R.2
  • 39
    • 0028052055 scopus 로고
    • How the ribosome moves along the mRNA during protein synthesis
    • Beyer,D., Skripkins,E., Wadzack,J. and Nierhaus,K.H., (1994) How the ribosome moves along the mRNA during protein synthesis. J. Biol. Chem., 269, 30713-30717.
    • (1994) J. Biol. Chem. , vol.269 , pp. 30713-30717
    • Beyer, D.1    Skripkins, E.2    Wadzack, J.3    Nierhaus, K.H.4
  • 40
    • 0028094403 scopus 로고
    • Footprinting mRNA-ribosome complexes with chemical probes
    • Hüttenhofer,A. and Noller,H.F. (1994) Footprinting mRNA-ribosome complexes with chemical probes. EMBO J., 13, 3892-3901.
    • (1994) EMBO J. , vol.13 , pp. 3892-3901
    • Hüttenhofer, A.1    Noller, H.F.2
  • 42
    • 0013936167 scopus 로고
    • Codon-anticodon pairing: The wobble hypothesis
    • Crick,F.H. (1966) Codon-anticodon pairing: the wobble hypothesis. J Mol Biol., 19, 548-555.
    • (1966) J. Mol. Biol. , vol.19 , pp. 548-555
    • Crick, F.H.1
  • 43
    • 0028899217 scopus 로고
    • Decoding with the A: I wobble pair is inefficient
    • Curran,J.F. (1995) Decoding with the A:I wobble pair is inefficient. Nucleic Acids Res., 23, 683-688.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 683-688
    • Curran, J.F.1
  • 44
    • 0029923751 scopus 로고    scopus 로고
    • Structure of the C-terminal end of the nascent peptide influences translation termination
    • Björnsson,A., Mottagui-Tabar,S. and Isaksson,L.A. (1996) Structure of the C-terminal end of the nascent peptide influences translation termination. EMBO J., 15, 1696-1704.
    • (1996) EMBO J. , vol.15 , pp. 1696-1704
    • Björnsson, A.1    Mottagui-Tabar, S.2    Isaksson, L.A.3
  • 45
    • 0017115214 scopus 로고
    • Peptidyl transfer RNA dissociates during protein synthesis from ribosomes of Escherichia coli
    • Menninger,J.R. (1976) Peptidyl transfer RNA dissociates during protein synthesis from ribosomes of Escherichia coli. J. Biol. Chem., 251, 3392-3398.
    • (1976) J. Biol. Chem. , vol.251 , pp. 3392-3398
    • Menninger, J.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.