Patterns of genetic and eco-geographical diversity in Spanish barleys

Theoretical and Applied Genetics

Volumn 116, Issue 2, 2008, Pages 271-282

  Yahiaoui, S ^a,e   Igartua, Ernesto ^a,e   Moralejo, M ^b   Ramsay, L ^c   Molina Cano, J L ^b   Ciudad, F J ^d   Lasa, J M ^a,e   Gracia, M P ^a,e   Casas, A M ^a,e  

^a CSIC   (Spain)

^b IRTA   (Spain)

^c SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^d INSTITUTO TECNOLÓGICO AGRARIO DE CASTILLA Y LEÓN   (Spain)

^e NONE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; CLIMATOLOGY; CLUSTER ANALYSIS; CROPS; ENVIRONMENTAL ENGINEERING; POLYMORPHISM;

EUROPEAN CULTIVARS; GENETIC DIVERGENCE; SPANISH BARLEY CORE COLLECTION (SBCC);

GENETIC ENGINEERING;

ANALYSIS OF VARIANCE; ARTICLE; BARLEY; BIODIVERSITY; BIOLOGICAL MODEL; BREEDING; CLIMATE; CLUSTER ANALYSIS; COMPARATIVE STUDY; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; METHODOLOGY; POPULATION GENETICS; SPAIN; VARIABLE NUMBER OF TANDEM REPEAT;

ANALYSIS OF VARIANCE; BIODIVERSITY; BREEDING; CLIMATE; CLUSTER ANALYSIS; GENETICS, POPULATION; GEOGRAPHY; HORDEUM; MINISATELLITE REPEATS; MODELS, GENETIC; SPAIN; VARIATION (GENETICS);

HORDEUM; HORDEUM VULGARE;

EID: 37549007959     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-007-0665-3     Document Type: Article

References (53)

1. Baek HJ, Beharav A, Nevo E (2003) Ecological-genomic diversity of microsatellites in wild barley, Hordeum spontaneum, populations in Jordan. Theor Appl Genet 106:397-410
2. Bassam B J, Caetano-Anolles G, Gresshoff P M (1991) Fast and sensitive silver staining of DNA in polyacrilamide gels. Anal Biochem 196:80-83
3. Baumer M, Cais R (2000) Abstammung der Gerstensorten. Ed. Bayerische Landesanstalt für BodenKultur und Pflanzenbau, 109 p
4. Briggs DE (1978) Barley. Chapman & Hall, London, pp 445-480
5. Casas AM, Igartua E, Vallés MP, Molina-Cano JL (1998) Genetic diversity of barley cultivars grown in Spain, estimated by RFLP, similarity and coancestry coefficients. Plant Breed 117:429-435
6. Casas AM, Yahiaoui S, Ciudad F, Igartua E (2005) Distribution of MWG699 polymorphism in Spanish European barleys. Genome 48:41-45
7. Chao S, Zhang W, Dubcovsky J, Sorrells M (2007) Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L) germplasm representing different market classes. Crop Sci 47:1018-1030
8. Ellis RP, McNicol JW, Baird E, Booth A, Lawrence P, Powell W (1997) The use of AFLPs to examine genetic relatedness in barley. Mol Breed 3:359-369
9. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587
10. Fischbeck G (1992) Barley cultivar development in Europe-success in the past and possible changes in the future. In: Munck L (ed) Barley genetics VI, vol II. Munksgaard International Publishers Ltd, Copenhagen, pp 885-901
11. Garris AJ, McCouch SR, Kresovish S (2003) Population stucture and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics 165:759-769
12. Graner A, Ludwig WF, Melchinger AE (1994) Relationships among European barley germplasm: II. Comparison of RFLP and pedigree data. Crop Sci 34:1199-1205
13. Goldstein DB, Ruiz Linares A, Cavalli-Sforza LL, Feldman MW (1995) An evaluation of genetic distances for use with microsatellite loci. Genetics 139:463-471
14. Igartua E, Gracia MP, Lasa JM, Medina B, Molina-Cano JL, Montoya JL, Romagosa I (1998) The Spanish barley core collection. Genet Resour Crop Env 45:475-481
15. Ivandic V, Hackett CA, Nevo E, Keith R, Thomas WTB, Forster B (2002) Analysis of simple sequence repeats (SSRs) in wild barley from the Fertile Crescent: associations with ecology, geography and flowering time. Plant Mol Biol 48:511-527
16. Ivandic V, Thomas WTB, Nevo E, Zhang Z, Forster B (2003) Associations of simple sequence repeats with quantitative trait variation including biotic and abiotic stress tolerance in Hordeum spontaneum. Plant Breed 122:300-304
17. Jung M, Ching A, Bhattraramakki D, Dolan M, Tingey S, Morgante M, Rafalski A (2004) Linkage disequilibrium and sequence diversity in a 500-kbp region around the adh1 locus in elite maize germplasm. Theor Appl Genet 109:681-689
18. Karakousis A, Barr AR, Chalmers KJ, Ablett GA, Holton TA, Henry RJ, Lim P, Langridge P (2003) Potential of SSR markers for plant breeding and variety identification in Australian barley germplasme. Aust J Agric Res 54:1197-1210
19. Koebner RMD, Donini P, Reeves JC, Cooke RJ, Law JR (2003) Temporal flux in the morphological and molecular diversity of UK barley. Theor Appl Genet 106:550-558
20. Komatsuda T, Maxim P, Sentil N, Mano Y (2004) High-density AFLP map of nonbrittle rachis 1 (btr1) and (btr2) genes in barley (Hordeum vulgare L.). Theor Appl Genet 109:986-995
21. Kraakman ATW, Niks RE, Van der Berg PMMM, Stam P, Van Eeuwijk FA (2004) Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168:435-446
22. Lasa JM, Igartua E, Ciudad FJ, Codesal P, García EV, Gracia MP, Medina B, Romagosa I, Molina-Cano JL, Montoya JL (2001) Morphological and agronomical diversity patterns in the Spanish barley core collection. Hereditas 135:217-225
23. Macaulay M, Ramsay L, Powell W, Waugh R (2001) A representative, highly informative 'genotyping set' of barley SSRs. Theor Appl Genet 102:801-809
24. Maestri E, Malcevschi A, Massari A, Marmiroli N (2002) Genomic analysis of cultivated barley (Hordeum vulgare) using sequence-tagged molecular markers. Estimates of divergence based on RFLP and PCR markers derived from stress-responsive genes, and simple-sequence repeats (SSRs). Mol Genet Genomics 267:186-201
25. Malysheva-Otto LV, Ganal MW, Röder MS (2006) Analysis of molecular diversity, population structure and linkage disequilibrium in worldwide cultivated barley germplasm (Hordeum vulgare L.). BMC Genetics 7:6-19
26. Matus IA, Hayes PM (2002) Genetic diversity in three groups of barley germplasm assessed by simple sequence repeats. Genome 45:1095-1106
27. Melchinger AE, Graner A, Singh M, Messmer MM (1994) Relationships among European barley germplasm: I. Genetic diversity among winter and spring cultivars revealed by RFLPs. Crop Sci 34:1191-1199
28. Molina-Cano JL, Fra-Mon P, Salcedo G, Aragoncillo C, Roca de Togores F, García-Olmedo F (1987) Morocco as a possible center for barley: biochemical and agromorphological evidence. Theor Appl Genet 98:913-918
29. Molina-Cano JL, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W (2005) Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theor Appl Genet 110:613-619
30. Moralejo M, Romagosa I, Salcedo G, Sànchez-Monge R, Molina-Cano JL (1994) On the origin of Spanish two-rowed barleys. Theor Appl Genet 87:829-836
31. Morrell PL, Clegg MT (2007) Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent. PNAS 104:3289-3294
32. Morris ML, Belaid A, Byerlee D (1991) Wheat and barley production in rainfed marginal environments of the developing world. Part 1 of 1990-91 CIMMYT world wheat facts and trends: wheat and barley production in rainfed marginal environments of the developing world.CIMMYT, Mexico
33. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323
34. Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W (2005) Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biol J Linn Soc 84:205-224
35. Olsen KM, Halldorsdottir SS, Stinchcombe JR, Weining C, Schmitt J Purugganan MD (2004) Linkage disequilibrium mapping of Arapidosis CRY2 flowering times alleles. Genetics 167:1361-1369
36. Orabi J, Backes G, Wolday A, Yahyaoui A, Jahoor A (2007) The Horn of Africa as a centre of barley diversification and a potential domestication site. Theor Appl Genet 114:1117-1127
37. Pandey M, Wagner C, Friedt W, Ordon F (2006) Genetic relatedness and population differentiation of Himalayan hulless barley (Hordeum vulgare L.) landraces inferred with SSRs. 167:1361-1369. Theor Appl Genet 113:715-729
38. Papadakis J (1975) Climates of the world and their agricultural potentialities. Edición Argentina, Buenos Aires, 200 pp
39. Pillen K, Binder A, Kreuzkam B, Ramsay L, Waugh R, Förster J, Léon J (2000) Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars. Theor Appl Genet 101:652-660
40. Ramsay L, Macaulay M, degli Ivanissevich S, MacLean K, Cardle L, Fuller J, Edwards KJ, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156:1997-2005
41. Remington DL, Thornsberry JM, Matsuoka Y, Wilson LM, Whitt SR, Doebley J, Kresovich S, Goodman MM, Buckler IV ES (2001) Structure of linkage disequilibrium and phenotypic associations in the Maize genome. Proc Natl Acad Sci USA 98:11479-11484
42. Rohlf FJ (2000) NTSYSpc, numerical taxonomy and multivariate analysis system, version 2.1. Exeter Software, New York
43. Ruimy A, Dedieu G, Saugier B (1996) TURC: a diagnostic model of continental gross primary productivity and net primary productivity. Global Biogeochem Cycles 10(2):269-285
44. Russell J, Fuller J, Young G, Thomas B, Taramino G, Macaulay M, Waugh R, Powell W (1997) Discriminating between barley genotypes using microsatellite markers. Genome 40:442-450
45. Russell JR, Ellis RP, Thomas WTB, Waugh R, Provan J, Booth A, Fuller J, Lawrence P, Young G, Powell W (2000) A retrospective analysis of spring barley germplasm development from 'foundation genotypes' to currently successful cultivars. Mol Breed 6:553-568
46. Russell JR, Fuller J, Baum M, Ceccarelli S, Grando S, Powell W (2003) Patterns of polymorphism detected in the chloroplast and nuclear genomes of barley landraces samples from Syria and Jordan. Theor Appl Genet 107:413-421
47. SAS Institute (1988) SAS/STATTM user's guide, release 6.03, edition. SAS Institute Inc., Cary, 1028 p
48. Schneider S, Roessli D, Excoffier L (2000) Arlequin v. 2.000. A software for population genetic data analysis. Genetics and Biometry Laboratory. University of Geneva, Switzerland
49. Sjakste TG, Rashal I, Röder MS (2003) Inheritance of microsatellite alleles in pedigrees of Latvian barley varieties and related European ancestors. Theor Appl Genet 106:539-549
50. Struss D, Plieske J (1998) The use of microsatellite for detection genetic diversity in barley populations. Theor Appl Genet 97:308-315
51. Tanno K, Takaiwa F, Oka S, Komatsuda T (1999) A nucleotide sequence linked to the vrs1 locus for studies of differentiation in cultivated barley (Hordeum vulgare L.). Heriditas 130:77-82
52. Tanno K, Taketa S, Takeda K, Komatsuda T (2002) A DNA marker closely linked to the vrs 1 locus (row type gene) indicates multiple origins of six rowed cultivated barley. (Hordeum vulgare L.). Theor Appl Genet 104:54-60
53. Turpeinen T, Tenhola T, Manninen O, Nevo E, Nissilä E (2001) Microsatellite diversity associated with ecological factors in Hordeum spontaneum populations in Israel. Mol Ecol 10:1577-1591