Potential of SSR markers for plant breeding and variety identification in Australian barley germplasm

Australian Journal of Agricultural Research

Volumn 54, Issue 11-12, 2003, Pages 1197-1210

  Karakousis, A ^a   Barr, A R ^a   Chalmers, K J ^a   Ablett, G A ^b   Holton, T A ^b   Henry, R J ^b   Lim, P ^a   Langridge, P ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

^b SOUTHERN CROSS UNIVERSITY   (Australia)

Author keywords

Barley breeding; Discrimination of Australian barley genotypes; MAS; PIC; SSR

Indexed keywords

BARLEY; GENETIC MARKER;

HORDEUM VULGARE SUBSP. VULGARE;

EID: 1642525105     PISSN: 00049409     EISSN: None     Source Type: Journal    
DOI: 10.1071/ar02178     Document Type: Article

References (43)

1. Asayama S, Barr AR, Jefferies SP, Logue SJ, Pallotta MA (2000) Relationship between extract, diastatic power and protein on QTL mapping. In 'Abstracts and data of papers to be presented at the 99th Meeting of the Japanese Society of Breeding'. Breeding Research, Vol. 3, extra issue 1, p. 239 (in Japanese).
2. Barr AR, Chalmers KJ, Karakousis A, Kretschmer JM, Manning S, Lance RCM, Lewis J, Jeffries SP, Langridge P (1998) RFLP mapping of a new cereal cyst nematode resistance locus in barley. Plant Breeding 117, 185-187.
3. Barr AR, Jefferies SP, Broughton S, Chalmers KJ, Kretschmer JM, Boyd WJR, Collins HM, Roumeliotis S, Logue SJ, Coventry SJ, Moody DB, Read BJ, Poulsen D, Lance RCM, Platz GJ, Park RF, Panozzo JF, Karakousis A, Lim P, Verbyla AP, Eckermann PJ (2003a) Mapping and QTL analysis of the barley population Alexis x Sloop. Australian Journal of Agricultural Research 54, 1117-1123.
4. Barr AR, Karakousis A, Lance RCM, Logue SJ, Manning S, Chalmers KJ, Kretschmer JM, Boyd WJR, Collins HM, Roumeliotis S, Coventry SJ, Moody DB, Read BJ, Poulsen D, Li CD, Platz GJ, Inkerman PA, Panozzo JF, Cullis BR, Smith AB, Lim P, Langridge P (2003b) Mapping and QTL analysis of the barley population Chebec x Harrington. Australian Journal of Agricultural Research 54, 1125-1130.
5. Becker J, Heun M (1995) Barley microsatellites - allele variation and mapping. Plant Molecular Biology 27, 835-845.
6. Clancy JA, Jitkov VA, Han F, Ullrich SE (1996) Barley tissue as direct template for PCR: a practical breeding tool. Molecular Breeding 2, 181-183.
7. Collins HM, Logue SJ, Jefferies SP, Barr AR (2000) Using QTL mapping to improve our understanding of malt extract. 'In 8th International Barley Genetics Symposium'. (Ed. S Logue) Vol. 2, pp. 225-227. (Department of Plant Science, University of Adelaide; Adelaide, S. Aust.)
8. Collins NC, Paltridge NG, Ford CM, Symons RH (1996) The Yd2 gene for barley yellow dwarf virus resistance maps close to the centromere on the long arm of barley chromosome 3. Theoretical and Applied Genetics 92, 858-864. doi:10.1007/S001220050203.
9. Emebiri LC, Moody DB, Panozzo JF, Chalmers KJ, Kretschmer JM, Ablett GA (2003) Identification of QTLs associated with variations in grain protein concentration in two-row barley. Australian Journal of Agricultural Research 54, 1211-1221.
10. Garvin DF, Millergarvin JE, Viccars EA, Jacobsen JV, Brown AHD (1998) Identification of molecular markers linked to Ant28-484, a mutation that eliminates proanthocyanidin production in barley seeds. Crop Science 38, 1250-1255.
11. Harker N, Rampling LR, Shariflou MR, Hayden MJ, Holton TA, Morell MK, Sharp PJ, Henry RJ, Edwards KJ (2001) Microsatellites as markers for Australian wheat improvement. Australian Journal of Agricultural Research 52, 1121-1130. doi:10.1071/AR01025.
12. Jefferies SP, Barr AR, Karakousis A, Kretschmer JM, Manning S, Chalmers KJ, Nelson JC, Islam A, Langridge P (1999) Mapping of chromosome regions conferring boron toxicity tolerance in barley (Hordeum vulgare L). Theoretical and Applied Genetics 98, 1293-1303. doi:10.1007/S001220051195.
13. Karakousis A (2002) The development, identification and application of SSR markers for use in Australian barley (Hordeum vulgare L) breeding programs. PhD thesis, Department of Plant Science, University of Adelaide, Australia.
14. Karakousis A, Barr AR, Kretschmer JM, Manning S, Jefferies SP, Chalmers KJ, Islam AKM, Langridge P (2003a) Mapping and QTL analysis of the barley population Clipper x Sahara. Australian Journal of Agricultural Research 54, 1137-1140.
15. Karakousis A, Barr AR, Kretschmer JM, Manning S, Logue SJ, Roumeliotis S, Collins HM, Chalmers KJ, Li CD, Lance RCM, Langridge P (2003b) Mapping and QTL analysis of the barley population Galleon x Haruna Nijo. Australian Journal of Agricultural Research 54, 1131-1135.
16. Karakousis A, Chalmers KJ, Barr AR, Langridge P (2000) Identification of SSR markers for use in Australian barley breeding programs. 'In 8th International Barley Genetics Symposium'. (Ed. S Logue) Vol. 3, pp. 64-66. (Department of Plant Science, University of Adelaide: Adelaide, S. Aust.)
17. Karakousis A, Gustafson JP, Chalmers KJ, Barr AR, Langridge P (2003c) A consensus map of barley integrating SSR, RFLP, and AFLP markers. Australian Journal of Agricultural Research 54, 1173-1185.
18. Kleinhofs A, Kilian A, Maroof MAS, Biyashev RM, Hayes P, Chen FQ, Lapitan N, Fenwick A, Blake TK, Kanazin V, Ananiev E, Dahleen L, Kudrna D, Bollinger J, Knapp SJ, Liu B, Sorrells M, Heun M, Franckowiak JD, Hoffman D, Skadsen R, Steffenson BJ (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome. Theoretical and Applied Genetics 86, 705-712.
19. Kraic J, Zakova M, Gregova E (1998) Comparison of differentiation capability of RAPD and SSR markers in commercial barley (Hordeum vulgare L) cultivars. Cereal Research Communications 26, 375-382.
20. Kretschmer JM, Chalmers KJ, Manning S, Karakousis A, Barr AR, Islam A, Logue SJ, Choe YW, Barker SJ, Lance RCM, Langridge P (1997) RFLP Mapping of the Ha2 cereal cyst nematode resistance gene in barley. Theoretical and Applied Genetics 94, 1060-1064. doi:10.1007/S001220050515.
21. Liu ZW, Biyashev RM, Maroof MAS (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theoretical and Applied Genetics 93, 869-876.
22. Macaulay M, Ramsay L, Powell W, Waugh R (2001) A representative, highly informative 'genotyping set' of barley SSRs. Genetics 102, 801-809. doi:10.1007/S001220000487.
23. Manly KF, Olson JM (1999) Overview of QTL mapping software and introduction to Map Manager QT. Mammalian Genome 10, 327-334. doi:10.1007/S003359900997.
24. Minella E, Sorrells ME (1997) Inheritance and chromosome location of Alp, a gene controlling aluminium tolerance in Dayton barley. Plant Breeding 116, 465-469.
25. Pallotta MA, Asayama S, Reinheimer JM, Davies PA, Barr AR, Jefferies SP, Chalmers KJ, Lewis J, Collins HM, Roumeliotis S, Logue SJ, Coventry SJ, Lance RCM, Karakousis A, Lim P, Verbyla AP, Eckermann PJ (2003) Mapping and QTL analysis of the barley population Amagi Nijo x W12585. Australian Journal of Agricultural Research 54, 1141-1144.
26. Pallotta MA, Graham GC, Langridge P, Sparrow DHB, Barker SJ (2000) RFLP mapping of manganese efficiency in barley. Theoretical and Applied Genetics. 101, 1108-1108.
27. Pillen K, Binder A, Kreuzkam B, Ramsay L, Waugh R, Forster J, Leon J (2000) Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars. Theoretical and Applied Genetics 101, 652-660. doi:10.1007/S001220051527.
28. Raman H, Karakousis A, Moroni S, Raman R, Read B (2001) Development, validation and allele diversity of microsatellite markers closely linked with the Alp locus associated with aluminium tolerance to barley. In '10th Australian Barley Technical Symposium'. Canberra, Australia.
29. Ramsay L, Macaulay M, Mclean K, Fuller J, Edwards K, Tuvesson S, Morgante M, degli Ivanissivich S, Marmiroli N, Maesti E, Massari A, Powell W, Waugh R (2000) A simple sequence repeat based linkage map of barley. Genetics 156, 1997-2005.
30. Read BJ, Raman H, McMichael G, Chalmers KJ, Ablett GA, Platz GJ, Raman R, Genger RK, Boyd WJR, Li CD, Grime CR, Park RF, Wallwork H, Prangnell R, Lance RCM (2003) Mapping and QTL analysis of the barley population Sloop x Halcyon. Australian Journal of Agricultural Research 54, 1145-1153.
31. Russell JR, Fuller JD, Macaulay M, Hatz BG, Jahoor A, Powell W, Waugh R (1997) Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theoretical and Applied Genetics 95, 714-722. doi:10. 1007/S001220050617.
32. Sagahi-Maroof MAS, Biyashev RM, Yang GP, Zhang Q, Allard RW (1994) Extraordinarily polymorphic microsatellite DNA in barley - species diversity, chromosomal locations, and population dynamics. Proceedings of the National Academy of Sciences of the United States of America 91, 5466-5470.
33. Saini HS, Shepherd M, Henry RJ (1999) Microwave extraction of total genomic DNA from barley grains for use in PCR. Journal of the Institute of Brewing 105, 185-190.
34. Simons G, Vanderlee T, Diergaarde P, Vandaelen R, Groenendijk J, Frijters A, Buschges R, Hollricher K, Topsch S, Schulzelefert P, Salamini F, Zabeau M, Vos P (1997) AFLP-based fine mapping of the mlo gene to a 30-Kb DNA segment of the barley genome. Genomics 44, 61-70. doi:10.1006/GENO.1997.4844.
35. Steiner JJ, Poklemba CJ, Fjellstrom RG, Elliott LF (1995) A rapid one tube genomic DNA extraction process for PCR and RAPD analyses. Nucleic Acids Research 23, 2569-2570.
36. Struss D, Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97, 308-315. doi:10.1007/S001220050900.
37. Thomas WTB, Baird E, Fuller JD, Lawrence P, Young GR, Russell J, Ramsay L, Waugh R, Powell W (1998) Identification of a QTL decreasing yield in barley linked to mlo powdery mildew resistance. Molecular Breeding 4, 381-393.
38. Tuvesson S, Vonpost L, Ohlund R, Hagberg P, Graner A, Svitashev S, Schehr M, Elovsson R (1998) Molecular breeding for the Bammv/Baymv resistance gene Ym4 in winter barley. Plant Breeding 117, 19-22.
39. Wang H, Qi M, Cutler AJ (1993) A simple method of preparing plant samples for PCR. Nucleic Acids Research 21, 5651-5655.
40. Webber JL (1990) The informativeness of human (dC-dA)n(dG-dT)n polymorphisms. Genomics 7, 524-530.
41. William M, Dorocicz I, Kasha KJ (1997) Use of microsatellite DNA to distinguish malting and non-malting barley cultivars. Journal of the American Society of Brewing Chemists 55, 107-111.
42. Williams K, Bogacki P, Scott L, Karakousis A, Wallwork H (2001) Mapping of a gene for leaf scald resistance in barley line 'B87/14' and validation of microsatellite and RFLP markers for marker-assisted selection. Plant Breeding 120, 301-304. doi:10. 1046/J.1439-0523.2001.00593.X.
43. Williams KJ, Lichon A, Gianquitto P, Kretschmer JM, Karakousis A, Manning S, Langridge P, Wallwork H (1999) Identification and mapping of a gene conferring resistance to the spot form of net blotch (Pyrenophora teres f maculata) in barley. Theoretical and Applied Genetics 99, 323-327. doi:10.1007/S001220051239.