Cloning and characterization of a heterogeneous nuclear ribonucleoprotein Homolog from Pearl Oyster, Pinctada fucata

Acta Biochimica et Biophysica Sinica

Volumn 39, Issue 12, 2007, Pages 955-963

  Xiong, Xunhao ^a   Feng, Qiaoli ^a   Xie, Liping ^a   Zhang, Rongqing ^a  

^a TSINGHUA UNIVERSITY   (China)

Author keywords

Glycine rich protein; Heterogeneous nuclear ribonucleoprotein; Pinctada fucata; RNA recognition motif

Indexed keywords

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ANTIBODY SPECIFICITY; ARTICLE; CELL NUCLEUS; CHEMISTRY; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PINCTADA; TISSUE DISTRIBUTION;

AMINO ACID SEQUENCE; ANIMALS; CELL NUCLEUS; CLONING, MOLECULAR; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PINCTADA; TISSUE DISTRIBUTION;

MOLLUSCA; PINCTADA; PINCTADA FUCATA;

EID: 37349117376     PISSN: 16729145     EISSN: 17457270     Source Type: Journal    
DOI: 10.1111/j.1745-7270.2007.00341.x     Document Type: Article

References (42)

1. Dreyfuss G, Swanson MS, Pinol-Roma S. Heterogeneous nuclear ribonucle-oprotein particles and the pathway of mRNA formation. Trends Biochem Sci 1988, 13 : 86 91.
2. Birney E, Kumar S, Krainer AR. Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res 1993, 21 : 5803 5816.
3. Dreyfuss G, Matunis MJ, Pinol-Roma S, Burd CG. hnRNP proteins and the biogenesis of mRNA. Annu Rev Biochem 1993, 62 : 289 321.
4. Burd CG, Dreyfuss G. Conserved structures and diversity of functions of RNA-binding proteins. Science 1994, 265 : 615 621.
5. Kiledjian M, Dreyfuss G. Primary structure and binding activity of the hnRNP U protein: Binding RNA through RGG box. EMBO J 1992, 11 : 2655 2664.
6. Kajita Y, Nakayama J, Aizawa M, Ishikawa F. The UUAG-specific RNA binding protein, heterogeneous nuclear ribonucleoprotein D0. Common modular structure and binding properties of the 2xRBD-Gly family. J Biol Chem 1995, 270 : 22167 22175.
7. Siomi H, Matunis MJ, Michael WM, Dreyfuss G. The pre-mRNA binding K protein contains a novel evolutionarily conserved motif. Nucleic Acids Res 1993, 21 : 1193 1198.
8. Dejgaard K, Leffers H. Characterisation of the nucleic-acid-binding activity of KH domains. Different properties of different domains. Eur J Biochem 1996, 241 : 425 431.
9. Matunis EL, Kelley R, Dreyfuss G. Essential role for a heterogeneous nuclear ribonucleoprotein (hnRNP) in oogenesis: hrp40 is absent from the germ line in the dorsoventral mutant squid. Proc Natl Acad Sci USA 1994, 91 : 2781 2784.
10. Kinnaird JH, Maitland K, Walker GA, Wheatley I, Thompson FJ, Devaney E. HRP-2, a heterogeneous nuclear ribonucleoprotein, is essential for em-bryogenesis and oogenesis in Caenorhabditis elegans. Exp Cell Res 2004, 298, 418 430.
11. Steinhauer J, Kalderon D. The RNA-binding protein Squid is required for the establishment of anteroposterior polarity in the Drosophila oocyte. Development 2005, 132 : 5515 5525.
12. Huang J, Chen XH, Wu K, Xu P. Cloning and expression of a novel isoform of heterogeneous nuclear ribonucleoprotein-R. Neuroreport 2005, 16 : 727 730.
13. Blanchette AR, Fuentes Medel YF, Gardner PD. Cell-type-specific and developmental regulation of heterogeneous nuclear ribonucleoprotein K mRNA in the rat nervous system. Gene Expr Patterns 2006, 6 : 596 606.
14. Nizzoli D, Bartoli M, Viaroli P. Nitrogen and phosphorous budgets during a farming cycle of the Manila clam Ruditapes philippinarum: An in situ experiment. Aquaculture 2006, 261 : 98 108.
15. Saavedra C, Bachère E. Bivalve genomics. Aquaculture 2006, 256 : 1 14.
16. Xiong XH, Chen L, Li Y, Xie LP, Zhang RQ. Pf-ALMP, a novel astacin-like metalloproteinase with cysteine arrays, is abundant in hemocytes of pearl oyster Pinctada fucata. BBA-Gene Struct Expr 2006, 1759 : 526 534.
17. 2+-ATPase Isoforms from Pearl Oyster (Pinctada fucata). Acta Biochim Biophys Sin 2007, 39 : 722 730.
18. Wu X, Xiong XH, Xie LP, Zhang RQ. Pf-Rel, a Rel/Nuclear Factor-kB Homolog Identified from the Pearl Oyster, Pinctada fucata. Acta Biochim Biophys Sin 2007, 39 : 533 539.
19. Xiong X, Feng QL, Chen L, Xie LP, Zhang RQ. Cloning and characterization of an IKK homologue from pearl oyster, Pinctada fucata. Dev Comp Immunol 2007, doi:10.1016/j.dci.2007.03.013.
20. Lieb B, Carl M, Hock R, Gebauer D, Scheer U. Identification of a novel mRNA-associated protein in oocytes of Pleurodeles waltl and Xenopus laevis. Exp Cell Res 1998, 245 : 272 281.
21. Stephen JR, Dent KC, Finch-Savage WE. A cDNA encoding a cold-induced glycine-rich RNA binding protein from Prunus avium expressed in embryonic axes. Gene 2003, 320 : 177 183.
22. Tanaka KJ, Kawamura H, Matsugu H, Nishikata T. An ascidian glycine-rich RNA binding protein is not induced by temperature stress but is expressed under a genetic program during embryogenesis. Gene 2000, 243 : 207 214.
23. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25 : 4876 4882.
24. Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd ed. New York : Cold Spring Harbor Laboratory Press.
25. Ghisolfi L, Kharrat A, Joseph G, Amalric F, Erard M. Concerted activities of the RNA recognition and the glycine-rich C-terminal domains of nucleolin are required for efficient complex formation with pre-ribosomal RNA. Eur J Biochem 1992, 209 : 541 548.
26. Hassfeld W, Chan EK, Mathison DA, Portman D, Dreyfuss G, Steiner G., Tan EM. Molecular definition of heterogeneous nuclear ribonucleoprotein R (hnRNP R) using autoimmune antibody: Immunological relationship with hnRNP P. Nucleic Acids Res 1998, 26 : 439 445.
27. Ostrowski J, Schullery DS, Denisenko ON, Higaki Y, Watts J, Aebersold R, Stempka L et al. Role of tyrosine phosphorylation in the regulation of the interaction of heterogeneous nuclear ribonucleoprotein K protein with its protein and RNA partners. J Biol Chem 2000, 275 : 3619 3628.
28. Hresko RC, Mueckler M. Identification of pp68 as the tyrosine- phosphorylated form of SYNCRIP/NSAP1-A cytoplasmic RNA-binding protein. J Biol Chem 2002, 277 : 25233 25238.
29. Musacchio A, Noble M, Pauptit R, Wierenga R, Saraste M. Crystal structure of a Src-homology 3 (SH3) domain. Nature 1992, 359 : 851 855.
30. Yu H, Rosen MK, Shin TB, Seidel-Dugan C, Brugge JS, Schreiber SL. Solution structure of the SH3 domain of Src and identification of its ligand-binding site. Science 1992, 258 : 1665 1668.
31. Adolph D, Flach N, Mueller K, Ostareck DH, Ostareck-Lederer A. Deciphering the cross talk between hnRNP K and c-Src: The c-Src activation domain in hnRNP K is distinct from a second interaction site. Mol Cell Biol 2007, 27 : 1758 177.
32. Dallaire F, Dupuis S, Fiset S, Chabot B. Heterogeneous nuclear ribonucle-oprotein A1 and UP1 protect mammalian telomeric repeats and modulate telomere replication in vitro. J Biol Chem 2000, 275 : 14509 14516.
33. Kim VN, Dreyfuss G. Nuclear mRNA binding proteins couple pre-mRNA splicing and post-splicing events. Mol Cells 2001, 12 : 1 10.
34. Kavanagh SJ, Schulz TC, Davey P, Claudianos C, Russell C, Rathjen PD. A family of RS domain proteins with novel subcellular localization and trafficking. Nucleic Acids Res 2005, 33 : 1309 1322.
35. Green DM, Marfatia KA, Crafton EB, Zhang X, Cheng X, Corbett AH. Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p. J Biol Chem 2002, 277 : 7752 7760.
36. Mowen KA, Tang J, Zhu W, Schurter BT, Shuai K, Herschman HR, David M. Arginine methylation of STAT 1 modulates IFN-α/β-induced transcription. Cell 2000, 104 : 731 741.
37. Denman RB. Methylation of the arginine-glycine-rich region in the fragile X mental retardation protein FMRP differentially affects RNA binding. Cell Mol Biol Lett 2002, 7 : 877 883.
38. Siomi H, Dreyfuss G. RNA-binding proteins as regulators of gene expression. Curr Opin Genet Dev 1997, 7 : 345 353.
39. Costa RM, Mason J, Lee M, Amaya E, Zorn AM. Novel gene expression domains reveal early patterning of the Xenopus endoderm. Gene Expr Patterns 2003, 3 : 509 519.
40. Mayer AN, Fishman MC. Nil per os encodes a conserved RNA recognition motif protein required for morphogenesis and cytodifferentiation of digestive organs in zebrafish. Development 2003, 130 : 3917 3928.
41. Asai R, Okano H, Yasugi S. Correlation between Musashi-1 and c-hairy-1 expression and cell proliferation activity in the developing intestine and stomach of both chicken and mouse. Dev Growth Differ 2005, 47 : 501 510.
42. Lorenzen JA, Bonacci BB, Palmer RE, Wells C, Zhang J, Haber DA, Goldstein AM et al. Rbm19 is a nucleolar protein expressed in crypt/progenitor cells of the intestinal epithelium. Gene Expr Patterns 2005, 6 : 45 56.