-
1
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, et al. (2000). The protein data bank. Nucleic Acids Res. 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
-
2
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly ML (1983). Solvent-accessible surfaces of proteins and nucleic acids. Science 221: 709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
3
-
-
84961981091
-
Implicit solvation models: Equilibria, structure, spectra, and dynamics
-
Cramer CJ and Truhlar DG (1999). Implicit solvation models: equilibria, structure, spectra, and dynamics. Chem. Ver. 99: 2161-2200.
-
(1999)
Chem. Ver
, vol.99
, pp. 2161-2200
-
-
Cramer, C.J.1
Truhlar, D.G.2
-
4
-
-
84986483798
-
The double cubic lattice method: Efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies
-
Eisenhaber F, Lijnzaad P, Argos P, Sander C, et al. (1995). The double cubic lattice method: efficient approaches to numerical integration of surface area and volume and to dot surface contouring of molecular assemblies. J. Comput. Chem. 16: 273-285.
-
(1995)
J. Comput. Chem
, vol.16
, pp. 273-285
-
-
Eisenhaber, F.1
Lijnzaad, P.2
Argos, P.3
Sander, C.4
-
5
-
-
33749046258
-
Building multiple sequence alignments with a flavor of HSSP alignments
-
Higa RH, Cruz SA, Kuser PR, Yamagishi ME, et al. (2006). Building multiple sequence alignments with a flavor of HSSP alignments. Genet. Mol. Res. 5: 127-137.
-
(2006)
Genet. Mol. Res
, vol.5
, pp. 127-137
-
-
Higa, R.H.1
Cruz, S.A.2
Kuser, P.R.3
Yamagishi, M.E.4
-
6
-
-
0000486193
-
Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I: Algorithm and examples
-
Holst M, Baker N and Wang M (2000). Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I: Algorithm and examples. J. Comput. Chem. 21: 1319-1342.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 1319-1342
-
-
Holst, M.1
Baker, N.2
Wang, M.3
-
7
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig B and Nicholls A (1995). Classical electrostatics in biology and chemistry. Science 268: 1144-1149.
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
8
-
-
0042532200
-
STING Millennium: A web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence
-
Neshich G, Togawa RC, Mancini AL, Kuser PR, et al. (2003). STING Millennium: a web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence. Nucleic Acids Res. 31: 3386-3392.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3386-3392
-
-
Neshich, G.1
Togawa, R.C.2
Mancini, A.L.3
Kuser, P.R.4
-
9
-
-
3242878795
-
JavaProtein Dossier: A novel web-based data visualization tool for comprehensive analysis of protein structure
-
Neshich G, Rocchia W, Mancini AL, Yamagishi ME, et al. (2004). JavaProtein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure. Nucleic Acids Res. 32: W595-W601.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Neshich, G.1
Rocchia, W.2
Mancini, A.L.3
Yamagishi, M.E.4
-
11
-
-
13444250000
-
STING Report: Convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database
-
Neshich G, Mancini AL, Yamagishi ME, Kuser PR, et al. (2005b). STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database. Nucleic Acids Res. 33: D269-D274.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Neshich, G.1
Mancini, A.L.2
Yamagishi, M.E.3
Kuser, P.R.4
-
12
-
-
33845421969
-
The Star STING server: A multiplatform environment for protein structure analysis
-
Neshich G, Mazoni I, Oliveira SR, Yamagishi ME, et al. (2006). The Star STING server: a multiplatform environment for protein structure analysis. Genet. Mol. Res. 5: 717-722.
-
(2006)
Genet. Mol. Res
, vol.5
, pp. 717-722
-
-
Neshich, G.1
Mazoni, I.2
Oliveira, S.R.3
Yamagishi, M.E.4
-
13
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp KA and Honig B (1991). Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11: 281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
14
-
-
0030828982
-
Electrostatic influence on the kinetics of ligand binding to acetylcholinesterase. Distinctions between active center ligands and fasciculin
-
Radic Z, Kirchhoff PD, Quinn DM, McCammon JA, et al. (1997). Electrostatic influence on the kinetics of ligand binding to acetylcholinesterase. Distinctions between active center ligands and fasciculin. J. Biol. Chem. 272: 23265-23277.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 23265-23277
-
-
Radic, Z.1
Kirchhoff, P.D.2
Quinn, D.M.3
McCammon, J.A.4
-
15
-
-
0017429069
-
Areas, volumes, packing and protein structure
-
Richards FM (1977). Areas, volumes, packing and protein structure. Annu. Rev. Biophys. Bioeng. 6: 151-176.
-
(1977)
Annu. Rev. Biophys. Bioeng
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
16
-
-
26844507399
-
Poisson-Boltzmann equation boundary conditions for biological applications
-
Rocchia W (2005). Poisson-Boltzmann equation boundary conditions for biological applications. Math. Comput. Model. 41: 1109-1118.
-
(2005)
Math. Comput. Model
, vol.41
, pp. 1109-1118
-
-
Rocchia, W.1
-
17
-
-
0035913537
-
Extending the applicability of the nonlinear Poisson-Boltzmann equation: Multiple dielectric constants and multivalent ions
-
Rocchia W, Alexov E and Honig B (2001). Extending the applicability of the nonlinear Poisson-Boltzmann equation: multiple dielectric constants and multivalent ions. J. Phys. Chem. B. 105: 6507-6514.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6507-6514
-
-
Rocchia, W.1
Alexov, E.2
Honig, B.3
-
18
-
-
0037080244
-
Rapid grid-based construction of the molecular surface for both molecules and geometric objects: Applications to the finite difference Poisson-Boltzmann method
-
Rocchia W, Sridharan S, Nicholls A, Alexov E, et al. (2002). Rapid grid-based construction of the molecular surface for both molecules and geometric objects: applications to the finite difference Poisson-Boltzmann method. J. Comput. Chem. 23: 128-137.
-
(2002)
J. Comput. Chem
, vol.23
, pp. 128-137
-
-
Rocchia, W.1
Sridharan, S.2
Nicholls, A.3
Alexov, E.4
-
20
-
-
0036923836
-
Differences in electrostatic properties at antibody-antigen binding sites: Implications for specificity and cross-reactivity
-
Sinha N, Mohan S, Lipschultz CA and Smith-Gill SJ (2002). Differences in electrostatic properties at antibody-antigen binding sites: implications for specificity and cross-reactivity. Biophys. J. 83: 2946-2968.
-
(2002)
Biophys. J
, vol.83
, pp. 2946-2968
-
-
Sinha, N.1
Mohan, S.2
Lipschultz, C.A.3
Smith-Gill, S.J.4
-
21
-
-
0033614004
-
Word JM, Lovell SC, Richardson JS and Richardson DC (1999). Asparagine and glutamine: Using hydrogen atom contacts in the choice of side-chain amide orientation
-
Word JM, Lovell SC, Richardson JS and Richardson DC (1999). Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. J. Mol. Biol. 285: 1735-1747.
-
(1735)
J. Mol. Biol
, vol.285
-
-
|