-
1
-
-
0029026682
-
Electrostatic and hydrodynamic orientational steering effects in enzyme-substrate association
-
Antosiewicz, J., and J. A. McCammon. 1995. Electrostatic and hydrodynamic orientational steering effects in enzyme-substrate association. Biophys. J. 69:57-65.
-
(1995)
Biophys. J.
, vol.69
, pp. 57-65
-
-
Antosiewicz, J.1
McCammon, J.A.2
-
3
-
-
0028676261
-
Structural conservation of hypervariable regions in immunoglobulins evolution
-
Barre, S., A. S. Greenberg, M. F. Flajnik, and C. Chothia. 1994. Structural conservation of hypervariable regions in immunoglobulins evolution. Nat. Struct. Biol. 1:915-920.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 915-920
-
-
Barre, S.1
Greenberg, A.S.2
Flajnik, M.F.3
Chothia, C.4
-
4
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein, F. C., T. F. Koetzle, G. H. Williams, E. E. Meyer, Jr., M. D. Brice, J. R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi. 1977. The Protein Data Bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.H.3
Meyer E.E., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
5
-
-
0028014642
-
Bound water molecules and conformational stabilization help mediate an antigen-antibody association
-
Bhat, T. N., G. A. Bentley, G. Boulot, M. I. Greene, D. Tello, W. Dall'Acqua, H. Souchon, F. P. Schwarz, R. A. Mariuzza, and R. J. Poljak. 1994. Bound water molecules and conformational stabilization help mediate an antigen-antibody association. Proc. Natl. Acad. Sci. U.S.A. 91:1089-1093.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 1089-1093
-
-
Bhat, T.N.1
Bentley, G.A.2
Boulot, G.3
Greene, M.I.4
Tello, D.5
Dall'Acqua, W.6
Souchon, H.7
Schwarz, F.P.8
Mariuzza, R.A.9
Poljak, R.J.10
-
6
-
-
0028877602
-
Structural features of the reactions between antibodies and protein antigens
-
Braden, B. C., and R. J. Poljak. 1995. Structural features of the reactions between antibodies and protein antigens. FASEB J. 9:9-16.
-
(1995)
FASEB J.
, vol.9
, pp. 9-16
-
-
Braden, B.C.1
Poljak, R.J.2
-
7
-
-
0000682989
-
Finite difference Poisson-Boltzman electrostatic calculations: Increased accuracy achieved by harmonic dielectric smoothing and charge antialiasing
-
Bruccoleri, R. E., J. Novotny, and M. E. Davis. 1997. Finite difference Poisson-Boltzman electrostatic calculations: Increased accuracy achieved by harmonic dielectric smoothing and charge antialiasing. J. Comput. Chem. 18:268-276.
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 268-276
-
-
Bruccoleri, R.E.1
Novotny, J.2
Davis, M.E.3
-
8
-
-
0031891022
-
Computation of electrostatic complements to proteins: A case of charge stabilized binding
-
Chong, L. T., S. E. Dempster, Z. S. Hendsch, L. P. Lee, and B. Tidor. 1998. Computation of electrostatic complements to proteins: A case of charge stabilized binding. Protein Sci. 7:206-210.
-
(1998)
Protein Sci.
, vol.7
, pp. 206-210
-
-
Chong, L.T.1
Dempster, S.E.2
Hendsch, Z.S.3
Lee, L.P.4
Tidor, B.5
-
9
-
-
0033405041
-
Molecular dynamics and free energy calculations applied to affinity maturation in antibody 48G7
-
Chong, L. T., Y. Duan, L. Wang, I. Massova, and P. A. Kollman. 1999. Molecular dynamics and free energy calculations applied to affinity maturation in antibody 48G7. Proc. Natl. Acad. Sci. U.S.A. 96:14330-14335.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 14330-14335
-
-
Chong, L.T.1
Duan, Y.2
Wang, L.3
Massova, I.4
Kollman, P.A.5
-
10
-
-
0016352763
-
Hydrophobic bonding and accessible surface area in proteins
-
Chothia, C. 1974. Hydrophobic bonding and accessible surface area in proteins. Nature. 248:338-339.
-
(1974)
Nature
, vol.248
, pp. 338-339
-
-
Chothia, C.1
-
11
-
-
0032474463
-
A mutational analysis of binding interactions in an antigen-antibody protein-protein complex
-
Dall'Acqua, W., E. R. Goldman, W. Lin, C. Teng, D. Tsuchiya, H. Li, X. Ysern, B. C. Braden, Y. Li, S. J. Smith-Gill, and R. A. Mariuzza. 1998. A mutational analysis of binding interactions in an antigen-antibody protein-protein complex. Biochemistry. 37:7981-7991.
-
(1998)
Biochemistry
, vol.37
, pp. 7981-7991
-
-
Dall'Acqua, W.1
Goldman, E.R.2
Lin, W.3
Teng, C.4
Tsuchiya, D.5
Li, H.6
Ysern, X.7
Braden, B.C.8
Li, Y.9
Smith-Gill, S.J.10
Mariuzza, R.A.11
-
12
-
-
0031567901
-
Structural and affinity studies of IgM polyreactive natural auto-antibodies
-
Diaw, L., C. Magnac, O. Pritsch, M. Buckle, P. M. Alzari, and G. Dighiero. 1997. Structural and affinity studies of IgM polyreactive natural auto-antibodies. J. Immunol. 158:968-976.
-
(1997)
J. Immunol.
, vol.158
, pp. 968-976
-
-
Diaw, L.1
Magnac, C.2
Pritsch, O.3
Buckle, M.4
Alzari, P.M.5
Dighiero, G.6
-
13
-
-
0029902365
-
Determinants of polyreactivity in a large panel of recombinant human antibodies from HIV-1 infection
-
Ditzel, H. J., K. Itoh, and D. R. Burton. 1996. Determinants of polyreactivity in a large panel of recombinant human antibodies from HIV-1 infection. J. Immunol. 157:739-749.
-
(1996)
J. Immunol.
, vol.157
, pp. 739-749
-
-
Ditzel, H.J.1
Itoh, K.2
Burton, D.R.3
-
14
-
-
0029379551
-
Let's get specific: The relationship between specificity and affinity
-
Eaton, B. E., L. Gold, and D. A. Zichi. 1995. Let's get specific: The relationship between specificity and affinity. Chemistry and Biology. 2:633-638.
-
(1995)
Chemistry and Biology
, vol.2
, pp. 633-638
-
-
Eaton, B.E.1
Gold, L.2
Zichi, D.A.3
-
15
-
-
0029856410
-
Hydrogen-bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme
-
Fields, B. A., F. A. Goldbaum, W. Dall'Acqua, E. L. Malchiodi, A. Cauerhff, F. P. Schwarz, X. Ysern, R. J. Poljak, and R. A. Mariuzza. 1996. Hydrogen-bonding and solvent structure in an antigen-antibody interface. Crystal structures and thermodynamic characterization of three Fv mutants complexed with lysozyme. Biochemistry. 35:15494-15503.
-
(1996)
Biochemistry
, vol.35
, pp. 15494-15503
-
-
Fields, B.A.1
Goldbaum, F.A.2
Dall'Acqua, W.3
Malchiodi, E.L.4
Cauerhff, A.5
Schwarz, F.P.6
Ysern, X.7
Poljak, R.J.8
Mariuzza, R.A.9
-
16
-
-
0027943261
-
Conformational isomerism and the diversity of antibodies
-
Foote, J., and C. Milstein. 1994. Conformational isomerism and the diversity of antibodies. Proc. Natl. Acad. Sci. U.S.A. 91:10370-10374.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 10370-10374
-
-
Foote, J.1
Milstein, C.2
-
17
-
-
0033621118
-
The propagation of binding interactions to remote sites in proteins: Analysis of the binding of the monoclonal antibody D1.3 to lysozyme
-
Freire, E. 1999. The propagation of binding interactions to remote sites in proteins: Analysis of the binding of the monoclonal antibody D1.3 to lysozyme. Proc. Natl. Acad. Sci. U.S.A. 96:10118-10122.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 10118-10122
-
-
Freire, E.1
-
18
-
-
0035830963
-
Protein-protein association: Investigation of factors influencing association rates by Brownian dynamics simulations
-
Gabdoulline, R. R., and R. C. Wade. 2001. Protein-protein association: Investigation of factors influencing association rates by Brownian dynamics simulations. J. Mol. Biol. 306:1139-1155.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 1139-1155
-
-
Gabdoulline, R.R.1
Wade, R.C.2
-
19
-
-
0023280069
-
Calculation of electrostatic potential in an enzyme active site
-
Gilson, M. K., and B. H. Honig. 1987. Calculation of electrostatic potential in an enzyme active site. Nature. 330:84-86.
-
(1987)
Nature
, vol.330
, pp. 84-86
-
-
Gilson, M.K.1
Honig, B.H.2
-
20
-
-
0021813940
-
On the calculation of electrostatic interactions in proteins
-
Gilson, M. K., A. Rashin, R. Fine, and B. Honig. 1985. On the calculation of electrostatic interactions in proteins. J. Mol. Biol. 183:503-516.
-
(1985)
J. Mol. Biol.
, vol.183
, pp. 503-516
-
-
Gilson, M.K.1
Rashin, A.2
Fine, R.3
Honig, B.4
-
21
-
-
0016157533
-
Kinetic mapping of the antibody combining site by chemical relaxation spectrometry
-
Haselkorn, D., S. Friedman, D. Givol, and I. Pecht. 1974. Kinetic mapping of the antibody combining site by chemical relaxation spectrometry. Biochemistry. 13:2210-2222.
-
(1974)
Biochemistry
, vol.13
, pp. 2210-2222
-
-
Haselkorn, D.1
Friedman, S.2
Givol, D.3
Pecht, I.4
-
22
-
-
0028204490
-
Do salt-bridges stabilize proteins? A continuum electrostatic analysis
-
Hendsch, Z. S., and B. Tidor. 1994. Do salt-bridges stabilize proteins? A continuum electrostatic analysis. Protein Sci. 3:211-226.
-
(1994)
Protein Sci.
, vol.3
, pp. 211-226
-
-
Hendsch, Z.S.1
Tidor, B.2
-
23
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig, B., and A. Nicholls. 1995. Classical electrostatics in biology and chemistry. Science. 268:1144-1149.
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
24
-
-
0032981632
-
Comparison of protein-protein interactions in serine protease-inhibitor and antibody-antigen complexes: Implications for the protein docking problem
-
Jackson, R. M. 1999. Comparison of protein-protein interactions in serine protease-inhibitor and antibody-antigen complexes: Implications for the protein docking problem. Protein Sci. 8:603-613.
-
(1999)
Protein Sci.
, vol.8
, pp. 603-613
-
-
Jackson, R.M.1
-
25
-
-
0031010107
-
The kinetics of protein-protein recognition
-
Janin, J. 1997. The kinetics of protein-protein recognition. Proteins Struc. Func. Genet. 28:153-161.
-
(1997)
Proteins Struc. Func. Genet.
, vol.28
, pp. 153-161
-
-
Janin, J.1
-
26
-
-
0017747498
-
Unusual distributions of amino acids in complementarity-determining (hyper-variable) segments of heavy and light chains of immunoglobulins and their possible roles in specificity of antibody-combining sites
-
Kabat, E. A., T. T. Wu, and H. Bilofsky. 1977. Unusual distributions of amino acids in complementarity-determining (hyper-variable) segments of heavy and light chains of immunoglobulins and their possible roles in specificity of antibody-combining sites. J. Biol. Chem. 252:6609-6616.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 6609-6616
-
-
Kabat, E.A.1
Wu, T.T.2
Bilofsky, H.3
-
27
-
-
0034824313
-
Electrostatic complementarity at ligand binding sites: Application to chorismate mutase
-
Kangas, E., and B. Tidor. 2001. Electrostatic complementarity at ligand binding sites: Application to chorismate mutase. J. Phys. Chem. B. 105:880-888.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 880-888
-
-
Kangas, E.1
Tidor, B.2
-
28
-
-
0030871363
-
Enzyme flexibility: A new concept in recognition of hydrophobic substrates
-
Kawaguchi, S., Y. Nobe, J. Yasuoka, T. Wakamiya, S. Kusumoto, and S. Kuramitsu. 1997. Enzyme flexibility: A new concept in recognition of hydrophobic substrates. J. Biochem. (Tokyo). 122:55-63.
-
(1997)
J. Biochem. (Tokyo)
, vol.122
, pp. 55-63
-
-
Kawaguchi, S.1
Nobe, Y.2
Yasuoka, J.3
Wakamiya, T.4
Kusumoto, S.5
Kuramitsu, S.6
-
29
-
-
0022964504
-
Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: Effects ionic strength and amino acid modification
-
Klapper, I., R. Hagstrom, R. Fine, K. Sharp, and B. Honig. 1986. Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: Effects ionic strength and amino acid modification. Proteins Struc. Funct. Genet. 1:47-59.
-
(1986)
Proteins Struc. Funct. Genet.
, vol.1
, pp. 47-59
-
-
Klapper, I.1
Hagstrom, R.2
Fine, R.3
Sharp, K.4
Honig, B.5
-
30
-
-
0017190970
-
Mechanism of discrimination between cognate and non-cognate tRNAs by phenylalanyl-tRNA synthetase from yeast
-
Krauss, G., D. Riesner, and G. Maass. 1976. Mechanism of discrimination between cognate and non-cognate tRNAs by phenylalanyl-tRNA synthetase from yeast. Eur. J. Biochem. 68:81-93.
-
(1976)
Eur. J. Biochem.
, vol.68
, pp. 81-93
-
-
Krauss, G.1
Riesner, D.2
Maass, G.3
-
31
-
-
0033994586
-
Electrostatic strengths of salt-bridges in thermophilic and mesophilic glutamate dehydrogenase monomers
-
Kumar, S., B. Ma, C. J. Tsai, and R. Nussinov. 2000. Electrostatic strengths of salt-bridges in thermophilic and mesophilic glutamate dehydrogenase monomers. Proteins Struc. Fuct. Genet. 38:368-383.
-
(2000)
Proteins Struc. Fuct. Genet.
, vol.38
, pp. 368-383
-
-
Kumar, S.1
Ma, B.2
Tsai, C.J.3
Nussinov, R.4
-
32
-
-
0033550299
-
Salt-bridge stability in monomeric proteins
-
Kumar, S., and R. Nussinov. 1999. Salt-bridge stability in monomeric proteins. J. Mol. Biol. 293:1241-1255.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 1241-1255
-
-
Kumar, S.1
Nussinov, R.2
-
33
-
-
0033600742
-
Crystal structure of anti-hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces
-
Kondoi, H., M. Shiroishi, M. Matsushima, K. Tsumoto, and I. Kumagai. 1999. Crystal structure of anti-hen egg white lysozyme antibody (HyHEL-10) Fv-antigen complex. Local structural changes in the protein antigen and water-mediated interactions of Fv-antigen and light chain-heavy chain interfaces. J. Biol. Chem. 274:27623-27631.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 27623-27631
-
-
Kondoi, H.1
Shiroishi, M.2
Matsushima, M.3
Tsumoto, K.4
Kumagai, I.5
-
34
-
-
0028919738
-
Computer modeling of electrostatic steering and orientational effects in antibody-antigen association
-
Kozack, R. E., M. J. d'Mello, and S. Subramaniam. 1995. Computer modeling of electrostatic steering and orientational effects in antibody-antigen association. Biophys. J. 68:807-814.
-
(1995)
Biophys. J.
, vol.68
, pp. 807-814
-
-
Kozack, R.E.1
D'Mello, M.J.2
Subramaniam, S.3
-
35
-
-
0026575333
-
Experimental analysis by site-directed mutagenesis of somatic mutation effects on affinity and fine specificity in antibodies specific for lysozyme
-
Lavoie, T. B., W. N. Drohan, and S. J. Smith-Gill. 1992. Experimental analysis by site-directed mutagenesis of somatic mutation effects on affinity and fine specificity in antibodies specific for lysozyme. J. Immunol. 148:503-513.
-
(1992)
J. Immunol.
, vol.148
, pp. 503-513
-
-
Lavoie, T.B.1
Drohan, W.N.2
Smith-Gill, S.J.3
-
36
-
-
0033368120
-
Structural differences among monoclonal antibodies with distinct fine specificities and kinetic properties
-
Lavoie, T. B., S. Mohan, C. A. Lipschultz, J.-C. Grivel, Y. Li, C. R. Mainhart, L. N. W. Kam-Morgan, W. N. Drohan, S. J. Smith-Gill. 1999. Structural differences among monoclonal antibodies with distinct fine specificities and kinetic properties. Mol. Immonol. 36:1189-1205.
-
(1999)
Mol. Immonol.
, vol.36
, pp. 1189-1205
-
-
Lavoie, T.B.1
Mohan, S.2
Lipschultz, C.A.3
Grivel, J.-C.4
Li, Y.5
Mainhart, C.R.6
Kam-Morgan, L.N.W.7
Drohan, W.N.8
Smith-Gill, S.J.9
-
37
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee, B., and F. M. Richards. 1971. The interpretation of protein structures: Estimation of static accessibility. J. Mol. Biol. 55:379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
38
-
-
0026019108
-
Prediction of protein side-chain conformation by packing optimization
-
Lee, C., and S. Subbiah. 1991. Prediction of protein side-chain conformation by packing optimization. J. Mol. Biol. 217:373-388.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 373-388
-
-
Lee, C.1
Subbiah, S.2
-
39
-
-
0035107570
-
Optimization of binding electrostatics: Charge complementarity in the barnase-barstar protein complex
-
Lee, L. P., and B. Tidor. 2001. Optimization of binding electrostatics: Charge complementarity in the barnase-barstar protein complex. Protein Sci. 10:362-377.
-
(2001)
Protein Sci.
, vol.10
, pp. 362-377
-
-
Lee, L.P.1
Tidor, B.2
-
40
-
-
0026754015
-
Accurate modeling of protein conformation by automatic segment matching
-
Levitt, M. 1992. Accurate modeling of protein conformation by automatic segment matching. J. Mol. Biol. 226:507-533.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 507-533
-
-
Levitt, M.1
-
41
-
-
0034732988
-
Three-dimensional structures of the free and antigen-bound Fab from monoclonal antilysozyme antibody HyHEL-63
-
Li, Y., H. Li, S. J. Smith-Gill, and R. A. Mariuzza. 2000. Three-dimensional structures of the free and antigen-bound Fab from monoclonal antilysozyme antibody HyHEL-63. Biochemistry. 39:6296-6309.
-
(2000)
Biochemistry
, vol.39
, pp. 6296-6309
-
-
Li, Y.1
Li, H.2
Smith-Gill, S.J.3
Mariuzza, R.A.4
-
42
-
-
0035916256
-
Mutations of an epitope hot-spot residue alter rate limiting steps of antigen-antibody protein-protein associations
-
Li, Y., C. A. Lipschultz, S. Mohan, and S. J. Smith-Gill. 2001. Mutations of an epitope hot-spot residue alter rate limiting steps of antigen-antibody protein-protein associations. Biochemistry. 40:2011-2022.
-
(2001)
Biochemistry
, vol.40
, pp. 2011-2022
-
-
Li, Y.1
Lipschultz, C.A.2
Mohan, S.3
Smith-Gill, S.J.4
-
43
-
-
0033534360
-
Conformational changes affect binding and catalysis by ester-hydrolysing antibodies
-
Lindner, A. B., Z. Eshhar, and D. S. Tawfik. 1999. Conformational changes affect binding and catalysis by ester-hydrolysing antibodies. J. Mol. Biol. 285:421-430.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 421-430
-
-
Lindner, A.B.1
Eshhar, Z.2
Tawfik, D.S.3
-
44
-
-
0034426852
-
Experimental design for analysis of complex kinetics using surface plasmon resonance
-
Lipschultz, C. A., Y. Li, and S. Smith-Gill. 2000. Experimental design for analysis of complex kinetics using surface plasmon resonance. Methods. 20:310-318.
-
(2000)
Methods
, vol.20
, pp. 310-318
-
-
Lipschultz, C.A.1
Li, Y.2
Smith-Gill, S.3
-
45
-
-
0030917740
-
Exceptionally stable salt-bridges in cytochrome P450cam have functional roles
-
Lounnas, V., and R. C. Wade. 1997. Exceptionally stable salt-bridges in cytochrome P450cam have functional roles. Biochemistry. 36:5402-5417.
-
(1997)
Biochemistry
, vol.36
, pp. 5402-5417
-
-
Lounnas, V.1
Wade, R.C.2
-
46
-
-
0028574137
-
Contribution of a hydrogen-bond/salt-bridge network to the stability of secondary and tertiary structures in lambda repressor
-
Marqusee, S., and R. T. Sauer. 1994. Contribution of a hydrogen-bond/salt-bridge network to the stability of secondary and tertiary structures in lambda repressor. Protein Sci. 3:2217-2225.
-
(1994)
Protein Sci.
, vol.3
, pp. 2217-2225
-
-
Marqusee, S.1
Sauer, R.T.2
-
47
-
-
0025964038
-
Structure, function and properties of antibody binding sites
-
Review
-
Mian, I. S., A. R. Bradwell. and A. J. Olson. 1991. Structure, function and properties of antibody binding sites. J. Mol. Biol. 217:133-151. Review.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 133-151
-
-
Mian, I.S.1
Bradwell, A.R.2
Olson, A.J.3
-
48
-
-
0029588555
-
Complex salt-bridges in proteins: Statistical analysis of structure and function
-
Musafia, B., V. Buchner, and D. Arad. 1995. Complex salt-bridges in proteins: Statistical analysis of structure and function. J. Mol. Biol. 254:761-770.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 761-770
-
-
Musafia, B.1
Buchner, V.2
Arad, D.3
-
49
-
-
0023841049
-
Evidence for multiple conformational changes in the active center of thrombin induced by complex formation with thrombomodulin: An analysis employing nitroxide spin-labels
-
Musci, G., L. J. Berliner, and C. T. Esmon. 1988. Evidence for multiple conformational changes in the active center of thrombin induced by complex formation with thrombomodulin: An analysis employing nitroxide spin-labels. Biochemistry. 27:769-773.
-
(1988)
Biochemistry
, vol.27
, pp. 769-773
-
-
Musci, G.1
Berliner, L.J.2
Esmon, C.T.3
-
50
-
-
0026442095
-
Patterns of antibody specificity during the BALB/c immune response to hen eggwhite lysozyme
-
Newman, M. A., C. R. Mainhart, C. P. Mallett, T. B. Lavoie, and S. J. Smith-Gill. 1992. Patterns of antibody specificity during the BALB/c immune response to hen eggwhite lysozyme. J. Immunol. 149:3260-3272.
-
(1992)
J. Immunol.
, vol.149
, pp. 3260-3272
-
-
Newman, M.A.1
Mainhart, C.R.2
Mallett, C.P.3
Lavoie, T.B.4
Smith-Gill, S.J.5
-
51
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., K. A. Sharp, and B. Honig. 1991. Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins Struc. Funct. Genet. 11:281-296.
-
(1991)
Proteins Struc. Funct. Genet.
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
52
-
-
0028921302
-
Flexibility and function in HIV-1 protease
-
Nicholson, L. K., T. Yamazaki, D. A. Torchia, S. Grzesiek, A. Bax, S. J. Stahl, J. D. Kaufman, P. T. Wingfield, P. Y. Lam, P. K. Jadhav et al. 1995. Flexibility and function in HIV-1 protease. Nat. Struct. Biol. 2:274-280.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 274-280
-
-
Nicholson, L.K.1
Yamazaki, T.2
Torchia, D.A.3
Grzesiek, S.4
Bax, A.5
Stahl, S.J.6
Kaufman, J.D.7
Wingfield, P.T.8
Lam, P.Y.9
Jadhav, P.K.10
-
53
-
-
0024362070
-
On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL5
-
Novotny, J., R. E. Bruccoleri, and F. A. Saul. 1989. On the attribution of binding energy in antigen-antibody complexes McPC 603, D1.3, and HyHEL5. Biochemistry. 28:4735-4749.
-
(1989)
Biochemistry
, vol.28
, pp. 4735-4749
-
-
Novotny, J.1
Bruccoleri, R.E.2
Saul, F.A.3
-
54
-
-
0026438116
-
Electrostatic fields in antibodies and antibody/antigen complexes
-
Novotny, J., and K. Sharp. 1992. Electrostatic fields in antibodies and antibody/antigen complexes. Prog. Biophys. Mol. Biol. 58:203-224.
-
(1992)
Prog. Biophys. Mol. Biol.
, vol.58
, pp. 203-224
-
-
Novotny, J.1
Sharp, K.2
-
55
-
-
0343055582
-
Structure of an antibody-antigen complex: Crystal structure of the HyHEL-10 Fab-lysozyme complex
-
Padlan, E. A., E. W. Silverton, S. Sheriff, G. H. Cohen, S. J. Smith-Gill, and D. R. Davies. 1989. Structure of an antibody-antigen complex: Crystal structure of the HyHEL-10 Fab-lysozyme complex. Proc. Natl. Acad. Sci. U.S.A. 86:5938-5942.
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 5938-5942
-
-
Padlan, E.A.1
Silverton, E.W.2
Sheriff, S.3
Cohen, G.H.4
Smith-Gill, S.J.5
Davies, D.R.6
-
56
-
-
0029991227
-
The immunological evolution of catalysis
-
Patten, P. A., N. S. Gray, P. L. Yang, C. B. Marks, G. J. Wedemayer, J. J. Boniface, R. C. Stevens, and P. G. Schultz. 1996. The immunological evolution of catalysis. Science. 271:1086-1091.
-
(1996)
Science
, vol.271
, pp. 1086-1091
-
-
Patten, P.A.1
Gray, N.S.2
Yang, P.L.3
Marks, C.B.4
Wedemayer, G.J.5
Boniface, J.J.6
Stevens, R.C.7
Schultz, P.G.8
-
57
-
-
0014958182
-
Stereochemistry of cooperative effects in haemoglobin
-
Perutz, M. F. 1970. Stereochemistry of cooperative effects in haemoglobin. Nature. 228:726-739.
-
(1970)
Nature
, vol.228
, pp. 726-739
-
-
Perutz, M.F.1
-
58
-
-
0032958585
-
Energetic analysis of an antigen/antibody interface: Alanine scanning mutagenesis and double mutant cycles on the HyHEL-10/lysozyme interaction
-
Pons, J., A. Rajpal, and J. F. Kirsch. 1999. Energetic analysis of an antigen/antibody interface: Alanine scanning mutagenesis and double mutant cycles on the HyHEL-10/lysozyme interaction. Protein Sci. 8:958-968.
-
(1999)
Protein Sci.
, vol.8
, pp. 958-968
-
-
Pons, J.1
Rajpal, A.2
Kirsch, J.F.3
-
59
-
-
0022412192
-
Hydrophobicity of amino acid residues in globular proteins
-
Rose, G. D., A. R. Geselowitz, G. J. Lesser, R. H. Lee, and M. H. Zehfus. 1985. Hydrophobicity of amino acid residues in globular proteins. Science. 229:834-838.
-
(1985)
Science
, vol.229
, pp. 834-838
-
-
Rose, G.D.1
Geselowitz, A.R.2
Lesser, G.J.3
Lee, R.H.4
Zehfus, M.H.5
-
60
-
-
0019889063
-
Thermodynamics of protein association reactions: Forces contributing to stability
-
Ross, P. D., and S. Subramanian. 1981. Thermodynamics of protein association reactions: Forces contributing to stability. Biochemistry. 20:3096-3102.
-
(1981)
Biochemistry
, vol.20
, pp. 3096-3102
-
-
Ross, P.D.1
Subramanian, S.2
-
61
-
-
0029873697
-
Rapid, electrostatically assisted association of proteins
-
Schreiber, G., and A. R. Fersht. 1996. Rapid, electrostatically assisted association of proteins. Nat. Struct. Biol. 3:427-431.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 427-431
-
-
Schreiber, G.1
Fersht, A.R.2
-
62
-
-
0035889692
-
New insights into the mechanism of protein-protein association
-
Selzer, T., and G. Schreiber. 2001. New insights into the mechanism of protein-protein association. Proteins Struc. Funct. Genet. 45:190-198.
-
(2001)
Proteins Struc. Funct. Genet.
, vol.45
, pp. 190-198
-
-
Selzer, T.1
Schreiber, G.2
-
63
-
-
0032189032
-
Calculation of HyHEL10-lysozyme binding free energy changes: Effect of ten point mutations
-
Sharp, K. A. 1998. Calculation of HyHEL10-lysozyme binding free energy changes: Effect of ten point mutations. Proteins Struc. Func. Genet. 33:39-48.
-
(1998)
Proteins Struc. Func. Genet.
, vol.33
, pp. 39-48
-
-
Sharp, K.A.1
-
64
-
-
0034039797
-
Electrostatic aspects of protein-protein interactions
-
Review
-
Sheinerman, F. B., R. Norel, and B. Honig. 2000. Electrostatic aspects of protein-protein interactions. Curr. Opin. Struct. Biol. 10:153-159. Review.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 153-159
-
-
Sheinerman, F.B.1
Norel, R.2
Honig, B.3
-
65
-
-
0030274312
-
Comparison of CHI domains in different classes of murine antibodies
-
Sheriff, S., P. D. Jeffrey, and J. Bajorath. 1996. Comparison of CHI domains in different classes of murine antibodies. J. Mol. Biol. 263:385-389.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 385-389
-
-
Sheriff, S.1
Jeffrey, P.D.2
Bajorath, J.3
-
66
-
-
0025110479
-
Point charge distributions and electrostatic steering in enzyme/substrate encounter: Brownian dynamics of modified copper/zinc superoxide dismutases
-
Sines, J. J., S. A. Allison, and J. A. McCammon. 1990. Point charge distributions and electrostatic steering in enzyme/substrate encounter: Brownian dynamics of modified copper/zinc superoxide dismutases. Biochemistry. 29:9403-9412.
-
(1990)
Biochemistry
, vol.29
, pp. 9403-9412
-
-
Sines, J.J.1
Allison, S.A.2
McCammon, J.A.3
-
67
-
-
0035659482
-
Inter-domain interactions in hinge-bending transitions
-
Sinha, N., S. Kumar, and R. Nussinov. 2001a. Inter-domain interactions in hinge-bending transitions. Struct. Fold. Design. 9:1165-1181.
-
(2001)
Struct. Fold. Design
, vol.9
, pp. 1165-1181
-
-
Sinha, N.1
Kumar, S.2
Nussinov, R.3
-
68
-
-
0035853126
-
Point mutations and sequence variability in proteins: Redistributions of preexisting populations
-
Sinha, N., and R. Nussinov. 2001. Point mutations and sequence variability in proteins: Redistributions of preexisting populations. Proc. Natl. Acad. Sci. U.S.A. 98:3139-3144.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 3139-3144
-
-
Sinha, N.1
Nussinov, R.2
-
69
-
-
0035037143
-
A proposed structural model for amyloid fibril elongation: Domain swapping forms an interdigitating-structure polymer
-
Sinha, N., C. J. Tsai, and R. Nussinov. 2001b. A proposed structural model for amyloid fibril elongation: Domain swapping forms an interdigitating-structure polymer. Protein Eng. 14:93-103.
-
(2001)
Protein Eng.
, vol.14
, pp. 93-103
-
-
Sinha, N.1
Tsai, C.J.2
Nussinov, R.3
-
70
-
-
32844457567
-
Accurate calculation of hydration free energies using macroscopic solvent models
-
Sitkoff, D., K. A. Sharp, and B. Honig. 1994. Accurate calculation of hydration free energies using macroscopic solvent models. J. Phys. Chem. 98:1978-1988.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
71
-
-
0026209439
-
Protein-protein interactions: Structural motifs and molecular recognition
-
Smith-Gill, S. J. 1991. Protein-protein interactions: Structural motifs and molecular recognition. Curr. Opin. Biotech. 2:568-575.
-
(1991)
Curr. Opin. Biotech.
, vol.2
, pp. 568-575
-
-
Smith-Gill, S.J.1
-
72
-
-
0023240671
-
A three-dimensional model of an anti-lysozyme antibody
-
Smith-Gill, S. J., C. Mainhart, T. B. Lavoie, R. J. Feldmann, W. Drohan, and B. R. Brooks. 1987. A three-dimensional model of an anti-lysozyme antibody. J. Mol. Biol. 194:713-724.
-
(1987)
J. Mol. Biol.
, vol.194
, pp. 713-724
-
-
Smith-Gill, S.J.1
Mainhart, C.2
Lavoie, T.B.3
Feldmann, R.J.4
Drohan, W.5
Brooks, B.R.6
-
73
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar, R. S., and M. T. Record. 1994. Coupling of local folding to site-specific binding of proteins to DNA. Science. 263:777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record, M.T.2
-
74
-
-
0029975103
-
Dynamics of the GroEL-protein complex: Effects of nucleotides and folding mutants
-
Sparrer, H., H. Lilie, and J. Buchner. 1996. Dynamics of the GroEL-protein complex: Effects of nucleotides and folding mutants. J. Mol. Biol. 258:74-87.
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 74-87
-
-
Sparrer, H.1
Lilie, H.2
Buchner, J.3
-
75
-
-
0025718955
-
Contributions of engineered surface salt-bridges to the stability of T4 lysozyme determined by directed mutagenesis
-
Sun, D. P., U. Sauer, H. Nicholson, and B. W. Matthews. 1991. Contributions of engineered surface salt-bridges to the stability of T4 lysozyme determined by directed mutagenesis. Biochemistry. 30:7142-7153.
-
(1991)
Biochemistry
, vol.30
, pp. 7142-7153
-
-
Sun, D.P.1
Sauer, U.2
Nicholson, H.3
Matthews, B.W.4
-
76
-
-
0031567782
-
The entropy cost of protein association
-
Tamura, A., and P. L. Privalov. 1997. The entropy cost of protein association. J. Mol. Biol. 273:1048-1060.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 1048-1060
-
-
Tamura, A.1
Privalov, P.L.2
-
77
-
-
0028052272
-
Contribution to antibody-antigen interaction of structurally perturbed antigenic residues upon antibody binding
-
Tsumoto, K., Y. Ueda, K. Maenaka, K. Watanabe, K. Ogasahara, K. Yutani, and I. Kumagai. 1994. Contribution to antibody-antigen interaction of structurally perturbed antigenic residues upon antibody binding. J. Biol. Chem. 269:28777-28782.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 28777-28782
-
-
Tsumoto, K.1
Ueda, Y.2
Maenaka, K.3
Watanabe, K.4
Ogasahara, K.5
Yutani, K.6
Kumagai, I.7
-
78
-
-
0028934005
-
The importance of being floppy
-
Wagner, G. 1995. The importance of being floppy. Nat. Struct. Biol. 2:255-257.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 255-257
-
-
Wagner, G.1
-
79
-
-
0029966342
-
Barriers to protein folding: Formation of buried polar interactions is a new slow step in acquisition of structure
-
Waldburger, C. D., T. Jonsson, and R. T. Sauer. 1996. Barriers to protein folding: Formation of buried polar interactions is a new slow step in acquisition of structure. Biochemistry. 93:2629-2634.
-
(1996)
Biochemistry
, vol.93
, pp. 2629-2634
-
-
Waldburger, C.D.1
Jonsson, T.2
Sauer, R.T.3
-
80
-
-
0029564595
-
Are buried salt-bridges important for protein stability and conformational specificity
-
Waldburger, C. D., J. F. Schildback, and R. T. Sauer. 1995. Are buried salt-bridges important for protein stability and conformational specificity. Nature Struc. Biol. 2:122-128.
-
(1995)
Nature Struc. Biol.
, vol.2
, pp. 122-128
-
-
Waldburger, C.D.1
Schildback, J.F.2
Sauer, R.T.3
-
81
-
-
0030761251
-
Structure and mobility of the PUT3 dimer
-
Walters, K. J., K. T. Dayie, R. J. Reece, M. Ptashne, and G. Wagner. 1997. Structure and mobility of the PUT3 dimer. Nat. Struct. Biol. 4:744-750.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 744-750
-
-
Walters, K.J.1
Dayie, K.T.2
Reece, R.J.3
Ptashne, M.4
Wagner, G.5
-
82
-
-
0021480222
-
Macroscopic models for studies of electrostatic interactions in proteins: Limitations and applicability
-
Warshel, A., S. T. Russell, and A. K. Churg. 1984. Macroscopic models for studies of electrostatic interactions in proteins: Limitations and applicability. Proc. Natl. Acad. Sci. U.S.A. 81:4785-4789.
-
(1984)
Proc. Natl. Acad. Sci. U.S.A.
, vol.81
, pp. 4785-4789
-
-
Warshel, A.1
Russell, S.T.2
Churg, A.K.3
-
83
-
-
0030821164
-
Structural insights into the evolution of an antibody combining site
-
Wedemayer, G. J., P. A. Patten, L. H. Wang, P. G. Schultz, and R. C. Stevens. 1997. Structural insights into the evolution of an antibody combining site. Science. 276:1665-1669.
-
(1997)
Science
, vol.276
, pp. 1665-1669
-
-
Wedemayer, G.J.1
Patten, P.A.2
Wang, L.H.3
Schultz, P.G.4
Stevens, R.C.5
-
85
-
-
0033603392
-
Electrostatic contributions to the stability of hyper-thermophilic proteins
-
Xiao, L., and B. Honig. 1999. Electrostatic contributions to the stability of hyper-thermophilic proteins. J. Mol. Biol. 289:1435-1444.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1435-1444
-
-
Xiao, L.1
Honig, B.2
-
86
-
-
0031561809
-
Protein binding versus protein folding: The role of hydrophilic bridges in protein associations
-
Xu, D., S. L. Lin, and R. Nussinov. 1997a. Protein binding versus protein folding: The role of hydrophilic bridges in protein associations. J. Mol. Biol. 265:68-84.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 68-84
-
-
Xu, D.1
Lin, S.L.2
Nussinov, R.3
-
87
-
-
0031450506
-
Hydrogen bonds and salt bridges across protein-protein interfaces
-
Xu, D., C. J. Tsai, and R. Nussinov. 1997b. Hydrogen bonds and salt bridges across protein-protein interfaces. Protein Eng. 10:999-1012.
-
(1997)
Protein Eng.
, vol.10
, pp. 999-1012
-
-
Xu, D.1
Tsai, C.J.2
Nussinov, R.3
-
88
-
-
0032528267
-
Insights into the molecular basis of thermal stability from the analysis of ion pair networks in the glutamate dehydrogenase family
-
Yip, K. S. P., K. L. Britton, T. J. Stillman, J. Lebbink, W. M. De Vos, F. T. Robb, C. Vetriani, D. Maeder, and D. W. Rice. 1998. Insights into the molecular basis of thermal stability from the analysis of ion pair networks in the glutamate dehydrogenase family. Eur. J. Biochem. 255:336-346.
-
(1998)
Eur. J. Biochem.
, vol.255
, pp. 336-346
-
-
Yip, K.S.P.1
Britton, K.L.2
Stillman, T.J.3
Lebbink, J.4
De Vos, W.M.5
Robb, F.T.6
Vetriani, C.7
Maeder, D.8
Rice, D.W.9
|