메뉴 건너뛰기




Volumn 31, Issue 13, 2003, Pages 3386-3392

STING Millennium: A web-based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; CHYMOTRYPSIN; CHYMOTRYPSIN A; OVOMUCOID; PROTEIN;

EID: 0042532200     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg578     Document Type: Article
Times cited : (52)

References (29)
  • 3
    • 0030851311 scopus 로고    scopus 로고
    • Cn3D: A new generation of three-dimensional molecular structure viewer
    • Hogue,C.W. (1997) Cn3D: a new generation of three-dimensional molecular structure viewer. Trends Biochem. Sci., 22, 314-316.
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 314-316
    • Hogue, C.W.1
  • 4
    • 0007690505 scopus 로고    scopus 로고
    • Sequence To and withIN graphics PDB Viewer (STING-PDB viewer)
    • July (electronic edition)
    • Neshich,G., Togawa,R.C. and Honig,B. (1998) Sequence To and withIN graphics PDB Viewer (STING-PDB viewer). PDB Quart. News., July (electronic edition), 6.
    • (1998) PDB Quart. News , pp. 6
    • Neshich, G.1    Togawa, R.C.2    Honig, B.3
  • 5
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • Sander,C. and Schneider,R. (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 6
    • 0030879419 scopus 로고    scopus 로고
    • The HSSP database of protein structure-sequence alignments
    • Schneider,R., de Daruvar,A. and Sander,C. (1997) The HSSP database of protein structure-sequence alignments. Nucleic Acids Res., 25, 226-230.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 226-230
    • Schneider, R.1    de Daruvar, A.2    Sander, C.3
  • 7
    • 0029960050 scopus 로고    scopus 로고
    • The HSSP database of protein structure-sequence alignments
    • Schneider,R. and Sander,C. (1996) The HSSP database of protein structure-sequence alignments. Nucleic Acids Res., 24, 201-205.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 201-205
    • Schneider, R.1    Sander, C.2
  • 8
    • 0028685354 scopus 로고
    • A generalized profile syntax for biomolecular sequences motifs and its function in automatic sequence interpretation
    • Altman,R., Brutlag,D., Karp,P., Lathrop,R. and Searls,D. (eds), ISMB-94; AAAIPress, Menlo Park
    • Bucher,P. and Bairoch,A. (1994) A generalized profile syntax for biomolecular sequences motifs and its function in automatic sequence interpretation. In Altman,R., Brutlag,D., Karp,P., Lathrop,R. and Searls,D. (eds), ISMB-94; Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology. AAAIPress, Menlo Park, pp. 53-61.
    • (1994) Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology , pp. 53-61
    • Bucher, P.1    Bairoch, A.2
  • 9
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls,A., Sharp,K. and Honig,B. (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins, 11, 281-296.
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.2    Honig, B.3
  • 10
    • 0037197254 scopus 로고    scopus 로고
    • A novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature
    • Tsodikov,O.V., Record,M.T. Jr. and Sergeev,Y.V. (2002) A novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature. J. Comput. Chem., 23, 600-609.
    • (2002) J. Comput. Chem. , vol.23 , pp. 600-609
    • Tsodikov, O.V.1    Record Jr., M.T.2    Sergeev, Y.V.3
  • 11
    • 0000328844 scopus 로고
    • A new vertex algorithm to calculate solvent accessible surface areas
    • Sridharan,S., Nicholls,A. and Honig,B. (1992) A new vertex algorithm to calculate solvent accessible surface areas. Biophys. J., 61, A174.
    • (1992) Biophys. J. , vol.61
    • Sridharan, S.1    Nicholls, A.2    Honig, B.3
  • 12
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometric features
    • Kabsch,W and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometric features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 13
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman,D. and Argos,P. (1995) Knowledge-based protein secondary structure assignment. Proteins, 23, 566-679.
    • (1995) Proteins , vol.23 , pp. 566-679
    • Frishman, D.1    Argos, P.2
  • 14
    • 33845280446 scopus 로고
    • Comparing the polarities of the amino-acids-side-chain distribution coefficients between the vapor-phase, cyclohexane, 1-octanol, and neutral aqueous-solution
    • Radzicka,A. and Wolfenden,R. (1988) Comparing the polarities of the amino-acids-side-chain distribution coefficients between the vapor-phase, cyclohexane, 1-octanol, and neutral aqueous-solution. Biochemistry, 27, 1664-1670.
    • (1988) Biochemistry , vol.27 , pp. 1664-1670
    • Radzicka, A.1    Wolfenden, R.2
  • 15
    • 0001244666 scopus 로고    scopus 로고
    • ScanProsite: A reference implementation of a PROSITE scanning tool
    • Gattiker,A., Gasteiger,E. and Bairoch,A. (2002) ScanProsite: a reference implementation of a PROSITE scanning tool. Appl. Bioinf, 1, 107-108.
    • (2002) Appl. Bioinf , vol.1 , pp. 107-108
    • Gattiker, A.1    Gasteiger, E.2    Bairoch, A.3
  • 20
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLON: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier,N., Gouy,M. and Gautier,C. (1996) SEAVIEW and PHYLON: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci., 1, 543-548.
    • (1996) Comput. Appl. Biosci. , vol.1 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 21
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page,R.D.M. (1996) TREEVIEW: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci., 12, 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 22
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov,I. and Bourne,P. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747.
    • (1998) Protein Eng. , vol.11 , pp. 739-747
    • Shindyalov, I.1    Bourne, P.2
  • 23
    • 0032606105 scopus 로고    scopus 로고
    • Sequence to structure alignment in comparative modeling using PrISM
    • Yang,A.-S. and Honig,B. (1999) Sequence to structure alignment in comparative modeling using PrISM. Proteins, (Suppl. 3), 66-72.
    • (1999) Proteins , Issue.SUPPL. 3 , pp. 66-72
    • Yang, A.-S.1    Honig, B.2
  • 25
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0003648125 scopus 로고
    • GCG. Genetics Computer Group, Version 7, 575 Science Drive, Madison, Wisconsin, USA
    • GCG. Genetics Computer Group, (1991) Program Manual for the GCG Package, Version 7, 575 Science Drive, Madison, Wisconsin, USA.
    • (1991) Program Manual for the GCG Package
  • 28
    • 0034121814 scopus 로고    scopus 로고
    • Design and synthesis of germline-based hemi-humanized single chain Fv against the CD18 surface antigen
    • Caldas,C.A., Coelho,V.P.C.V., Rigden,D., Neshich,G., Moro,A.M. and Brigido,M. (2000) Design and synthesis of germline-based hemi-humanized single chain Fv against the CD18 surface antigen. Protein Eng., 13, 353-360.
    • (2000) Protein Eng. , vol.13 , pp. 353-360
    • Caldas, C.A.1    Coelho, V.P.C.V.2    Rigden, D.3    Neshich, G.4    Moro, A.M.5    Brigido, M.6
  • 29
    • 0034017054 scopus 로고    scopus 로고
    • Analysis of structural and physico-chemical parameters involved in the specificity of binding between alpha-amylases and their inhibitors
    • Da Silva,M.C.M., Grossi de Sá,M.F., Chrispeels,M.J., Togawa,R.C. and Neshich,G. (2000) Analysis of structural and physico-chemical parameters involved in the specificity of binding between alpha-amylases and their inhibitors. Protein Eng., 13, 167-177.
    • (2000) Protein. Eng. , vol.13 , pp. 167-177
    • Da Silva, M.C.M.1    Grossi de Sá, M.F.2    Chrispeels, M.J.3    Togawa, R.C.4    Neshich, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.