메뉴 건너뛰기




Volumn 6, Issue 4, 2007, Pages 799-820

On the characterization of energy networks of proteins

Author keywords

Complex networks; Myoglobins; Protein structure

Indexed keywords

AMINO ACID;

EID: 37349040074     PISSN: None     EISSN: 16765680     Source Type: Journal    
DOI: None     Document Type: Conference Paper
Times cited : (8)

References (28)
  • 1
    • 8544221118 scopus 로고    scopus 로고
    • Network analysis of protein structures identifies functional residues
    • Amitai G, Shemesh A, Sitbon E, Shklar M, et al. (2004). Network analysis of protein structures identifies functional residues. J. Mol. Biol. 344: 1135-1146.
    • (2004) J. Mol. Biol , vol.344 , pp. 1135-1146
    • Amitai, G.1    Shemesh, A.2    Sitbon, E.3    Shklar, M.4
  • 2
    • 0346057951 scopus 로고    scopus 로고
    • Small-world communication of residues and significance for protein dynamics
    • Atilgan AR, Akan P and Baysal C (2004). Small-world communication of residues and significance for protein dynamics. Biophys. J. 86: 85-91.
    • (2004) Biophys. J , vol.86 , pp. 85-91
    • Atilgan, A.R.1    Akan, P.2    Baysal, C.3
  • 3
    • 9944223645 scopus 로고    scopus 로고
    • Network properties of protein structures
    • Bagler G and Sinha S (2005). Network properties of protein structures. Physica A 346: 27-33.
    • (2005) Physica A , vol.346 , pp. 27-33
    • Bagler, G.1    Sinha, S.2
  • 5
    • 0023176681 scopus 로고
    • Determinants of a protein fold. Unique features of the globin amino acid sequences
    • Bashford D, Chothia C and Lesk AM (1987). Determinants of a protein fold. Unique features of the globin amino acid sequences. J. Mol. Biol. 196: 199-216.
    • (1987) J. Mol. Biol , vol.196 , pp. 199-216
    • Bashford, D.1    Chothia, C.2    Lesk, A.M.3
  • 8
    • 28444453011 scopus 로고    scopus 로고
    • A network representation of protein structures: Implications for protein stability
    • Brinda KV and Vishveshwara S (2005). A network representation of protein structures: implications for protein stability. Biophys. J. 89: 4159-4170.
    • (2005) Biophys. J , vol.89 , pp. 4159-4170
    • Brinda, K.V.1    Vishveshwara, S.2
  • 11
    • 0037154980 scopus 로고    scopus 로고
    • Protein folding and unfolding at atomic resolution
    • Fersht AR and Daggett V (2002). Protein folding and unfolding at atomic resolution. Cell 108: 573-582.
    • (2002) Cell , vol.108 , pp. 573-582
    • Fersht, A.R.1    Daggett, V.2
  • 12
    • 0242720597 scopus 로고    scopus 로고
    • Uncovering network systems within protein structures
    • Greene LH and Higman VA (2003). Uncovering network systems within protein structures. J. Mol. Biol. 334: 781-791.
    • (2003) J. Mol. Biol , vol.334 , pp. 781-791
    • Greene, L.H.1    Higman, V.A.2
  • 13
    • 14644396645 scopus 로고    scopus 로고
    • Functional cartography of complex metabolic networks
    • Guimerá R and Nunes Amaral LA (2005). Functional cartography of complex metabolic networks. Nature 433: 895-900.
    • (2005) Nature , vol.433 , pp. 895-900
    • Guimerá, R.1    Nunes Amaral, L.A.2
  • 14
    • 0028063281 scopus 로고
    • Stability of myoglobin: A model for the folding of heme proteins
    • Hargrove MS, Krzywda S, Wilkinson AJ, Dou Y, et al. (1994). Stability of myoglobin: a model for the folding of heme proteins. Biochemistry 33: 11767-11775.
    • (1994) Biochemistry , vol.33 , pp. 11767-11775
    • Hargrove, M.S.1    Krzywda, S.2    Wilkinson, A.J.3    Dou, Y.4
  • 15
    • 13244256932 scopus 로고    scopus 로고
    • Sting millennium suite: Integrated software for extensive analyses of 3D structures of proteins and their complexes
    • Higa RH, Togawa RC, Montagner AJ, Palandrani JC, et al. (2004). Sting millennium suite: integrated software for extensive analyses of 3D structures of proteins and their complexes. BMC Bioinformatics 5: 107.
    • (2004) BMC Bioinformatics , vol.5 , pp. 107
    • Higa, R.H.1    Togawa, R.C.2    Montagner, A.J.3    Palandrani, J.C.4
  • 16
    • 0037345719 scopus 로고    scopus 로고
    • Subnetwork hierarchies of biochemical pathways
    • Holme P, Huss M and Jeong H (2003). Subnetwork hierarchies of biochemical pathways. Bioinformatics 19: 532-538.
    • (2003) Bioinformatics , vol.19 , pp. 532-538
    • Holme, P.1    Huss, M.2    Jeong, H.3
  • 17
    • 0028843842 scopus 로고
    • Alignment of 700 globin sequences: Extent of amino acid substitution and its correlation with variation in volume
    • Kapp OH, Moens L, Vanfleteren J, Trotman CN, et al. (1995). Alignment of 700 globin sequences: extent of amino acid substitution and its correlation with variation in volume. Protein Sci. 4: 2179-2190.
    • (1995) Protein Sci , vol.4 , pp. 2179-2190
    • Kapp, O.H.1    Moens, L.2    Vanfleteren, J.3    Trotman, C.N.4
  • 18
    • 0019332167 scopus 로고
    • How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
    • Lesk AM and Chothia C (1980). How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins. J. Mol. Biol. 136: 225-270.
    • (1980) J. Mol. Biol , vol.136 , pp. 225-270
    • Lesk, A.M.1    Chothia, C.2
  • 19
    • 11644261806 scopus 로고    scopus 로고
    • Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function
    • Morris GM, Goodsell DS, Halliday RS, Huey R, et al. (1998). Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function. J. Comput. Chem. 19: 1639-1662.
    • (1998) J. Comput. Chem , vol.19 , pp. 1639-1662
    • Morris, G.M.1    Goodsell, D.S.2    Halliday, R.S.3    Huey, R.4
  • 20
    • 0038718854 scopus 로고    scopus 로고
    • The structure and function of complex networks
    • Newman MEJ (2003). The structure and function of complex networks. SIAM Rev. 45: 167-256.
    • (2003) SIAM Rev , vol.45 , pp. 167-256
    • Newman, M.E.J.1
  • 23
    • 0033588067 scopus 로고    scopus 로고
    • Non-functional conserved residues in globins and their possible role as a folding nucleus
    • Ptitsyn OB and Ting KL (1999). Non-functional conserved residues in globins and their possible role as a folding nucleus. J. Mol. Biol. 291: 671-682.
    • (1999) J. Mol. Biol , vol.291 , pp. 671-682
    • Ptitsyn, O.B.1    Ting, K.L.2
  • 24
    • 0027815614 scopus 로고
    • An analysis of packing in the protein folding problem
    • Richards FM and Lim WA (1994). An analysis of packing in the protein folding problem. Q. Rev. Biophys. 26: 432-598.
    • (1994) Q. Rev. Biophys , vol.26 , pp. 432-598
    • Richards, F.M.1    Lim, W.A.2
  • 25
    • 13044272912 scopus 로고    scopus 로고
    • Automated analysis of interatomic contacts in proteins
    • Sobolev V, Sorokine A, Prilusky J, Abola EE, et al. (1999). Automated analysis of interatomic contacts in proteins. Bioinformatics 15: 327-332.
    • (1999) Bioinformatics , vol.15 , pp. 327-332
    • Sobolev, V.1    Sorokine, A.2    Prilusky, J.3    Abola, E.E.4
  • 26
    • 0037219686 scopus 로고    scopus 로고
    • Evolutionarily conserved networks of residues mediate allosteric communication in proteins
    • Süel GM, Lockless SW, Wall MA and Ranganathan R (2002). Evolutionarily conserved networks of residues mediate allosteric communication in proteins. Nat. Structural Biol. 10: 59-69.
    • (2002) Nat. Structural Biol , vol.10 , pp. 59-69
    • Süel, G.M.1    Lockless, S.W.2    Wall, M.A.3    Ranganathan, R.4
  • 28
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of 'small-world' networks
    • Watts DJ and Strogatz SH (1998). Collective dynamics of 'small-world' networks. Nature 393: 440-442.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.