Multiplexed genotyping of ABC transporter polymorphisms with the Bioplex suspension array

Biological Procedures Online

Volumn 9, Issue 1, 2007, Pages 27-42

  Koo, Seok Hwee ^a   Ong, Tan Ching ^a   Chong, Kok Ting ^a   Lee, Caroline Guat Lay ^a   Chew, Fook Tim ^a   Lee, Edmund Jon Deoon ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Genetic; Genotype; Microspheres; Polymorphism

Indexed keywords

ABC TRANSPORTER;

ADULT; ARTICLE; BIOPLEX SUSPENSION ARRAY; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DNA SEQUENCE; DRUG RESPONSE; GENETIC POLYMORPHISM; GENETIC RISK; GENETIC SCREENING; GENOTYPE; HIGH THROUGHPUT SCREENING; HUMAN; INTERMETHOD COMPARISON; MARKER GENE; MULTIPLEX POLYMERASE CHAIN REACTION; MUTATIONAL ANALYSIS; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; RELIABILITY; SINGLE NUCLEOTIDE POLYMORPHISM; VALIDATION PROCESS;

EID: 37249070232     PISSN: 14809222     EISSN: None     Source Type: Journal    
DOI: 10.1251/bpo131     Document Type: Article

References (25)

1. Evans WE, Johnson JA. Pharmacogenomics: the inherited basis for interindividual differences in drug response. Annu Rev Genomics Hum Genet 2001; 2:9-39.
2. Evans WE, Relling MV. Pharmacogenomics: translating functional genomics into rational therapeutics. Science 1999; 286:487-491.
3. Kleyn PW, Vesell ES. Genetic variation as a guide to drug development. Science 1998; 281:1820-1821.
4. Severino G, Chillotti C, Stochino ME, Del Zompo M. Pharmacogenomics: state of the research and perspectives in clinical application. Neurol Sci 2003; 24:S146-148.
5. Koo SH, Lee EJ. Pharmacogenetics approach to therapeutics. Clin Exp Pharmacol Physiol 2006; 33:525-532.
6. Itoh Y, Inoko H, Kulski JY, Sasaki S, Meguro A, Takiyama N, Nishida T, Yuasa T, Ohno S, Mizuki N. Four-digit allele genotyping of the HLA-A and HLA-B genes in Japanese patients with Behcet's disease by a PCR-SSOP-Luminex method. Tissue Antigens 2006; 67:390-394.
7. Itoh Y, Mizuki N, Shimada T, Azuma F, Itakura M, Kashiwase Y, Kikkawa E, Kulski JK, Satake M, Inoko H. High-throughput DNA typing of HLA-A, -B, -C, and -DRB1 loci by a PCR-SSOP-Luminex method in the Japanese population. Immunogenetics 2005; 57:717-729.
8. Pietz BC, Warden MB, DuChateau BK, Ellis TM. Multiplex genotyping of human minor histocompatibility antigens. Hum Immunol 2005; 66:1174-1182.
9. Pickering JW, McMillin GA, Gedge F, Hill HR, Lyon E. Flow cytometric assay for genotyping cytochrome p450 2C9 and 2C19: comparison with a microelectronic DNA array. Am J Pharmacogenomics 2004; 4:199-207.
10. Zhu Y, Hein DW, Doll MA, Reynolds KK, Abudu N, Valdes Jr R, Linder MW. Simultaneous determination of 7 N-acetyltransferase-2 single-nucleotide variations by allele-specific primer extension assay. Clin Chem 2006; 52:1033-1039.
11. Bortolin S, Black M, Modi H, Boszko I, Kobler D, Fieldhouse D, Lopes E, Lacroix JM, Grimwood R, Wells P, Janeczko R, Zastawny R. Analytical validation of the tag-it high-throughput microsphere-based universal array genotyping platform: application to the multiplex detection of a panel of thrombophilia-associated single-nucleotide polymorphisms. Clin Chem 2004; 50:2028-2036.
12. Colinas RJ, Bellisario R, Pass KA. Multiplexed genotyping of beta-globin variants from PCR-amplified newborn blood spot DNA by hybridization with allele-specific oligodeoxynucleotides coupled to an array of fluorescent microspheres. Clin Chem 2000; 46:996-998.
13. Diaz MR, Fell JW. High-throughput detection of pathogenic yeasts of the genus trichosporon. J Clin Microbiol 2004; 42:3696-3706.
14. Strom CM, Janeczko RA, Anderson B, Redman J, Quan F, Buller A, McGinniss MJ, Sun WM. Technical validation of a multiplex platform to detect thirty mutations in eight genetic diseases prevalent in individuals of Ashkenazi Jewish descent. Genet Med 2005; 7:633-639.
15. Cowan LS, Diem L, Brake MC, Crawford JT. Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system. J Clin Microbiol 2004; 42:474-477.
16. Jiang HL, Zhu HH, Zhou LF, Chen F, Chen Z. Genotyping of human papillomavirus in cervical lesions by L1 consensus PCR and the Luminex xMAP system. J Med Microbiol 2006; 55:715-720.
17. Schmitt M, Bravo IG, Snijders PJ, Gissmann L, Pawlita M, Waterboer T. Bead-based multiplex genotyping of human papillomaviruses. J Clin Microbiol 2006; 44:504-512.
18. Ye F, Li MS, Taylor JD, Nguyen Q, Colton HM, Casey WM, Wagner M, Weiner MP, Chen J. Fluorescent microsphere-based readout technology for multiplexed human single nucleotide polymorphism analysis and bacterial identification. Hum Mutat 2001; 17:305-316.
19. Dunbar SA, Vander Zee CA, Oliver KG, Karem KL, Jacobson JW. Quantitative, multiplexed detection of bacterial pathogens: DNA and protein applications of the Luminex LabMAP system. J Microbiol Methods 2003; 53:245-252.
20. Spiro A, Lowe M, Brown D. A bead-based method for multiplexed identification and quantitation of DNA sequences using flow cytometry. Appl Environ Microbiol 2000; 66:4258-4265.
21. Gwee PC, Tang K, Chua JM, Lee EJ, Chong SS, Lee CG. Simultaneous genotyping of seven single-nucleotide polymorphisms in the MDR1 gene by single-tube multiplex minisequencing. Clin Chem 2003; 49:672-676.
22. Gwee PC, Tang K, Sew PH, Lee EJ, Chong SS, Lee CG. Strong linkage disequilibrium at the nucleotide analogue transporter ABCC5 gene locus. Pharmacogenet Genomics 2005; 15:91-104.
23. Wang Z, Wang B, Tang K, Lee EJ, Chong SS, Lee CG. A functional polymorphism within the MRP1 gene locus identified through its genomic signature of positive selection. Hum Mol Genet 2005; 14:2075-2087.
24. Lee SH, Walker DR, Cregan PB, Boerma HR. Comparison of four flow cytometric SNP detection assays and their use in plant improvement. Theor Appl Genet 2004; 110:167-174.
25. Taylor JD, Briley D, Nguyen O, Long K, Iannone MA, Li MS, Ye F, Afshari A, Lai E, Wagner M, Chen J, Weiner MP. Flow cytometric platform for high-throughput single nucleotide polymorphism analysis. Biotechniques 2001; 30:661-666, 668-669.