-
1
-
-
28544431839
-
Gene expression analysis and clinical diagnosis
-
10.1016/j.cccn.2005.05.046 16168978
-
Sandvik AK Alsberg BK Norsett KG Yadetie F Waldum HL Laegreid A Gene expression analysis and clinical diagnosis Clin Chim Acta 2006, 363(1-2):157-164 10.1016/j.cccn.2005.05.046 16168978
-
(2006)
Clin Chim Acta
, vol.363
, Issue.1-2
, pp. 157-164
-
-
Sandvik, A.K.1
Alsberg, B.K.2
Norsett, K.G.3
Yadetie, F.4
Waldum, H.L.5
Laegreid, A.6
-
2
-
-
0141561891
-
Integrating 'omic' information: A bridge between genomics and systems biology
-
10.1016/j.tig.2003.08.009 14550629
-
Ge H Walhout AJM Vidal M Integrating 'omic' information: A bridge between genomics and systems biology Trends in Genetics 2003, 19(10):551-560 10.1016/j.tig.2003.08.009 14550629
-
(2003)
Trends in Genetics
, vol.19
, Issue.10
, pp. 551-560
-
-
Ge, H.1
Walhout, A.J.M.2
Vidal, M.3
-
3
-
-
0036500993
-
Systems biology: A brief overview
-
10.1126/science.1069492 11872829
-
Kitano H Systems biology: A brief overview Science 2002, 295(5560):1662-1664 10.1126/science.1069492 11872829
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1662-1664
-
-
Kitano, H.1
-
4
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
10.1038/nrg1749 16369572
-
Allison DB Cui X Page GP Sabripour M Microarray data analysis: From disarray to consolidation and consensus Nat Rev Genet 2006, 7(1):55-65 10.1038/nrg1749 16369572
-
(2006)
Nat Rev Genet
, vol.7
, Issue.1
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
5
-
-
13844280572
-
The development of microarray standards
-
10.1007/s00216-004-2825-5 15614502
-
Andersen MT Foy CA The development of microarray standards Anal Bioanal Chem 2005, 381(1):87-89 10.1007/s00216-004-2825-5 15614502
-
(2005)
Anal Bioanal Chem
, vol.381
, Issue.1
, pp. 87-89
-
-
Andersen, M.T.1
Foy, C.A.2
-
6
-
-
2442719003
-
Universal Reference RNA as a standard for microarray experiments
-
394318 15113400 10.1186/1471-2164-5-20
-
Novoradovskaya N Whitfield ML Basehore LS Novoradovsky A Pesich R Usary J Karaca M Wong WK Aprelikova O Fero M Perou CM Botstein D Braman J Universal Reference RNA as a standard for microarray experiments BMC Genomics 2004, 5(1):20 394318 15113400 10.1186/1471-2164-5-20
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 20
-
-
Novoradovskaya, N.1
Whitfield, M.L.2
Basehore, L.S.3
Novoradovsky, A.4
Pesich, R.5
Usary, J.6
Karaca, M.7
Wong, W.K.8
Aprelikova, O.9
Fero, M.10
Perou, C.M.11
Botstein, D.12
Braman, J.13
-
7
-
-
8844269509
-
In control: Systematic assessment of microarray performance
-
1299153 15459748 10.1038/sj.embor.7400253
-
van Bakel H Holstege FC In control: Systematic assessment of microarray performance EMBO Rep 2004, 5(10):964-969 1299153 15459748 10.1038/ sj.embor.7400253
-
(2004)
EMBO Rep
, vol.5
, Issue.10
, pp. 964-969
-
-
van Bakel, H.1
Holstege, F.C.2
-
8
-
-
34249025772
-
The End of the Microarray Tower of Babel: Will Universal Standards Lead the Way?
-
16870711
-
Kawasaki ES The End of the Microarray Tower of Babel: Will Universal Standards Lead the Way? J Biomol Tech 2006, 17(3):200-206 16870711
-
(2006)
J Biomol Tech
, vol.17
, Issue.3
, pp. 200-206
-
-
Kawasaki, E.S.1
-
9
-
-
33746218196
-
Standards for systems biology
-
10.1038/nrg1922 16847461
-
Brazma A Krestyaninova M Sarkans U Standards for systems biology Nat Rev Genet 2006, 7(8):593-605 10.1038/nrg1922 16847461
-
(2006)
Nat Rev Genet
, vol.7
, Issue.8
, pp. 593-605
-
-
Brazma, A.1
Krestyaninova, M.2
Sarkans, U.3
-
10
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
10.1038/nbt1239 16964229
-
Shi L Reid LH Jones WD Shippy R Warrington JA Baker SC Collins PJ de Longueville F Kawasaki ES Lee KY Luo Y Sun YA Willey JC Setterquist RA Fischer GM Tong W Dragan YP Dix DJ Frueh FW Goodsaid FM Herman D Jensen RV Johnson CD Lobenhofer EK Puri RK Schrf U Thierry-Mieg J Wang C Wilson M Wolber PK Zhang L Amur S Bao W Barbacioru CC Lucas AB Bertholet V Boysen C Bromley B Brown D Brunner A Canales R Cao XM Cebula TA Chen JJ Cheng J Chu TM Chudin E Corson J Corton JC Croner LJ Davies C Davison TS Delenstarr G Deng X Dorris D Eklund AC Fan XH Fang H Fulmer-Smentek S Fuscoe JC Gallagher K Ge W Guo L Guo X Hager J Haje PK Han J Han T Harbottle HC Harris SC Hatchwell E Hauser CA Hester S Hong H Hurban P Jackson SA Ji H Knight CR Kuo WP LeClerc JE Levy S Li QZ Liu C Liu Y Lombardi MJ Ma Y Magnuson SR Maqsodi B McDaniel T Mei N Myklebost O Ning B Novoradovskaya N Orr MS Osborn TW Papallo A Patterson TA Perkins RG Peters EH Peterson R Philips KL Pine PS Pusztai L Qian F Ren H Rosen M Rosenzweig BA Samaha RR Schena M Schroth GP Shchegrova S Smith DD Staedtler F Su Z Sun H Szallasi Z Tezak Z Thierry-Mieg D Thompson KL Tikhonova I Turpaz Y Vallanat B Van C Walker SJ Wang SJ Wang Y Wolfinger R Wong A Wu J Xiao C Xie Q Xu J Yang W Zhang L Zhong S Zong Y Slikker W Jr. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Nat Biotechnol 2006, 24(9):1151-1161 10.1038/nbt1239 16964229
-
(2006)
Nat Biotechnol
, vol.24
, Issue.9
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
Baker, S.C.6
Collins, P.J.7
de Longueville, F.8
Kawasaki, E.S.9
Lee, K.Y.10
Luo, Y.11
Sun, Y.A.12
Willey, J.C.13
Setterquist, R.A.14
Fischer, G.M.15
Tong, W.16
Dragan, Y.P.17
Dix, D.J.18
Frueh, F.W.19
Goodsaid, F.M.20
Herman, D.21
Jensen, R.V.22
Johnson, C.D.23
Lobenhofer, E.K.24
Puri, R.K.25
Schrf, U.26
Thierry-Mieg, J.27
Wang, C.28
Wilson, M.29
Wolber, P.K.30
Zhang, L.31
Amur, S.32
Bao, W.33
Barbacioru, C.C.34
Lucas, A.B.35
Bertholet, V.36
Boysen, C.37
Bromley, B.38
Brown, D.39
Brunner, A.40
Canales, R.41
Cao, X.M.42
Cebula, T.A.43
Chen, J.J.44
Cheng, J.45
Chu, T.M.46
Chudin, E.47
Corson, J.48
Corton, J.C.49
Croner, L.J.50
Davies, C.51
Davison, T.S.52
Delenstarr, G.53
Deng, X.54
Dorris, D.55
Eklund, A.C.56
Fan, X.H.57
Fang, H.58
Fulmer-Smentek, S.59
Fuscoe, J.C.60
Gallagher, K.61
Ge, W.62
Guo, L.63
Guo, X.64
Hager, J.65
Haje, P.K.66
Han, J.67
Han, T.68
Harbottle, H.C.69
Harris, S.C.70
Hatchwell, E.71
Hauser, C.A.72
Hester, S.73
Hong, H.74
Hurban, P.75
Jackson, S.A.76
Ji, H.77
Knight, C.R.78
Kuo, W.P.79
LeClerc, J.E.80
Levy, S.81
Li, Q.Z.82
Liu, C.83
Liu, Y.84
Lombardi, M.J.85
Ma, Y.86
Magnuson, S.R.87
Maqsodi, B.88
McDaniel, T.89
Mei, N.90
Myklebost, O.91
Ning, B.92
Novoradovskaya, N.93
Orr, M.S.94
Osborn, T.W.95
Papallo, A.96
Patterson, T.A.97
Perkins, R.G.98
Peters, E.H.99
Peterson, R.100
Philips, K.L.101
Pine, P.S.102
Pusztai, L.103
Qian, F.104
Ren, H.105
Rosen, M.106
Rosenzweig, B.A.107
Samaha, R.R.108
Schena, M.109
Schroth, G.P.110
Shchegrova, S.111
Smith, D.D.112
Staedtler, F.113
Su, Z.114
Sun, H.115
Szallasi, Z.116
Tezak, Z.117
Thierry-Mieg, D.118
Thompson, K.L.119
Tikhonova, I.120
Turpaz, Y.121
Vallanat, B.122
Van, C.123
Walker, S.J.124
Wang, S.J.125
Wang, Y.126
Wolfinger, R.127
Wong, A.128
Wu, J.129
Xiao, C.130
Xie, Q.131
Xu, J.132
Yang, W.133
Zhang, L.134
Zhong, S.135
Zong, Y.136
Slikker Jr., W.137
more..
-
11
-
-
33847240050
-
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions
-
1683572 17118138 10.1186/1471-2105-7-S2-S17
-
Han T Melvin CD Shi L Branham WS Moland CL Pine PS Thompson KL Fuscoe JC Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions BMC Bioinformatics 2006,(7 Suppl 2):S17 1683572 17118138 10.1186/1471-2105-7-S2-S17
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 2
-
-
Han, T.1
Melvin, C.D.2
Shi, L.3
Branham, W.S.4
Moland, C.L.5
Pine, P.S.6
Thompson, K.L.7
Fuscoe, J.C.8
-
12
-
-
31144477774
-
Use of a mixed tissue RNA design for performance assessments on multiple microarray formats
-
1322274 16377776 10.1093/nar/gni186
-
Thompson KL Rosenzweig BA Pine PS Retief J Turpaz Y Afshari CA Hamadeh HK Damore MA Boedigheimer M Blomme E Ciurlionis R Waring JF Fuscoe JC Paules R Tucker CJ Fare T Coffey EM He Y Collins PJ Jarnagin K Fujimoto S Ganter B Kiser G Kaysser-Kranich T Sina J Sistare FD Use of a mixed tissue RNA design for performance assessments on multiple microarray formats Nucleic Acids Res 2005, 33(22):e187 1322274 16377776 10.1093/nar/ gni186
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.22
-
-
Thompson, K.L.1
Rosenzweig, B.A.2
Pine, P.S.3
Retief, J.4
Turpaz, Y.5
Afshari, C.A.6
Hamadeh, H.K.7
Damore, M.A.8
Boedigheimer, M.9
Blomme, E.10
Ciurlionis, R.11
Waring, J.F.12
Fuscoe, J.C.13
Paules, R.14
Tucker, C.J.15
Fare, T.16
Coffey, E.M.17
He, Y.18
Collins, P.J.19
Jarnagin, K.20
Fujimoto, S.21
Ganter, B.22
Kiser, G.23
Kaysser-Kranich, T.24
Sina, J.25
Sistare, F.D.26
more..
-
13
-
-
0242475343
-
A novel strategy for microarray quality control using Bayesian networks
-
10.1093/bioinformatics/btg275 14594707
-
Hautaniemi S Edgren H Vesanen P Wolf M Jarvinen AK Yli-Harja O Astola J Kallioniemi O Monni O A novel strategy for microarray quality control using Bayesian networks Bioinformatics 2003, 19(16):2031-2038 10.1093/ bioinformatics/btg275 14594707
-
(2003)
Bioinformatics
, vol.19
, Issue.16
, pp. 2031-2038
-
-
Hautaniemi, S.1
Edgren, H.2
Vesanen, P.3
Wolf, M.4
Jarvinen, A.K.5
Yli-Harja, O.6
Astola, J.7
Kallioniemi, O.8
Monni, O.9
-
14
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
(Article 3) 16646809
-
Smyth GK Linear models and empirical bayes methods for assessing differential expression in microarray experiments Stat Appl Genet Mol Biol 2004, 3 (Article 3) 16646809
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
15
-
-
25444446813
-
Evaluation of normalization methods for cDNA microarray data by k-NN classification
-
1201132 16045803 10.1186/1471-2105-6-191
-
Wu W Xing EP Myers C Mian IS Bissell MJ Evaluation of normalization methods for cDNA microarray data by k-NN classification BMC Bioinformatics 2005 6:191 1201132 16045803 10.1186/1471-2105-6-191
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 191
-
-
Wu, W.1
Xing, E.P.2
Myers, C.3
Mian, I.S.4
Bissell, M.J.5
-
16
-
-
33751161871
-
Evaluating different methods of microarray data normalization
-
1636075 17059609 10.1186/1471-2105-7-469
-
Fujita A Sato J Rodrigues L Ferreira C Sogayar M Evaluating different methods of microarray data normalization BMC Bioinformatics 2006, 7(1):469 1636075 17059609 10.1186/1471-2105-7-469
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 469
-
-
Fujita, A.1
Sato, J.2
Rodrigues, L.3
Ferreira, C.4
Sogayar, M.5
-
17
-
-
9144268360
-
Empirical evaluation of data transformations and ranking statistics for microarray analysis
-
524279 15479783 10.1093/nar/gkh866
-
Qin LX Kerr KF Empirical evaluation of data transformations and ranking statistics for microarray analysis Nucleic Acids Res 2004, 32(18):5471-5479 524279 15479783 10.1093/nar/gkh866
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.18
, pp. 5471-5479
-
-
Qin, L.X.1
Kerr, K.F.2
-
18
-
-
27644570334
-
Quality determination and the repair of poor quality spots in array experiments
-
1262693 16185360 10.1186/1471-2105-6-234
-
Tom BD Gilks WR Brooke-Powell ET Ajioka JW Quality determination and the repair of poor quality spots in array experiments BMC Bioinformatics 2005, 6:234 1262693 16185360 10.1186/1471-2105-6-234
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 234
-
-
Tom, B.D.1
Gilks, W.R.2
Brooke-Powell, E.T.3
Ajioka, J.W.4
-
19
-
-
0036898577
-
Microarray data normalization and transformation
-
10.1038/ng1032 12454644
-
Quackenbush J Microarray data normalization and transformation Nat Genet 2002, 32 Suppl:496-501 10.1038/ng1032 12454644
-
(2002)
Nat Genet
, vol.32
, Issue.SUPPL.
, pp. 496-501
-
-
Quackenbush, J.1
-
20
-
-
27644547502
-
MASQOT: A method for cDNA microarray spot quality control
-
1276784 16223442 10.1186/1471-2105-6-250
-
Bylesjo M Eriksson D Sjodin A Sjostrom M Jansson S Antti H Trygg J MASQOT: A method for cDNA microarray spot quality control BMC Bioinformatics 2005, 6:250 1276784 16223442 10.1186/1471-2105-6-250
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 250
-
-
Bylesjo, M.1
Eriksson, D.2
Sjodin, A.3
Sjostrom, M.4
Jansson, S.5
Antti, H.6
Trygg, J.7
-
21
-
-
0037620675
-
Non-linear normalization and background correction in one-channel cDNA microarray studies
-
10.1093/bioinformatics/btg083 12724292
-
Edwards D Non-linear normalization and background correction in one-channel cDNA microarray studies Bioinformatics 2003, 19(7):825-833 10.1093/bioinformatics/btg083 12724292
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 825-833
-
-
Edwards, D.1
-
22
-
-
13244249632
-
XHM: A system for detection of potential cross hybridizations in DNA microarrays
-
517492 15333145 10.1186/1471-2105-5-117
-
Flikka K Yadetie F Laegreid A Jonassen I XHM: A system for detection of potential cross hybridizations in DNA microarrays BMC Bioinformatics 2004, 5:117 517492 15333145 10.1186/1471-2105-5-117
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 117
-
-
Flikka, K.1
Yadetie, F.2
Laegreid, A.3
Jonassen, I.4
-
23
-
-
14844364789
-
Post-analysis follow-up and validation of microarray experiments
-
10.1038/ng1034 12454646
-
Chuaqui RF Bonner RF Best CJ Gillespie JW Flaig MJ Hewitt SM Phillips JL Krizman DB Tangrea MA Ahram M Linehan WM Knezevic V Emmert-Buck MR Post-analysis follow-up and validation of microarray experiments Nat Genet 2002, 32 Suppl:509-514 10.1038/ng1034 12454646
-
(2002)
Nat Genet
, vol.32
, Issue.SUPPL.
, pp. 509-514
-
-
Chuaqui, R.F.1
Bonner, R.F.2
Best, C.J.3
Gillespie, J.W.4
Flaig, M.J.5
Hewitt, S.M.6
Phillips, J.L.7
Krizman, D.B.8
Tangrea, M.A.9
Ahram, M.10
Linehan, W.M.11
Knezevic, V.12
Emmert-Buck, M.R.13
-
24
-
-
33645138314
-
A multivariate prediction model for microarray cross-hybridization
-
1409802 16509965 10.1186/1471-2105-7-101
-
Chen Y Chou CC Lu X Slate E Peck K Xu W Voit E Almeida J A multivariate prediction model for microarray cross-hybridization BMC Bioinformatics 2006, 7(1):101 1409802 16509965 10.1186/1471-2105-7-101
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 101
-
-
Chen, Y.1
Chou, C.C.2
Lu, X.3
Slate, E.4
Peck, K.5
Xu, W.6
Voit, E.7
Almeida, J.8
-
25
-
-
2642518682
-
Evidence of systematic expressed sequence tag IMAGE clone cross-hybridization on cDNA microarrays
-
10.1016/j.ygeno.2003.12.010 15177570
-
Handley D Serban N Peters D O'Doherty R Field M Wasserman L Spirtes P Scheines R Glymour C Evidence of systematic expressed sequence tag IMAGE clone cross-hybridization on cDNA microarrays Genomics 2004, 83(6):1169-1175 10.1016/j.ygeno.2003.12.010 15177570
-
(2004)
Genomics
, vol.83
, Issue.6
, pp. 1169-1175
-
-
Handley, D.1
Serban, N.2
Peters, D.3
O'Doherty, R.4
Field, M.5
Wasserman, L.6
Spirtes, P.7
Scheines, R.8
Glymour, C.9
-
26
-
-
0029124186
-
Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones
-
10.1006/geno.1995.1233 8530073
-
Nguyen C Rocha D Granjeaud S Baldit M Bernard K Naquet P Jordan BR Differential gene expression in the murine thymus assayed by quantitative hybridization of arrayed cDNA clones Genomics 1995, 29(1):207-216 10.1006/geno.1995.1233 8530073
-
(1995)
Genomics
, vol.29
, Issue.1
, pp. 207-216
-
-
Nguyen, C.1
Rocha, D.2
Granjeaud, S.3
Baldit, M.4
Bernard, K.5
Naquet, P.6
Jordan, B.R.7
-
27
-
-
9144249203
-
Outliers involving the Poly(A) effect among highly-expressed genes in microarrays
-
140022 12479797 10.1186/1471-2164-3-35
-
Pan SJ Rigney DR Ivy JL Outliers involving the Poly(A) effect among highly-expressed genes in microarrays BMC Genomics 2002, 3(1):35 140022 12479797 10.1186/1471-2164-3-35
-
(2002)
BMC Genomics
, vol.3
, Issue.1
, pp. 35
-
-
Pan, S.J.1
Rigney, D.R.2
Ivy, J.L.3
-
28
-
-
6344277190
-
LNA (locked nucleic acid): High-affinity targeting of complementary RNA and DNA
-
10.1021/bi0485732 15491130
-
Vester B Wengel J LNA (locked nucleic acid): High-affinity targeting of complementary RNA and DNA Biochemistry 2004, 43(42):13233-13241 10.1021/ bi0485732 15491130
-
(2004)
Biochemistry
, vol.43
, Issue.42
, pp. 13233-13241
-
-
Vester, B.1
Wengel, J.2
-
30
-
-
33750713346
-
GeneTools - Application for functional annotation and statistical hypothesis testing
-
1630634 17062145 10.1186/1471-2105-7-470
-
Beisvag V Junge FK Bergum H Jolsum L Lydersen S Gunther CC Ramampiaro H Langaas M Sandvik AK Laegreid A GeneTools - application for functional annotation and statistical hypothesis testing BMC Bioinformatics 2006, 7:470 1630634 17062145 10.1186/1471-2105-7-470
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 470
-
-
Beisvag, V.1
Junge, F.K.2
Bergum, H.3
Jolsum, L.4
Lydersen, S.5
Gunther, C.C.6
Ramampiaro, H.7
Langaas, M.8
Sandvik, A.K.9
Laegreid, A.10
-
31
-
-
33845345622
-
A rapid method for microarray cross platform comparisons using gene expression signatures
-
10.1016/j.mcp.2006.07.004 16982174
-
Cheadle C Becker KG Cho-Chung YS Nesterova M Watkins T Wood W 3rd Prabhu V Barnes KC A rapid method for microarray cross platform comparisons using gene expression signatures Mol Cell Probes 2007, 21(1):35-46 10.1016/j.mcp.2006.07.004 16982174
-
(2007)
Mol Cell Probes
, vol.21
, Issue.1
, pp. 35-46
-
-
Cheadle, C.1
Becker, K.G.2
Cho-Chung, Y.S.3
Nesterova, M.4
Watkins, T.5
Wood III, W.6
Prabhu, V.7
Barnes, K.C.8
-
32
-
-
18244378238
-
Independence and reproducibility across microarray platforms
-
10.1038/nmeth757 15846360
-
Larkin JE Frank BC Gavras H Sultana R Quackenbush J Independence and reproducibility across microarray platforms Nat Methods 2005, 2(5):337-344 10.1038/nmeth757 15846360
-
(2005)
Nat Methods
, vol.2
, Issue.5
, pp. 337-344
-
-
Larkin, J.E.1
Frank, B.C.2
Gavras, H.3
Sultana, R.4
Quackenbush, J.5
-
33
-
-
34248183381
-
Cross platform microarray analysis for robust identification of differentially expressed genes
-
1885857 17430572 10.1186/1471-2105-8-S1-S5
-
Bosotti R Locatelli G Healy S Scacheri E Sartori L Mercurio C Calogero R Isacchi A Cross platform microarray analysis for robust identification of differentially expressed genes BMC Bioinformatics 2007, 8 Suppl 1:S5 1885857 17430572 10.1186/1471-2105-8-S1-S5
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 1
-
-
Bosotti, R.1
Locatelli, G.2
Healy, S.3
Scacheri, E.4
Sartori, L.5
Mercurio, C.6
Calogero, R.7
Isacchi, A.8
-
34
-
-
33845624887
-
Microarray validation: Factors influencing correlation between oligonucleotide microarrays and real-time PCR
-
1779618 17242735 10.1251/bpo126
-
Morey JS Ryan JC Van Dolah FM Microarray validation: Factors influencing correlation between oligonucleotide microarrays and real-time PCR Biol Proced Online 2006, 8:175-193 1779618 17242735 10.1251/bpo126
-
(2006)
Biol Proced Online
, vol.8
, pp. 175-193
-
-
Morey, J.S.1
Ryan, J.C.2
Van Dolah, F.M.3
-
35
-
-
33645808222
-
Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
-
1435885 16551369 10.1186/1471-2164-7-59
-
Wang Y Barbacioru C Hyland F Xiao W Hunkapiller KL Blake J Chan F Gonzalez C Zhang L Samaha RR Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays BMC Genomics 2006, 7:59 1435885 16551369 10.1186/ 1471-2164-7-59
-
(2006)
BMC Genomics
, vol.7
, pp. 59
-
-
Wang, Y.1
Barbacioru, C.2
Hyland, F.3
Xiao, W.4
Hunkapiller, K.L.5
Blake, J.6
Chan, F.7
Gonzalez, C.8
Zhang, L.9
Samaha, R.R.10
-
36
-
-
25444486426
-
Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR - How well do they correlate?
-
1142514 15854232 10.1186/1471-2164-6-59
-
Dallas PB Gottardo NG Firth MJ Beesley AH Hoffmann K Terry PA Freitas JR Boag JM Cummings AJ Kees UR Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate? BMC Genomics 2005, 6(1):59 1142514 15854232 10.1186/1471-2164-6-59
-
(2005)
BMC Genomics
, vol.6
, Issue.1
, pp. 59
-
-
Dallas, P.B.1
Gottardo, N.G.2
Firth, M.J.3
Beesley, A.H.4
Hoffmann, K.5
Terry, P.A.6
Freitas, J.R.7
Boag, J.M.8
Cummings, A.J.9
Kees, U.R.10
-
37
-
-
18944389718
-
Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells
-
10.1038/sj.bjc.6602535 15846300
-
Hofsli E Thommesen L Yadetie F Langaas M Kusnierczyk W Falkmer U Sandvik AK Laegreid A Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells Br J Cancer 2005, 92(8):1506-1516 10.1038/sj.bjc.6602535 15846300
-
(2005)
Br J Cancer
, vol.92
, Issue.8
, pp. 1506-1516
-
-
Hofsli, E.1
Thommesen, L.2
Yadetie, F.3
Langaas, M.4
Kusnierczyk, W.5
Falkmer, U.6
Sandvik, A.K.7
Laegreid, A.8
-
38
-
-
0035863927
-
Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones
-
29671 11139630 10.1093/nar/29.2.582
-
Halgren RG Fielden MR Fong CJ Zacharewski TR Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones Nucleic Acids Res 2001, 29(2):582-588 29671 11139630 10.1093/nar/29.2.582
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.2
, pp. 582-588
-
-
Halgren, R.G.1
Fielden, M.R.2
Fong, C.J.3
Zacharewski, T.R.4
-
39
-
-
37249054682
-
-
The Norwegian Microarray Consortium
-
The Norwegian Microarray Consortium http://www.microarray.no/
-
-
-
-
40
-
-
2442704146
-
Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction
-
356910 15018648 10.1186/1471-2164-5-10
-
Lyng H Badiee A Svendsrud DH Hovig E Myklebost O Stokke T Profound influence of microarray scanner characteristics on gene expression ratios: Analysis and procedure for correction BMC Genomics 2004, 5(1):10 356910 15018648 10.1186/1471-2164-5-10
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 10
-
-
Lyng, H.1
Badiee, A.2
Svendsrud, D.H.3
Hovig, E.4
Myklebost, O.5
Stokke, T.6
-
41
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
100354 11842121 10.1093/nar/30.4.e15
-
Yang YH Dudoit S Luu P Lin DM Peng V Ngai J Speed TP Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation Nucl Acids Res 2002, 30(4):e15 100354 11842121 10.1093/nar/30.4.e15
-
(2002)
Nucl Acids Res
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
42
-
-
37249007417
-
-
Finnish DNA Microarray Centre
-
Finnish DNA Microarray Centre http://microarrays.btk.fi/
-
-
-
-
43
-
-
0001677717
-
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
-
Benjamini Y Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing Journal of the Royal Statistical Society 1995, 57(1):289
-
(1995)
Journal of the Royal Statistical Society
, vol.57
, Issue.1
, pp. 289
-
-
Benjamini, Y.1
-
44
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
10.1038/ng1201-365 11726920
-
Brazma A Hingamp P Quackenbush J Sherlock G Spellman P Stoeckert C Aach J Ansorge W Ball CA Causton HC Gaasterland T Glenisson P Holstege FC Kim IF Markowitz V Matese JC Parkinson H Robinson A Sarkans U Schulze-Kremer S Stewart J Taylor R Vilo J Vingron M Minimum information about a microarray experiment (MIAME)-toward standards for microarray data Nat Genet 2001, 29(4):365-371 10.1038/ng1201-365 11726920
-
(2001)
Nat Genet
, vol.29
, Issue.4
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.13
Kim, I.F.14
Markowitz, V.15
Matese, J.C.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
45
-
-
13444249955
-
ArrayExpress - A public repository for microarray gene expression data at the EBI
-
(Database issue) 540010 15608260 10.1093/nar/gki056
-
Parkinson H Sarkans U Shojatalab M Abeygunawardena N Contrino S Coulson R Farne A Lara GG Holloway E Kapushesky M Lilja P Mukherjee G Oezcimen A Rayner T Rocca-Serra P Sharma A Sansone S Brazma A ArrayExpress - a public repository for microarray gene expression data at the EBI Nucleic Acids Res 2005, 33 (Database issue):D553-5 540010 15608260 10.1093/nar/ gki056
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Parkinson, H.1
Sarkans, U.2
Shojatalab, M.3
Abeygunawardena, N.4
Contrino, S.5
Coulson, R.6
Farne, A.7
Lara, G.G.8
Holloway, E.9
Kapushesky, M.10
Lilja, P.11
Mukherjee, G.12
Oezcimen, A.13
Rayner, T.14
Rocca-Serra, P.15
Sharma, A.16
Sansone, S.17
Brazma, A.18
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