DNA sequence variation and the recombinational landscape in Drosophila pseudoobscura: A study of the second chromosome

Genetics

Volumn 153, Issue 2, 1999, Pages 859-869

  Hamblin, Martha T ^a,b   Aquadro, Charles F ^a  

^a Department of Population Medicine and Diagnostic Sciences   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MYOSIN LIGHT CHAIN; RHODOPSIN; RIBOSOME PROTEIN; TROPOMYOSIN; XANTHINE DEHYDROGENASE;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CENTROMERE; CONTROLLED STUDY; DNA POLYMORPHISM; DNA RECOMBINATION; DNA SEQUENCE; DROSOPHILA; GENE MAPPING; GENE MUTATION; GENETIC VARIABILITY; IN SITU HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SINGLE STRAND CONFORMATION POLYMORPHISM;

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; CROSSES, GENETIC; DNA; DROSOPHILA; DROSOPHILA MELANOGASTER; FEMALE; GENETIC MARKERS; MALE; RECOMBINATION, GENETIC; RESTRICTION MAPPING; VARIATION (GENETICS);

ANIMALIA; DROSOPHILA MELANOGASTER; DROSOPHILA PSEUDOOBSCURA; MELANOGASTER;

EID: 0032862461     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (58)

1. AOUADE, M., N. MIYASIUTA and G. H. LANCLKV, 1992 Polymorphism and divergence in the AIst26A male accessory gland region in Drosophila. Genetics 132: 355-302.
2. ANDKRSON, W., 1990 Linkage map of the fruit fly Drosophila pseudoobsaira, pp. 3.188-3.189 in Genetic Maps, edited by S. J. O'BuiKN. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
3. AQUADRO, C. F., 1993 Molecular population genetics of Drosophila, pp. 222-266 in Molecular Approaches to Fundamental and Applied Entomology, edited byj. CUKKsmyrrand MJ. WIHTTKN. Springer-Verlag, New York.
4. AQUADRO, C. F., D. J. BKOUV and E. C. KINDAIIL, 1994 Selection, recombination, and DN'A polymorpliism in Drosoplnla, pp. 46-56 in Non-neutral Evolution: Theories and Molecular Data, edited by B. GOLDING. Chapman and Hall, New York.
5. ARIS-BROSOU, S. and L. EXCOKFIER, 1996 The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Mol. Biol. Evol. 13: 494-504.
6. ASHBURNER, M., 1989 Drosophila: A laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
7. BEGUN, D. J. and C. F. AQUADRO, 1992 Levels of naturally occurring DNA polymorphism correlate with recombination rates in Z). melanogasler. Nature 356: 519-520.
8. BROOKFIKLD, J. F. Y., E. MONTGOMERY and C. H. LANGLEY, 1984 Apparent absence of transposable elements related to the P elements of D. melanogasler in other species of Drosophila. Nature 310: 330-332.
9. CARULLI, J. P. and D. L. HARTI, 1992 Variable rates of evolution among Drosophila opsin genes. Genetics 132: 193-204.
10. CHARIKSWORTH, B., 1996 Background selection and patterns of genetic diversity in Drosophila melanogasler. Genet. Res. 68: 131-149.
11. CHARIKSWORTH, B., M. T. MORGAN and D. CHARLKSWORTII, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
12. DOHZHANSKY, Tu. and C. EPLING, 1944 Contributions to the Genetics, Taxonomy, and Ecology of Drosophila pseudoobscura and Its Relatives. Pub. 554, Carnegie Institute, Washington, DC.
13. FRV, J. D., P. D. KEIGIITLEY, S. L. HEINSOIIN and S. V. NUIIDIN, 1999 New estimates of the rates and effects of mildly deleterious mutation in Drosophila melanogasler. Proc. Natl. Acad. Sci. USA 96: 574-579.
14. Fu, Y.-Y. and W.-H. Li, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
15. GLOOR, G. B., C. R. PRESTON, D. MJoiiNSON-Sciu.iTZ, N. A. NASSIF, R.W.Pnn.i.isda/., 1993 Type Irepressors of P element mobility. Genetics 135: 81-95.
16. HAMBLIN, MT., andC. F. AQUADRO, 1996 High nucleotide variation in a region of low recombination in Drosophila simnlans is consistent with the background selection model. Mol. Biol. Evol. 13: 1133-1140.
17. HAMBLIN, M. T. and C. F. AQUADRO, 1997 Contrasting patterns of nucleotide sequence variation at the glucose dehydrogenase (Gld) locus in different populations of Drosophila melanogaster. Genetics 145: 1053-1062.
18. HASSON, E., L N. WANG, L. W. ZENG, M. KREITMAN and W. F. EANES, 1998 Nucleotide variation in the triosephosphatc isomerase (Tp!) locus of Drosophila melanogasterlmA Drosophila simulons. Mol. Biol. Evol. 15: 756-769.
19. HIM., W. G. and A. ROBKRTSON, 1966 The effect of linkage on limits to artificial selection. Genet. Res. 8: 269-294.
20. HUDSON, R. R. and N. L. KAMAN, 1995 Deleterious background selection with recombination. Genetics 141: 1605-1617.
21. HUDSON, R. R., M. KREITMAN and M. AGUADE, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
22. HUDSON, R. R., K. BAILEY, D. SKARECKY, J. KWIATOWSKI and F. J. AYALA, 1994 Evidence for positive selection in the Superoxide dismutase (Sods) region of Drosophila melanogaster. Genetics 136: 1329-1340.
23. KAPLAN, N., R. R. HUDSON and C. H. LANGLKY, 1989 The "hitchhiking effect" revisited. Genetics 116: 153-159.
24. KEIGIITLEY, P. D., 1996 Nature of deleterious mutation load in Drosophila. Genetics 144: 1993-1999.
25. KINDAIIL, E. C., 1994 Recombination and DNA polymorphism on the third chromosome of Drosophila melanogaster. PhD. Thesis, Cornell University, Ithaca, NY.
26. KREITMAN, M. and R. R. HUDSON, 1991 Inferring the evolutionary histories of the Adh and Adh-dup loci in Drosophila melanogasler from patterns of polymorphism and divergence. Genetics 127: 565-582.
27. LACHAISK, D., M.-L. CARIOU, J. R. DAVID, F. LKMKUNIER, L. TSACAS etal., 1988 Historical biogeography of the Drosophila melanogaster species subgroup. Evol. Biol. 22: 159-255.
28. LANDER, E. S., P. GREEN, J. ABRAIIAMSON, A. BARLOW, M. J. DALY el at., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
29. LEICHT, B. G., S. V. MUSE, M. HANCZYC and A. G. CLARK, 1995 Constraints on intron evolution in the gene encoding the Myosin Alkali Light Chain in Drosophila. Genetics 139: 299-308.
30. LKVINK, R. P. and E. E. LEVINE, 1954 The gcnotypic control of crossing over in Drosophila pseudoobsnira. Genetics 39: 677.
31. LKVINK, R. P. and E. E. LEVINE, 1955 Variable crossing over arising in different strains of Drosophila pseudoobscura. Genetics 40: 399-405.
32. LIM. J. K., 1993 In situ hybridization with biotinylated DNA. Dros. Inf. Sen-. 72: 73-76.
33. LINIJSLKY, D. L. and G. G. ZIMM, 1992 The Genome of Drosophila melanogaster. Academic Press, San Diego.
34. MORIYAMA, E. N., anclj. R. POWELI, 1996 Intraspccific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13: 261-277.
35. NEI, M., 1987 Molecular Evolutionary Genetics. Columbia University Press, New York.
36. NOOK, M. A. F., M. D. Sciiuoand C. F. AQUADRO, 1999 Microsatellite variation in populations of Drosophila pseudoobscura and Drosophila persimilis. Genet. Res. (in press).
37. ORITA, M., Y. SUZUKI, T. SFKIYA and K. HAYASIII, 1989 Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5: 874-879.
38. PLOUGH, H. H., 1917 The effect of temperature on crossing over in Drosophila. J. Exp. Zool. 24: 147-209.
39. POWELL, J. R., 1997 Progress and Prospects in Evolutionary Biology. Oxford University Press, New York.
40. PRITCIIARD, J. K. and S. W. SCIIAEFFER, 1997 Polymorphism and divergence at a Drosophila pseudogene locus. Genetics 147: 199-207.
41. RILEY, M. A., M. E. HALLAS and R. C. LFWONTIN, 1989 Distinguishing the forces controlling genetic variation at the Xdh locus in Drosophila pseudoobscura. Genetics 123: 359-369.
42. SCIIAEFFER, S. W. and E. L. MILLEK, 1992a Molecular population genetics of an electrophoretically monomorphic protein in the alcohol dehydrogcnasc region of Drosophila pseudoobscura. Genetics 132: 163-178.
43. SCIIAEFFER, S. '. and E. L. MILLER, 1992b Estimates of gene (low in Drosophila pseudoobsrura determined from nuclcotidc sequence analysis of the alcohol dehydrogenase region. Genetics 132:471480.
44. SCIIAEFFER, S. W., C. F. AQUADRO and W. V. ANDKRSOX, 1987 Restriction-map variation in the alcohol dehydrogcnasc region of Drosophila pseudoobsrura. Mol. Biol. Evol. 4: 254-265.
45. SCHULTZ, J. and H. REUFIELU, 1951 Interchromosomal effects on crossing over in Drosophila. CSH Symp. Quant. Biol. 16:175-197.
46. SFGARRA, C., G. Rmo and M. AGUADF., 1996 Differentiation of Muller's chromosomal elements D and in the Obscura group of Drosophila. Genetics 144: 139-146.
47. SLATKIN, M., 1994 Gene flow and population structure, pp. 3-17 in Ecological Genetics, edited by L. A. RUM., Princeton University Press, Princeton, NJ.
48. STOCKFR, A. J. and C. D. KASTRITSIS, 1972 Developmental studies in Drosophila. IIL The puffing patterns of the salivary gland chromosomes of/), pseudoobsairn. Chromosoma 37: 139-176.
49. STURTFVANT, A. H. and E. NOVITSKI, 1941 The homologies of the chromosome elements in the genus Drosophila. Genetics 26: 517-541.
50. TAJIMA, F., 1989a Statistical method for testing the neutral mutation hypothesis by DN'A polymorphism. Genetics 123: 585-595.
51. TAJIMA, F., 1989b The effect of change in population size on DNA polymorphism. Genetics 123: 597-602.
52. TAYLOR, C. E., 1986 Habitat choice by Drosophila pseudoobscura; the roles of genotype and of experience. Bchav. Genet. 16: 271-280.
53. TRUE, J. R., J. M. MERCER and C. C. LAURIF., 1996 Differences in crossover frequency and distribution among three sibling species of Drosophila. Genetics 142: 507-523.
54. WALTIIOUR, C. S. and S. W. SCIIAEFFER, 1994 Molecular population genetics of sex determination genes: the transformer gene of Drosophila melanogaster. Genetics 136: 1367-1372.
55. WANG, R. L., andj. HEY, 1996 The speciation history of Drosophila pseudoobscura and close relatives: inferences from DNA sequence variation at the period locus. Genetics 144: 1113-1126.
56. WANG, R. L., J. WAKELEY and J. HEY, 1997 Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives. Genetics 147: 1091-1106.
57. WATTERSON, G. A., 1975 On the number of segregating sites in gcnetical models without recombination. Theor. Popul. Biol. 7: 256-276.
58. WIEIIE, T. H. E. and W. STEPHAN, 1993 Analysis of a genetic hitchhiking model and its application to DNA polymorphism data. Mol. Biol. Evol. 10: 842-854.