Species diversity of uncultured and cultured populations of soil and marine ammonia oxidizing bacteria

Microbial Ecology

Volumn 42, Issue 3, 2001, Pages 228-237

  Smith, Z ^a   McCaig, A E ^a   Stephen, J R ^a   Embley, T M ^b   Prosser, J I ^a  

^a UNIVERSITY OF ABERDEEN   (United Kingdom)

^b DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; MARINE SEDIMENT; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS; SOIL MICROORGANISM; SPECIES DIVERSITY;

BACTERIA (MICROORGANISMS); NITROSOMONADALES; NITROSOMONAS; NITROSOSPIRA; NITROSPIRA; PROKARYOTA;

EID: 0035211790     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-001-0016-x     Document Type: Article

References (38)

1. RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: A phylogenetic approach
2. Separation and purification of bacteria from soil
3. Molecular microbial diversity of an agricultural soil in Wisconsin
4. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
5. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
6. Direct and biological analysis of ammonia oxidising bacteria populations in cultivated soil plots treated with swine manure
7. The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences
8. Detection of novel marine methanotrophs using phylogenetic and functional gene probes after methane enrichment
9. Evolution of protein molecules
10. Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in compost and composted materials
11. Diverse uncultivated bacterial groups from soils of the arid Southwestern United States that are present in many geographic regions
12. Occurrence of novel groups of the domain bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
13. Adsorption of DNA to sand and variable degradation rates of adsorbed DNA
14. Selective and diagnostic medium for ammonia oxidising bacteria
15. The ribosomal database project
16. Molecular analysis of enrichment cultures of marine ammonia oxidisers
17. Nitrogen cycling and community structure of β-subgroup ammonia oxidising bacteria within polluted, marine fish-farm sediments
18. Effects of agronomic treatments on the structure and function of ammonia oxidising communities
19. Quantitative analysis of ammonia oxidising bacteria using competitive PCR
20. Phylogenetic differences between particle-associated and planktonic β-proteobacteria ammonia oxidising bacteria in the North Western Mediterranean Sea
21. Bias in template-to-product ratios in multitemplate PCR
22. Phylogenetic diversity within the genus Nitrosomonas
23. The effect of nitrapyrin and chloropicolinic acid on ammonium oxidation by Nitrosomonas europaea
24. Comparative analysis of gene sequences encoding ammonia monooxygenase of Nitrosospira sp. AHB1 and Nitrosolobus multiformis C-71
25. The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
26. The neighbor-joining method: A new method for reconstructing phylogenetic trees
27. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
28. A comparison of direct and plate counting techniques for the quantitative estimation of soil microorganisms
29. Analysis of β-subgroup ammonia oxidiser populations in soil by DGGE analysis and hierarchical phylogenetic probing
30. Molecular diversity of soil and marine 16S rDNA sequences related to β-subgroup ammonia oxidising bacteria
31. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
32. High diversity in DNA of soil bacteria
33. Biochemical analysis of biomass, community structure, nutritional status and metabolic activity of the microbial community in soil
34. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material
35. Rapid identification of microbes from clinical and environmental matrices by mass spectrometry
36. Analysis of microorganisms in terms of quantity and activity in natural environments