-
1
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1990;1919-1925.
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
3
-
-
0030867762
-
Phylogenetic characterization of bacteria in the subsurface microbial culture collection
-
Balkwill D.L., Reeves R.H., Drake G.R., Reeves J.Y., Crocker F.H., King M.B., Boone D.R. Phylogenetic characterization of bacteria in the subsurface microbial culture collection. FEMS Microbiol. Rev. 20:1997;201-216.
-
(1997)
FEMS Microbiol. Rev.
, vol.20
, pp. 201-216
-
-
Balkwill, D.L.1
Reeves, R.H.2
Drake, G.R.3
Reeves, J.Y.4
Crocker, F.H.5
King, M.B.6
Boone, D.R.7
-
4
-
-
2642590009
-
Higher sensitivity of denaturing gradient gel electrophoresis than sequencing in the detection of mutations in DNA from tumor samples
-
Carcia-Delgado M., Gonzalez-Navarro C.J., Napal M.C Baldonado C., Vizmanos J.L., Gullon A. Higher sensitivity of denaturing gradient gel electrophoresis than sequencing in the detection of mutations in DNA from tumor samples. Biotechniques. 24:1998;72-76.
-
(1998)
Biotechniques
, vol.24
, pp. 72-76
-
-
Carcia-Delgado, M.1
Gonzalez-Navarro, C.J.2
Napal M.c Baldonado, C.3
Vizmanos, J.L.4
Gullon, A.5
-
5
-
-
0031149569
-
Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
-
Chandler D.P., Fredrickson J.K., Brockman F.J. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol. Ecol. 6:1997;475-482.
-
(1997)
Mol. Ecol.
, vol.6
, pp. 475-482
-
-
Chandler, D.P.1
Fredrickson, J.K.2
Brockman, F.J.3
-
6
-
-
0032432372
-
Redefining relativity: Quantitative PCR at low template concentrations for industrial and environmental microbiology
-
Chandler D.P. Redefining relativity: quantitative PCR at low template concentrations for industrial and environmental microbiology. J. Ind. Microbiol. Biotechnol. 21:1998;128-140.
-
(1998)
J. Ind. Microbiol. Biotechnol.
, vol.21
, pp. 128-140
-
-
Chandler, D.P.1
-
8
-
-
0027086910
-
A novel procedure for quantitative polymerase chain reaction by coamplification of competitive templates
-
Diviacco S., Norio P., Zentilin L., Menzo S., Clementi M., Biamonti G., Riva S., Falaschi A., Giacca M. A novel procedure for quantitative polymerase chain reaction by coamplification of competitive templates. Gene. 122:1992;313-320.
-
(1992)
Gene
, vol.122
, pp. 313-320
-
-
Diviacco, S.1
Norio, P.2
Zentilin, L.3
Menzo, S.4
Clementi, M.5
Biamonti, G.6
Riva, S.7
Falaschi, A.8
Giacca, M.9
-
9
-
-
0031791939
-
Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns
-
Duineveld B.M., Rosado A.S., van Elsas J.D., van Veen J.A. Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns. Appl. Environ. Microbiol. 64:1998;4950-4957.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4950-4957
-
-
Duineveld, B.M.1
Rosado, A.S.2
Van Elsas, J.D.3
Van Veen, J.A.4
-
10
-
-
0029032318
-
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
-
Farrelly V., Rainey F.A., Stackebrandt E. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:1995;2798-2801.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stackebrandt, E.3
-
11
-
-
0031732597
-
Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints
-
Felske A., Akkermans A.D., De Vos W.M. Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl. Environ. Microbiol. 64:1998;4581-4587.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4581-4587
-
-
Felske, A.1
Akkermans, A.D.2
De Vos, W.M.3
-
12
-
-
0033135928
-
Reviewing the DA001-files: A 16S rRNA chase on suspect #X99967, a Bacillus and Dutch underground activist
-
Felske A. Reviewing the DA001-files: a 16S rRNA chase on suspect #X99967, a Bacillus and Dutch underground activist. J. Microbiol. Methods. 36:1999;77-93.
-
(1999)
J. Microbiol. Methods
, vol.36
, pp. 77-93
-
-
Felske, A.1
-
13
-
-
0031662785
-
Two intracellular symbiotic bacteria from the mulberry psyllid Anomoneura mori (Insecta Homoptera)
-
Fukatsu T., Nikoh N. Two intracellular symbiotic bacteria from the mulberry psyllid Anomoneura mori (Insecta Homoptera). Appl. Environ. Microbiol. 64:1998;3599-3606.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3599-3606
-
-
Fukatsu, T.1
Nikoh, N.2
-
14
-
-
0031842162
-
Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region
-
Hansen M.C., Tolker-Nielsen T., Givskov M., Molin S. Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiol. Ecol. 26:1998;141-149.
-
(1998)
FEMS Microbiol. Ecol.
, vol.26
, pp. 141-149
-
-
Hansen, M.C.1
Tolker-Nielsen, T.2
Givskov, M.3
Molin, S.4
-
15
-
-
0030739128
-
Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
-
Heuer H., Krsek M., Baker P., Smalla K., Wellington E.M. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63:1997;3233-3241.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3233-3241
-
-
Heuer, H.1
Krsek, M.2
Baker, P.3
Smalla, K.4
Wellington, E.M.5
-
16
-
-
0030901922
-
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes using denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S rDNA fragments
-
Kowalchuk G.A., Stephen J.R., De Boer W., Prosser J.I., Embley T.M., Woldendorp J.W. Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes using denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S rDNA fragments. Appl. Environ. Microbiol. 63:1997;1489-1497.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1489-1497
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
De Boer, W.3
Prosser, J.I.4
Embley, T.M.5
Woldendorp, J.W.6
-
17
-
-
0030754258
-
Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18s rDNA
-
Kowalchuk G.A., Gerards S., Woldendorp J.W. Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18s rDNA. Appl. Environ. Microbiol. 63:1997;3858-3865.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3858-3865
-
-
Kowalchuk, G.A.1
Gerards, S.2
Woldendorp, J.W.3
-
18
-
-
0008048504
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
-
Lane D.J., Pace B., Olsen G.J., Stahl D.A., Sogin M.L., Pace N.R. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Natl. Acad. Sci. USA. 82:1985;6955-6959.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 6955-6959
-
-
Lane, D.J.1
Pace, B.2
Olsen, G.J.3
Stahl, D.A.4
Sogin, M.L.5
Pace, N.R.6
-
19
-
-
0023504650
-
Adsorption of DNA to sand and variable degradation rates of adsorbed DNA
-
Lorenz M.G., Wackernagel W. Adsorption of DNA to sand and variable degradation rates of adsorbed DNA. Appl. Environ. Microbiol. 53:1987;2948-2952.
-
(1987)
Appl. Environ. Microbiol.
, vol.53
, pp. 2948-2952
-
-
Lorenz, M.G.1
Wackernagel, W.2
-
20
-
-
0032918722
-
A new version of the RDP
-
Maidak B.L., Cole J.R., Parker C.T. Jr., Garrity G.M., Larsen N., Li B., Lilburn T.G., McCaughey M.J., Olsen G.J., Overbeek R., Pramanik S., Schmidt T.M., Tiedje J.M., Woese C.R. A new version of the RDP. Nucleic Acids Res. 27:1999;171-173.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 171-173
-
-
Maidak, B.L.1
Cole, J.R.2
Parker C.T., Jr.3
Garrity, G.M.4
Larsen, N.5
Li, B.6
Lilburn, T.G.7
McCaughey, M.J.8
Olsen, G.J.9
Overbeek, R.10
Pramanik, S.11
Schmidt, T.M.12
Tiedje, J.M.13
Woese, C.R.14
-
21
-
-
0031745941
-
Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA
-
(Published erratum appears in: Appl. Environ. Microbiol. 1998. 64, 2333).
-
Marchesi J.R., Sato T., Weightman A.J., Martin T.A., Fry J.C., Hiom S.J., Dymock D., Wade W.G. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl. Environ. Microbiol. 64:1998;795-799. (Published erratum appears in: Appl. Environ. Microbiol. 1998. 64, 2333).
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 795-799
-
-
Marchesi, J.R.1
Sato, T.2
Weightman, A.J.3
Martin, T.A.4
Fry, J.C.5
Hiom, S.J.6
Dymock, D.7
Wade, W.G.8
-
22
-
-
0032954211
-
Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments
-
McCaig A.E., Phillips C.J., Stephen J.R., Kowalchuk G.A., Harvey S.M., Herbert R.A., Embley T.M., Prosser J.I. Nitrogen cycling and community structure of proteobacterial β-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments. Appl. Environ. Microbiol. 65:1999;213-220.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 213-220
-
-
McCaig, A.E.1
Phillips, C.J.2
Stephen, J.R.3
Kowalchuk, G.A.4
Harvey, S.M.5
Herbert, R.A.6
Embley, T.M.7
Prosser, J.I.8
-
23
-
-
0032772104
-
Microbial population changes during bioremediation of an experimental oil spill
-
Macnaughton S.J., Stephen J.R., Venosa A.D., Davis G.A., Chang Y.-J., White D.C. Microbial population changes during bioremediation of an experimental oil spill. Appl. Environ. Microbiol. 65:1999;3566-3574.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3566-3574
-
-
Macnaughton, S.J.1
Stephen, J.R.2
Venosa, A.D.3
Davis, G.A.4
Chang, Y.-J.5
White, D.C.6
-
24
-
-
0027460328
-
Profiling of microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA
-
Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:1993;695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
25
-
-
0031959006
-
Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
-
Muyzer G., Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek. 73:1998;127-141.
-
(1998)
Antonie Van Leeuwenhoek
, vol.73
, pp. 127-141
-
-
Muyzer, G.1
Smalla, K.2
-
26
-
-
0031435214
-
Differentiation and quantification of the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis using a PCR assay
-
Nicholson P., Rezanoor H.N., Simpson D.R., Joyce D. Differentiation and quantification of the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis using a PCR assay. Plant Pathol. 46:1997;842-856.
-
(1997)
Plant Pathol.
, vol.46
, pp. 842-856
-
-
Nicholson, P.1
Rezanoor, H.N.2
Simpson, D.R.3
Joyce, D.4
-
27
-
-
0019503845
-
Genetic mapping of chromosomal determinants for the production of exopolysaccharide alginate in a Pseudomonas aeruginosa cystic fibrosis isolate
-
Ohman D.E., Chakrabarty A.M. Genetic mapping of chromosomal determinants for the production of exopolysaccharide alginate in a Pseudomonas aeruginosa cystic fibrosis isolate. Infect. Immun. 33:1981;124-148.
-
(1981)
Infect. Immun.
, vol.33
, pp. 124-148
-
-
Ohman, D.E.1
Chakrabarty, A.M.2
-
28
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz M.F., Cavanaugh C.M. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64:1998;3724-3730.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
30
-
-
0001548496
-
A comparison of direct and plate counting techniques for the quantitative estimation of soil microorganisms
-
Skinner F.A., Jones P.C.T., Mollison J.E. A comparison of direct and plate counting techniques for the quantitative estimation of soil microorganisms. J. Gen. Microbiol. 6:1952;261-271.
-
(1952)
J. Gen. Microbiol.
, vol.6
, pp. 261-271
-
-
Skinner, F.A.1
Jones, P.C.T.2
Mollison, J.E.3
-
31
-
-
0000023099
-
Attachment of a 4-base pair G+C rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes
-
Sheffield V.C., Cox D.R., Lerman L.S., Myers R.M. Attachment of a 4-base pair G+C rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc. Natl. Acad. Sci. USA. 86:1989;232-236.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 232-236
-
-
Sheffield, V.C.1
Cox, D.R.2
Lerman, L.S.3
Myers, R.M.4
-
32
-
-
0033108163
-
Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present at very low frequency in activated sludge
-
Snaidr J., Fuchs B., Wallner G., Wagner M., Schleifer K.-H., Amann R. Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present at very low frequency in activated sludge. Environ. Microbiol. 1:1999;125-135.
-
(1999)
Environ. Microbiol.
, vol.1
, pp. 125-135
-
-
Snaidr, J.1
Fuchs, B.2
Wallner, G.3
Wagner, M.4
Schleifer, K.-H.5
Amann, R.6
-
33
-
-
0031904158
-
Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
-
Stephen J.R., Kowalchuk G.A., Bruns M.-A.V., McCaig A.E., Phillips C.J., Embley T.M., Prosser J.I. Analysis of β-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl. Environ. Microbiol. 64:1998;2958-2965.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2958-2965
-
-
Stephen, J.R.1
Kowalchuk, G.A.2
Bruns, M.-A.V.3
McCaig, A.E.4
Phillips, C.J.5
Embley, T.M.6
Prosser, J.I.7
-
34
-
-
0032944574
-
Fate of a metal-resistant inoculum in contaminated and pristine soils assessed by denaturing gradient gel electrophoresis
-
Stephen J.R., Chang Y.-J., Macnaughton S.J., Hicks C.L., Leung K.T., Flemming C.A., White D.C. Fate of a metal-resistant inoculum in contaminated and pristine soils assessed by denaturing gradient gel electrophoresis. Environ. Toxicol. Chem. 18:1999;1118-1123.
-
(1999)
Environ. Toxicol. Chem.
, vol.18
, pp. 1118-1123
-
-
Stephen, J.R.1
Chang, Y.-J.2
Macnaughton, S.J.3
Hicks, C.L.4
Leung, K.T.5
Flemming, C.A.6
White, D.C.7
-
35
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki M.T., Giovannoni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:1996;625-630.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
36
-
-
0032219204
-
Novel techniques for analysing microbial diversity in natural and perturbed environments
-
Torsvik V., Daae F.L., Sandaa R.A., Ovreas L. Novel techniques for analysing microbial diversity in natural and perturbed environments. J. Biotechnol. 64:1998;53-62.
-
(1998)
J. Biotechnol.
, vol.64
, pp. 53-62
-
-
Torsvik, V.1
Daae, F.L.2
Sandaa, R.A.3
Ovreas, L.4
-
37
-
-
12044254346
-
Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift
-
Wagner A., Blackstone N., Cartwright P., Dick M., Misof B., Snow P., Wagner G.P., Bartels J., Murtha M., Pendleton J. Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift. Syst. Biol. 43:1994;250-261.
-
(1994)
Syst. Biol.
, vol.43
, pp. 250-261
-
-
Wagner, A.1
Blackstone, N.2
Cartwright, P.3
Dick, M.4
Misof, B.5
Snow, P.6
Wagner, G.P.7
Bartels, J.8
Murtha, M.9
Pendleton, J.10
-
38
-
-
0031734089
-
Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge
-
Watanabe K., Teramoto M., Futamata H., Harayama S. Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge. Appl. Environ. Microbiol. 64:1998;4396-4402.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4396-4402
-
-
Watanabe, K.1
Teramoto, M.2
Futamata, H.3
Harayama, S.4
-
39
-
-
0003128545
-
Clostridium
-
A.L. Sonenshein, J.A. Hoch, & R. Losick. Washington, DC: American Society for Microbiology
-
Young C.C., Cole S.T. Clostridium. Sonenshein A.L., Hoch J.A., Losick R. Bacillus subtilis and Other Gram-positive Organisms. 1993;35-52 American Society for Microbiology, Washington, DC.
-
(1993)
Bacillus Subtilis and Other Gram-positive Organisms
, pp. 35-52
-
-
Young, C.C.1
Cole, S.T.2
|