Phylogeny and historical biogeography of the cave-adapted shrimp genus Typhlatya (Atyidae) in the Caribbean Sea and western Atlantic

Journal of Biogeography

Volumn 35, Issue 1, 2008, Pages 65-75

  Hunter, Rebecca L ^a,b   Webb, Michael Scott ^b   Iliffe, Thomas M ^b,c   Bremer, Jaime R Alvarado ^b,c  

^a AUBURN UNIVERSITY   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

^c TEXAS A AND M UNIVERSITY AT GALVESTON   (United States)

Author keywords

16S rDNA; Anchialine; Bermuda; Cave adapted; COI; Crustacea; Cytochrome b; mtDNA; Shrimp biogeography; Typhlatya

Indexed keywords

BIOGEOGRAPHY; COLONIZATION; CRUSTACEAN; DISPERSAL; GENE FLOW; MITOCHONDRIAL DNA; PHYLOGENY; POPULATION GENETICS;

ATLANTIC ISLANDS; ATLANTIC OCEAN; BERMUDA; CAICOS ISLANDS; CARIBBEAN ISLANDS; TURKS AND CAICOS ISLANDS; YUCATAN PENINSULA;

ATYIDAE (CRUSTACEANS); CRUSTACEA; DECAPODA (CRUSTACEA); TYPHLATYA; TYPHLATYA MITCHELLI;

EID: 37149031262     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2007.01767.x     Document Type: Article

References (62)

1. Alvarez, F., Iliffe, T.M. Villalobos, J.L. (2005) New species of the genus Typhlatya (Decapoda: Atyidae) from anchialine caves in Mexico, the Bahamas and Honduras. Journal of Crustacean Biology, 25, 81 94.
2. Baldwin, J.D., Bass, A.L., Bowen, B.W. Clark, W.C. (1998) Molecular phylogeny and biogeography of the marine shrimp Penaeus. Molecular Phylogenetics and Evolution, 10, 399 407.
3. Brower, A.V.Z. (1994) Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Sciences USA, 91, 6491 6495.
4. Carew, J.L. Mylroie, J.E. (1995) Geology of the Bahamas. Bahamas Journal of Science, 6, 2 16.
5. Chenoweth, S.F. Hughes, J.M. (2003) Speciation and phylogeography in Caridina indistincta, a complex of freshwater shrimps from Australian heathland streams. Marine and Freshwater Research, 54, 807 812.
6. Clement, M., Posada, D. Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1660.
7. Cobolli Sbordoni, M., Mattoccia, M., La Rosa, G., De Matthaeis, E. Sbordoni, V. (1990) Secondary sympatric occurrence of sibling species of subterranean shrimps in the karst. International Journal of Speleology, 19, 9 27.
8. Couret, C.L. Wong, D.C.L. (1978) Larval development of Halocaridina rubra Holthius (Decapoda, Atyidae). Crustaceana, 34, 301 309.
9. Creaser, E.P. (1936) Crustaceans from Yucatan. The cenotes of Yucatan. A zoological and hydrographic survey (ed. by S. Pearse, E.P. Creaser F.G. Hall Vol. 457, pp. 117 132. Publications of the Carnegie Institution, Washington, DC, USA.
10. Danielopol, D.L. (1980) An essay to assess the age of the freshwater interstitial ostracods of Europe. Bijdragen tot de Dierkunde, 50, 243 291.
11. Daniels, S.R., Stewart, B.A., Gouws, G., Cunningham, M. Matthee, C.A. (2002) Phylogenetic relationships of the southern African freshwater crab fauna (Decapoda: Potamonautidae: Potamonautes) derived from multiple data sets reveal biogeographic patterning. Molecular Phylogenetics and Evolution, 25, 511 523.
12. Farris, J.S., Kallersjo, M., Kluge, A.G. Bult, C. (1995) Constructing a significance test for incongruence. Systematic Biology, 44, 570 572.
13. Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783 791.
14. Gregor, V.A. (1981) Karst and caves in the Turks and Caicos Islands, B.W.I. Proceedings of the Eighth International Congress of Speleology, pp. 805 807. Bowling Green, KY.
15. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95 98.
16. Harrison, J.S. (2001) Phylogeny, biogeography, and speciation in the genus Austinixa and related genera (Crustacea: Brachyura: Pinnotheridae). PhD thesis, Texas A&M University, College Station, TX, USA.
17. Hart, C.W., Jr., Manning, R.B. Iliffe, T.M. (1985) The fauna of Atlantic marine caves: evidence of dispersal by sea floor spreading while maintaining ties to deep waters. Proceedings of the Biological Society of Washington, 98, 288 292.
18. Hebert, P.D.N., Stoeckle, M.Y., Zemlak, T.S. Francis, C.M. (2004) Identification of birds through DNA barcodes. PLoS Biology, 2, 1657 1663.
19. Huelsenbeck, J.P., Bull, J.J. Cunningham, C.W. (1996) Combining data in phylogenetic analysis. Trends in Ecology and Evolution, 11, 152 158.
20. Humphreys, W.H. (2000) Relict faunas and their derivation. Subterranean ecosystems (ed. by H. Wilkens, D.C. Culver W.F. Humphreys pp. 417 432. Elsevier, Amsterdam.
21. Hurwood, D.A. Hughes, J.M. (2001) Nested clade analysis of the freshwater shrimp, Caridina zebra (Decapoda, Atyidae), from north-eastern Australia. Molecular Ecology, 10, 113 125.
22. Hurwood, D.A., Hughes, J.M., Bunn, S.E. Cleary, C. (2003) Population structure in the freshwater shrimp (Paratya australiensis) inferred from allozymes and mitochondrial DNA. Heredity, 90, 64 70.
23. Iliffe, T.M. (1993) A review of submarine caves and cave biology of Bermuda. Boletín de la Sociedad Venezolana de Espeleología, 27, 39 45.
24. Iliffe, T.M. (2000) Anchialine cave ecology. Subterranean ecosystems (ed. by H. Wilkens, D.C. Culver W.F. Humphreys pp. 59 76. Elsevier, Amsterdam.
25. Iliffe, T.M. (2004) Anchialine caves, biodiversity. Encyclopedia of caves (ed. by D.C. Culver W.B. White pp. 24 30. Elsevier, Burlington, MA, USA.
26. Iliffe, T.M., Hart, C.W., Jr. Manning, R.B. (1983) Biogeography and the caves of Bermuda. Nature, 302, 141 142.
27. Iliffe, T.M., Wilkens, H., Parzefall, J. Williams, D. (1984) Marine lava cave fauna: composition, biogeography and origins. Science, 225, 309 311.
28. Kano, Y. Kase, T. (2004) Genetic exchange between anchialine cave populations by means of larval dispersal: the case of a new gastropod species Neritilia cavernicola. Zoologica Scripta, 33, 423 437.
29. Knowlton, N. Weigt, L.A. (1998) New dates and new rates for divergence across the Isthmus of Panama. Proceedings of the Royal Society B: Biological Sciences, 265, 2257 2263.
30. Knowlton, N., Weigt, L.A., Solórzano, L.A., Mills, D.K. Bermingham, E. (1993) Divergence in proteins, mitochondrial DNA, and reproductive compatibility across the Isthmus of Panama. Science, 260, 1629 1632.
31. Kumar, S., Tamura, K Nei, M. (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150 163.
32. Lee, C.E. (1999) Rapid and repeated invasions of fresh water by the copepod Eurytemora affinis. Evolution, 53, 1423 1434.
33. Maciolek, J.A. (1983) Distribution and biology of Indo-Pacific insular hypogeal shrimps. Bulletin of Marine Science, 33, 606 613.
34. Maddocks, R.F. (1991) Revision of the family Pontocyprididae (Ostracoda), with new anchialine species and genera from the Galapagos Islands. Zoological Journal of the Linnean Society of London, 103, 309 333.
35. Manning, R.B., Hart, C.W., Jr. Iliffe, T.M. (1986) Mesozoic relicts in marine caves of Bermuda. Stygologia, 2, 156 166.
36. McCarthy, C. (1996) chromas ver. 1.45. School of Health Science, Griffith University, Gold Coast Campus, Southport, Queensland, Australia.
37. Monniot, C. Monniot, F. (1983) Navigation or currents? The colonization of the Azores and Bermuda by ascidians (benthic tunicates) Proceedings of the Colloquium 'Man, Biogeographic Factor', 59, 53 58.
38. Mueller, R.L. (2006) Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis. Systematic Biology, 55, 289 300.
39. Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L. Grabowski, G. (1991) A simple fool's guide to PCR. University of Hawaii Press, Honolulu.
40. Posada, D. (2004) collapse ver. 1.2. A tool for collapsing sequences to haplotypes. http://darwin.uvigo.es.
41. Posada, D. Crandall, K.A. (1998) ModelTest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
42. Reddell, J.R. (1977) A preliminary survey of the caves of the Yucatán Peninsula. Association for Mexican Cave Studies Bulletin, 6, 215 296.
43. Rowe, M.P. (1998) An explanation of the geology of Bermuda. Bermuda Government, Bermuda.
44. Santos, S.R. (2006) Patterns of genetic connectivity among anchialine habitats: a case study of the endemic Hawaiian shrimp Halocaridina rubra on the island of Hawaii. Molecular Ecology, 15, 2699 2718.
45. Sanz, S. Platvoet, D. (1995) New perspectives on the evolution of the genus Typhlatya (Crustacea, Decapoda): first record of a cavernicolous atyid in the Iberian Peninsula, Typhlatya miravetensis n. sp. Contributions to Zoology, 65, 79 99.
46. Schubart, C.D., Diesel, R. Hedges, S.B. (1998) Rapid evolution to terrestrial life in Jamaican crabs. Nature, 393, 363 365.
47. Smart, P.L., Beddows, P.A., Coke, J., Doerr, S., Smith, S. Whitaker, F.F. (2006) Cave development on the Caribbean coast of the Yucatan Peninsula, Quintana Roo, Mexico. Perspectives on karst geomorphology, hydrology, and geochemistry - a tribute volume to Derek C. Ford and William B. White (ed. by R.S. Harmon C. Wicks pp. 105 128. Special Paper 404. Geological Society of America, Boulder, CO, USA.
48. Smith, M.J. Williams, W.D. (1981) The occurrence of Antecaridina lauensis (Edmondson) (Crustacea, Decapoda, Atyidae) in the Solomon Islands: an intriguing biogeographical problem. Hydrobiologia, 85, 49 58.
49. Sterrer, W. (1973) Plate tectonics as a mechanism for the dispersal and speciation in interstitial sand fauna. Netherlands Journal of Sea Research, 7, 200 222.
50. Stock, J.H. (1977) The taxonomy and zoogeography of the hadziid Amphipoda, with emphasis on the West Indian taxa. Studies on the Fauna of Curaçao and Other Caribbean Islands, 55, 1 130.
51. Stock, J.H. (1980) Regression model evolution as exemplified by the genus Pseudoniphargus (Amphipoda). Bijdragen tot de Dierkunde, 50, 105 144.
52. Stock, J.H. (1986a) Deep sea origin of cave faunas, an unlikely supposition. Stygologia, 2, 105 111.
53. Stock, J.H. (1986b) Two new amphipod crustaceans of the genus Bahadzia from 'blue holes' in the Bahamas and some remarks on the origin of the insular stygofaunas of the Atlantic. Journal of Natural History, 20, 921 933.
54. Stock, J.H. (1986c) Caribbean biogeography and a biological calendar for geological events. Crustacean biogeography: Crustacean issues 3 (ed. by R.H. Gore K.L. Heck pp. 195 203. A. A. Balkema, Rotterdam, the Netherlands.
55. Stock, J.H., Iliffe, T.M. Williams, D. (1986) The concept 'anchialine' reconsidered. Stygologia, 2, 90 92.
56. Sturmbauer, C., Levinton, J.S. Christy, J. (1996) Molecular phylogeny analysis of fiddler crabs: test of the hypothesis of increasing behavioral complexity in evolution. Proceedings of the National Academy of Sciences USA, 93, 10855 10857.
57. Swofford, D.L. (2002) paup* - Phylogenetic analysis using parsimony (* and other methods). Version 4.0b5. Sinauer Associates, Sunderland, MA, USA.
58. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876 4882.
59. Webb, M.S. (2003) Intraspecific relationships among the stygobitic shrimp Typhlatya mitchelli, by analyzing sequence data from mitochondrial DNA. MSc Thesis, Texas A&M University, College Station, TX, USA.
60. Weyl, P.K. (1970) Oceanography. John Wiley & Sons, New York.
61. Wilkens, H. (1979) Regressive evolution and phylogenetic age: the history of colonization of freshwaters of Yucatan by fish and crustacea. Association of Mexican Cave Studies Bulletin, 8, 237 243.
62. Williams, D.D. Williams, N.E. (1999) Freshwater invertebrates from the Bermuda Islands and their zoogeographical affinities. Tropical Zoology, 11, 353 369.