Population structure in the freshwater shrimp (Paratya australiensis) inferred from allozymes and mitochondrial DNA

Heredity

Volumn 90, Issue 1, 2003, Pages 64-70

  Hurwood, D A ^a,b   Hughes, J M ^a   Bunn, S E ^a   Cleary, C ^a  

^a GRIFFITH UNIVERSITY   (Australia)

^b QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

Author keywords

Allozymes; Balancing selection; Dispersal; Gene flow; mtDNA; Paratya australiensis

Indexed keywords

ALLOZYME; AQUATIC ORGANISM; CRUSTACEAN; GENE FLOW; GENETIC STRUCTURE; POPULATION STRUCTURE;

DECAPODA (CRUSTACEA); DNA, MITOCHONDRIAL; ENZYMES; GENE FREQUENCY; GENETICS, POPULATION; PHYLOGENY;

AUSTRALIA;

CRUSTACEA; DECAPODA (CRUSTACEA); INVERTEBRATA; PARATYA; PARATYA AUSTRALIENSIS;

EID: 0037284115     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.hdy.6800179     Document Type: Article

References (29)

1. Avise JC (1994). Molecular Markers, Natural History and Evolution. Chapman & Hall: New York.
2. Campbell NJH, Hartiss FC, Elphinstone MS, Baverstock PR (1995). Outgroup heteroduplex analysis using temperature gradient gel electrophoresis: high resolution, large scale, screening of DNA variation in the mitochondrial control region. Mol Ecol 4: 407-418.
3. Castella V, Ruedi M, Excoffier L (2001). Contrasted patterns of mitochondrial and nuclear structure among nursery colonies of the bat Myotis myotis. J Evol Biol 14: 708-720.
4. Cavalli-Sforza LL, Edwards AWF (1967). Phylogenetic analysis: models and estimation procedures. Evolution 21: 550-570.
5. Clement M, Posada D, Crandall KA (2000). TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659.
6. Crandall KA, Templeton AR (1996). Applications of intraspecific phylogenetics. In: Harvey PH, Leigh Brown AJ, Maynard Smith J, Nee S (eds). New Uses for New Phylogenies, Oxford University Press: Oxford, pp 81-99.
7. Felsenstein J (1995). Phylogeny Inference Package (PHYLIP) version 3.5c, University of Washington: Seattle, WA.
8. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Marine Biol Biotechnol 3: 294-299.
9. Hancock MA, Bunn SE (1999). Swimming response to water-current in Paratya australiensis Kemp, 1917 (Decapoda: Atyidae) under laboratory conditions. Crustaceana 72: 313-323.
10. Hernandez-Martich JD, Smith MH (1990). Patterns of genetic variation in eastern mosquitofish (Gambusia holbrooki Girard) from the Piedmont and coastal plains of three drainages. Copeia 3: 619-630.
11. Hughes JM, Bunn SE, Kingston M, Hurwood DA (1995). Genetic differentiation and dispersal among populations of Paratya australiensis (Atyidae) in rainforest streams in southeast Queensland, Australia. J N Am Benth Soc 14: 158-173.
12. Hughes JM, Goudkamp K, Hurwood D, Hancock M, Bunn S (in press). Translocation causes extinction of a local population of the freshwater shrimp Paratya australiensis (Atyidae). Conserv Biol.
13. Hurwood DA, Hughes JM (1998). Phylogeography of the freshwater fish, Mogurnda adspersa, in streams of northeastern Queensland, Australia: evidence for altered drainage patterns. Mol Ecol 7: 1507-1517.
14. Hurwood DA, Hughes JM (2001). Nested clade analysis of the freshwater shrimp, Caridina zebra (Decapoda: Atyidae), from north-eastern Australia. Mol Ecol 10: 113-125.
15. Karl SA, Avise JC (1992). Balancing selection at allozyme loci in oysters: implications for nuclear RFLPs. Science 256: 100-102.
16. Kimura M (1980). A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
17. Koehn RK, Newell RIE, Immermen (1980). Maintenance of an aminopeptidase allele frequency cline by natural selection. Proc Natl Acad Sci USA 77: 5385-5389.
18. Kumar S, Tamura K, Jakobsen IB, Nei M (2001). MEGA: Molecular Evolutionary Genetics Analysis software (Version 2.1). Bioinformatics 17: 1244-1245.
19. Lessa EP, Applebaum G (1993). Screening techniques for detecting allelic variation in DNA sequences. Mol Ecol 2: 119-129.
20. Meffe GK, Vrijenhoek RC (1988). Conservation genetics in the management of desert fishes. Conservation Biol 2: 157-169.
21. Moritz C (1994). Defining 'Evolutionary Significant Units' for conservation. Trends Ecol Evol 9: 373-375.
22. Nevo E, Perl T, Beiles A, Wool D (1981). Mercury selection of allozyme genetypes in shrimps. Experientia 37: 1152-1154.
23. Oakeshott JG (1976). Biochemical differences between alcohol dehydrogenases of Drosophila melanogaster. Aust J Biol Sci 29: 265-274.
24. Shank TM, Black MB, Halanych KM, Lutz RA, Vrijenhoek RC (1999). Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): evidence from mitochondrial cytochrome oxidase subunit I. Phylogenet Evol 13: 244-254.
25. Slatkin M (1981). Estimating levels of gene flow in natural populations. Evolution 47: 264-279.
26. Tamura K, Aotsuka T (1988). Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedure. Biochem Genet 26: 815-819.
27. Templeton AR (1998). Nested clade analysis of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol 7: 381-397.
28. Watt WB (1977). Adaptation at specific loci. I. Natural selection on phosphoglucose isomerase of Colias butterflies: biochemical and population aspects. Genetics 87: 177-194.
29. Watt WB (1983). Adaptation at specific loci. II. Demographic and biochemical elements in the maintenance of the Colias Pgi polymorphism. Genetics 103: 691-724.