-
1
-
-
0037133671
-
Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
-
Akashi H, Gojobori T (2002) Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 99:3695-3700
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 3695-3700
-
-
Akashi, H.1
Gojobori, T.2
-
2
-
-
27744489090
-
Amino acid variation in cellular processes in 108 bacterial proteomes.
-
Bharanidharan D, Gautham N (2005) Amino acid variation in cellular processes in 108 bacterial proteomes. Arch Microbiol 184:168-174
-
(2005)
Arch Microbiol
, vol.184
, pp. 168-174
-
-
Bharanidharan, D.1
Gautham, N.2
-
3
-
-
15444350252
-
The complete genome sequence of Escherichia coli k-12
-
Blattner FR et al (1997) The complete genome sequence of Escherichia coli k-12. Science 277:1453-1474
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
-
4
-
-
0034736516
-
Second codon positions of genes and the secondary structures of proteins. Relationships and implications for the origin of the genetic code
-
Chiusano ML et al (2000) Second codon positions of genes and the secondary structures of proteins. Relationships and implications for the origin of the genetic code. Genes 261:63-69
-
(2000)
Genes
, vol.261
, pp. 63-69
-
-
Chiusano, M.L.1
-
5
-
-
0032087026
-
Selection cost of amino acid substitutions in ColEl and Colla gene clusters harbored by Escherichia coli
-
Craig CL, Weber RS (1998) Selection cost of amino acid substitutions in ColEl and Colla gene clusters harbored by Escherichia coli. Mol Biol Evol 15:774-776
-
(1998)
Mol Biol Evol
, vol.15
, pp. 774-776
-
-
Craig, C.L.1
Weber, R.S.2
-
6
-
-
0031582635
-
Genetic code synonym quotas and amino acid complexity: Cutting the cost of proteins?
-
Dufton MJ (1997) Genetic code synonym quotas and amino acid complexity: cutting the cost of proteins? J Theor Biol 187:165-173
-
(1997)
J Theor Biol
, vol.187
, pp. 165-173
-
-
Dufton, M.J.1
-
7
-
-
13244255415
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
doi: 10.1186/1471-2105-5-113
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. BMC Bioinformatics. doi: 10.1186/1471-2105-5-113
-
(2004)
BMC Bioinformatics
-
-
Edgar, R.C.1
-
8
-
-
26444558214
-
How essential are nonessential genes?
-
Fang G, Rocha E, Danchin A (2005) How essential are nonessential genes? Mol Biol Evol 222:147-2156
-
(2005)
Mol Biol Evol
, vol.222
, pp. 147-2156
-
-
Fang, G.1
Rocha, E.2
Danchin, A.3
-
9
-
-
0141504252
-
Experimental determination and system level analysis of essential genes in Escherichia coli MG1655
-
Gerdes SY et al (2003) Experimental determination and system level analysis of essential genes in Escherichia coli MG1655. J Bacteriol 185:5672-5684
-
(2003)
J Bacteriol
, vol.185
, pp. 5672-5684
-
-
Gerdes, S.Y.1
-
10
-
-
0037040541
-
Molecular chaperones in the cytosol: From nascent chain to folded protein
-
Hartl FU, Hayer-Hartl M (2002) Molecular chaperones in the cytosol: from nascent chain to folded protein. Science 295:1852-1858
-
(2002)
Science
, vol.295
, pp. 1852-1858
-
-
Hartl, F.U.1
Hayer-Hartl, M.2
-
11
-
-
31544438578
-
Highly accurate genome sequences of the Escherichia K-12 strains MG1655 and W3110
-
doi: 10.1038/msb4100049
-
Hayashi K et al (2006) Highly accurate genome sequences of the Escherichia K-12 strains MG1655 and W3110. Mol Syst Biol. doi: 10.1038/msb4100049
-
(2006)
Mol Syst Biol
-
-
Hayashi, K.1
-
12
-
-
0037308511
-
Cost-minimization of amino acid usage.
-
Herve S (2003) Cost-minimization of amino acid usage. J Mol Evol 56:151-161
-
(2003)
J Mol Evol
, vol.56
, pp. 151-161
-
-
Herve, S.1
-
13
-
-
0035963414
-
Protein dispensability and the rate of evolution
-
Hirsh AE, Fraser HB (2001) Protein dispensability and the rate of evolution. Nature 411:1046-1049
-
(2001)
Nature
, vol.411
, pp. 1046-1049
-
-
Hirsh, A.E.1
Fraser, H.B.2
-
14
-
-
0033565762
-
Do essential genes evolve slowly?
-
Hust LD, Smith NGC (1999) Do essential genes evolve slowly? Curr Biol 9:747-750
-
(1999)
Curr Biol
, vol.9
, pp. 747-750
-
-
Hust, L.D.1
Smith, N.G.C.2
-
16
-
-
0036078078
-
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
-
Jordan IK, Rogozin IB, Wolf YI, Koonin EV (2002) Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res 12:962-968
-
(2002)
Genome Res
, vol.12
, pp. 962-968
-
-
Jordan, I.K.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
18
-
-
33644839580
-
CoSMoS: Conserved sequence motif search in the proteome
-
doi: 10.1186/1471-2105-7-37
-
Liu XI, Korde N, Jakob U, Leichert L (2006) CoSMoS: conserved sequence motif search in the proteome. BMC Bioinformatics. doi: 10.1186/1471-2105-7-37
-
(2006)
BMC Bioinformatics
-
-
Liu, X.I.1
Korde, N.2
Jakob, U.3
Leichert, L.4
-
20
-
-
0036730186
-
A strong effect of at mutational bias on amino acid usage in Buchnera is mitigated at high-expression genes.
-
Palacios C, Wernegreen JJ (2002) A strong effect of AT mutational bias on amino acid usage in Buchnera is mitigated at high-expression genes. Mol Biol Evol 19:1575-1584
-
(2002)
Mol Biol Evol
, vol.19
, pp. 1575-1584
-
-
Palacios, C.1
Wernegreen, J.J.2
-
21
-
-
0037472928
-
Genome function: Rate of evolution and gene dispensability (response)
-
Pál C, Papp B, Hurst LD (2003) Genome function: rate of evolution and gene dispensability (response). Nature 421:497-498
-
(2003)
Nature
, vol.421
, pp. 497-498
-
-
Pál, C.1
Papp, B.2
Hurst, L.D.3
-
22
-
-
1242284655
-
An analysis of determinants of amino acids substitution rates in bacterial proteins
-
Rocha EP, Danchin A (2004) An analysis of determinants of amino acids substitution rates in bacterial proteins. Mol Biol Evol 21:108-116
-
(2004)
Mol Biol Evol
, vol.21
, pp. 108-116
-
-
Rocha, E.P.1
Danchin, A.2
-
24
-
-
14644424009
-
Length, protein-protein interactions, and complexity
-
Tan T, Frenkel D, Gupta V, Deem MW (2005) Length, protein-protein interactions, and complexity. Physica A 350:52-62
-
(2005)
Physica a
, vol.350
, pp. 52-62
-
-
Tan, T.1
Frenkel, D.2
Gupta, V.3
Deem, M.W.4
-
25
-
-
33644897576
-
Further understanding human disease genes by comparing with housekeeping genes and other genes
-
doi: 10.1186/1471-2164-7-31
-
Tu Z, Wang L, Xu M, Zhou X, Chen T, Sun F (2006) Further understanding human disease genes by comparing with housekeeping genes and other genes. BMC Genomics. doi: 10.1186/1471-2164-7-31
-
(2006)
BMC Genomics
-
-
Tu, Z.1
Wang, L.2
Xu, M.3
Zhou, X.4
Chen, T.5
Sun, F.6
-
26
-
-
33748562538
-
Evolutionary constraints on yeast protein size
-
doi: 10.1186/1471-2148-6-61
-
Warringer J, Blomberg A (2006) Evolutionary constraints on yeast protein size. BMC Evol Biol. doi: 10.1186/1471-2148-6-61
-
(2006)
BMC Evol Biol
-
-
Warringer, J.1
Blomberg, A.2
-
28
-
-
0038708556
-
Rate of protein evolution versus fitness effect of gene deletion.
-
Yang J, Gu Z, Li W-H (2003) Rate of protein evolution versus fitness effect of gene deletion. Mol Biol Evol 20:772-774
-
(2003)
Mol Biol Evol
, vol.20
, pp. 772-774
-
-
Yang, J.1
Gu, Z.2
Li, W.-H.3
-
29
-
-
0034161476
-
Protein-length distributions for the three domains of life.
-
Zhang J (2000) Protein-length distributions for the three domains of life. Trends Genet 16:107-109
-
(2000)
Trends Genet
, vol.16
, pp. 107-109
-
-
Zhang, J.1
-
30
-
-
16344369543
-
Significant impact of protein dispensability on the instantaneous rate of protein evolution.
-
Zhang J, He X (2005) Significant impact of protein dispensability on the instantaneous rate of protein evolution. Mol Biol Evol 22:1147-1155
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1147-1155
-
-
Zhang, J.1
He, X.2
|