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Volumn 184, Issue 3, 2005, Pages 168-174

Amino acid variation in cellular processes in 108 bacterial proteomes

Author keywords

Amino acid composition; Functional category; Hydropathy index; Nucleotide bias

Indexed keywords

AMINO ACID; NUCLEOTIDE; PROTEIN; PROTEOME;

EID: 27744489090     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-005-0034-z     Document Type: Article
Times cited : (4)

References (19)
  • 1
    • 0035546157 scopus 로고    scopus 로고
    • Gene expression and molecular evolution
    • Akashi H (2001) Gene expression and molecular evolution. Curr Opin Genet Dev 11:660-666
    • (2001) Curr Opin Genet Dev , vol.11 , pp. 660-666
    • Akashi, H.1
  • 2
    • 0037133671 scopus 로고    scopus 로고
    • Metabolic efficency and amino acid composition in the proteomes of Escherichia Coli and Bacillus subtilis
    • USA
    • Akashi H, Gojobori T (2002) Metabolic efficency and amino acid composition in the proteomes of Escherichia Coli and Bacillus subtilis. Proc Natl Acad Sci USA 99:3695-3700
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 3695-3700
    • Akashi, H.1    Gojobori, T.2
  • 3
    • 1342345235 scopus 로고    scopus 로고
    • Correlations between nucleotide frequencies and amino acid composition in 115 bacterial species
    • Bharanidharan D, Bhargavi GR, Uthanumallian K, Gautham N (2004) Correlations between nucleotide frequencies and amino acid composition in 115 bacterial species. Biochem Biophys Res Commun 315:1097-1103
    • (2004) Biochem Biophys Res Commun , vol.315 , pp. 1097-1103
    • Bharanidharan, D.1    Bhargavi, G.R.2    Uthanumallian, K.3    Gautham, N.4
  • 5
    • 2542451914 scopus 로고    scopus 로고
    • Preferred amino acids and thermostability
    • Farias ST, Bonato MCM (2003) Preferred amino acids and thermostability. Genet Mol Res 2:383-393
    • (2003) Genet Mol Res , vol.2 , pp. 383-393
    • Farias, S.T.1    Bonato, M.C.M.2
  • 6
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27-30
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 7
    • 2942567744 scopus 로고    scopus 로고
    • Global analysis of predicted proteomes: Functional adaptation of physical properties
    • USA
    • Knight CG, Kassen R, Hebestreit H, Rainey PB (2004) Global analysis of predicted proteomes: Functional adaptation of physical properties. Proc Natl Acad Sci USA 101:8390-8395
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 8390-8395
    • Knight, C.G.1    Kassen, R.2    Hebestreit, H.3    Rainey, P.B.4
  • 8
    • 0035220937 scopus 로고    scopus 로고
    • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    • research0010.1-0010.13
    • Knight RD, Freeland SJ, Landweber LF (2001) A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes. Genome Biol 2:research0010.1-0010.13
    • (2001) Genome Biol , vol.2
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 9
    • 0035312933 scopus 로고    scopus 로고
    • Identification of thermophilic species by the amino acid compositions deduced from their genomes
    • Kreil DP, Ouzounis CA (2001) Identification of thermophilic species by the amino acid compositions deduced from their genomes. Nucleic Acids Res 29:1608-1615
    • (2001) Nucleic Acids Res , vol.29 , pp. 1608-1615
    • Kreil, D.P.1    Ouzounis, C.A.2
  • 10
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 11
    • 0031593216 scopus 로고    scopus 로고
    • Influence of genomic G + C content on average amino-acid composition of proteins from 59 bacterial species
    • Lobry JR (1997) Influence of genomic G + C content on average amino-acid composition of proteins from 59 bacterial species. Gene 205:309-316
    • (1997) Gene , vol.205 , pp. 309-316
    • Lobry, J.R.1
  • 12
    • 0038480747 scopus 로고    scopus 로고
    • Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria
    • Lobry JR, Chessel D (2003) Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria. J Appl Genet 44:235-261
    • (2003) J Appl Genet , vol.44 , pp. 235-261
    • Lobry, J.R.1    Chessel, D.2
  • 13
    • 0242630433 scopus 로고    scopus 로고
    • Species and strain-specific patterns of low-complexity proteins in Escherichia and Mycobacteria
    • Nandi T, Kannan K, Ramachandran S (2003) Species and strain-specific patterns of low-complexity proteins in Escherichia and Mycobacteria. Curr Sci 85:185-187
    • (2003) Curr Sci , vol.85 , pp. 185-187
    • Nandi, T.1    Kannan, K.2    Ramachandran, S.3
  • 15
    • 0034744173 scopus 로고    scopus 로고
    • Whole proteome pI values correlate with subcellular localizations of proteins for organisms within the three domains of life
    • Schwartz R, Ting CS, King J (2001) Whole proteome pI values correlate with subcellular localizations of proteins for organisms within the three domains of life. Genome Res 11:703-709
    • (2001) Genome Res , vol.11 , pp. 703-709
    • Schwartz, R.1    Ting, C.S.2    King, J.3
  • 16
    • 0033745103 scopus 로고    scopus 로고
    • Nucleotide bias causes a genomewide bias in the amino acid composition of proteins
    • Singer GAC, Hickey DA (2000) Nucleotide bias causes a genomewide bias in the amino acid composition of proteins. Mol Biol Evol 17:1581-1588
    • (2000) Mol Biol Evol , vol.17 , pp. 1581-1588
    • Singer, G.A.C.1    Hickey, D.A.2
  • 18
    • 0001300503 scopus 로고
    • Correlation between base composition of deoxyribonucleic acid and amino acid composition and protein
    • USA
    • Sueoka N (1961) Correlation between base composition of deoxyribonucleic acid and amino acid composition and protein, Proc Natl Acad Sci USA 47:1141-1149
    • (1961) Proc Natl Acad Sci , vol.47 , pp. 1141-1149
    • Sueoka, N.1
  • 19
    • 0037019808 scopus 로고    scopus 로고
    • Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: A global picture with correspondence analysis
    • Tekaia F, Yeramian E, Dujon B (2002) Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: A global picture with correspondence analysis. Gene 297:51-60
    • (2002) Gene , vol.297 , pp. 51-60
    • Tekaia, F.1    Yeramian, E.2    Dujon, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.