Coherent oscillations in ultrafast fluorescence of photoactive yellow protein

Journal of Chemical Physics

Volumn 127, Issue 21, 2007, Pages

  Nakamura, Ryosuke ^a   Hamada, Norio ^a   Ichida, Hideki ^a   Tokunaga, Fumio ^a   Kanematsu, Yasuo ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENCE; FLUORESCENCE SPECTROSCOPY; GROUND STATE; NATURAL FREQUENCIES; OPTICAL KERR EFFECT; WAVE PACKETS;

FEMTOSECOND FLUORESCENCE SPECTROSCOPY; ULTRAFAST FLUORESCENCE;

PROTEINS;

BACTERIAL PROTEIN; PHOTOACTIVE YELLOW PROTEIN, BACTERIA; UNCLASSIFIED DRUG; VISUAL PROTEINS AND PIGMENTS;

ARTICLE; CHEMICAL MODEL; CHEMISTRY; LIGHT; PHOTOCHEMISTRY; RADIATION EXPOSURE; SPECTROFLUOROMETRY;

BACTERIAL PROTEINS; LIGHT; MODELS, CHEMICAL; PHOTOCHEMISTRY; PHOTORECEPTORS, MICROBIAL; SPECTROMETRY, FLUORESCENCE;

EID: 36849077548     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2802297     Document Type: Article

References (53)

1. J.-L. Martin and M. H. Vos, Annu. Rev. Biophys. Biomol. Struct. 21, 199 (1992).
2. M. H. Vos and J.-L. Martin, Biochim. Biophys. Acta 1411, 1 (1999).
3. M. H. Vos, J.-C. Lambry, S. J. Robles, D. C. Youvan, and J.-L. Martin, Proc. Natl. Acad. Sci. U.S.A. 88, 8885 (1991).
4. M. H. Vos, F. Rappaport, J.-C. Lambry, J. Breton, and J.-L. Martin, Nature (London) 363, 320 (1993).
5. M. H. Vos, M. R. Jones, C. N. Hunter, J. Breton, and J.-L. Martin, Proc. Natl. Acad. Sci. U.S.A. 91, 12701 (1994).
6. S. Savikhin, Y. Zhu, S. Lin, R. E. Blankenship, and W. S. Struve, J. Phys. Chem. 98, 10322 (1994).
7. R. J. Stanley and S. G. Boxer, J. Phys. Chem. 99, 859 (1995).
8. S. E. Bradforth, R. Jimenez, F. van Mourik, R. van Grondelle, and G. R. Fleming, J. Phys. Chem. 99, 16179 (1995).
9. R. Kumble, S. Palese, R. W. Visschers, P. L. Dutton, and R. M. Hochstrasser, Chem. Phys. Lett. 261, 396 (1996).
10. W. M. Diffey, B. J. Homoelle, M. D. Edington, and W. F. Beck, J. Phys. Chem. B 102, 2776 (1998).
11. L. Zhu, P. Li, M. Huang, J. T. Sage, and P. M. Champion, Phys. Rev. Lett. 72, 301 (1994).
12. L. Zhu, J. T. Sage, and P. M. Champion, Science 266, 629 (1994).
13. U. Liebl, G. Lipowski, M. Negrerie, J.-C. Lambry, J.-L. Martin, and M. H. Vos, Nature (London) 401, 181 (1999).
14. R. W. Schoenlein, L. A. Peteanu, R. A. Mathies, and C. V. Shank, Science 254, 412 (1991).
15. L. A. Peteanu, R. W. Schoenlein, Q. Wang, R. A. Mathies, and C. V. Shank, Proc. Natl. Acad. Sci. U.S.A. 90, 11762 (1993).
16. Q. Wang, R. W. Schoenlein, L. A. Peteanu, R. A. Mathies, and C. V. Shank, Science 266, 422 (1994).
17. L. D. Book, D. C. Arnett, H. Hu, and N. F. Scherer, J. Phys. Chem. A 102, 4350 (1998).
18. M. Chattoraj, B. A. King, G. U. Bublitz, and S. G. Boxer, Proc. Natl. Acad. Sci. U.S.A. 93, 8362 (1996).
19. K. L. Litvinenko and S. R. Meech, Phys. Chem. Chem. Phys. 6, 2012 (2004).
20. N. Mataga, H. Chosrowjan, Y. Shibata, Y. Imamoto, M. Kataoka, and F. Tokunaga, Chem. Phys. Lett. 352, 220 (2002).
21. N. Mataga, H. Chosrowjan, S. Taniguchi, N. Hamada, F. Tokunaga, Y. Imamoto, and M. Kataoka, Phys. Chem. Chem. Phys. 5, 2454 (2003).
22. H. Chosrowjan, S. Taniguchi, N. Mataga, M. Unno, S. Yamauchi, N. Hamada, M. Kumauchi, and F. Tokunaga, J. Phys. Chem. B 108, 2686 (2004).
23. R. Nakamura, Y. Kanematsu, M. Kumauchi, N. Hamada, and F. Tokunaga, J. Lumin. 102&103, 21 (2003).
24. R. Nakamura, N. Hamada, H. Ichida, F. Tokunaga, and Y. Kanematsu, In Ultrafast Phenomena XIV, edited by, T. Kobayashi, T. Okada, T. Kobayashi, K. A. Nelson, and, S. De Silvestri, (Springer-Verlag, Berlin, 2005), pp. 607-609.
25. M. A. Kahlow, W. Jarzeba, T. P. DuBruil, and P. F. Barbara, Rev. Sci. Instrum. 59, 1098 (1988).
26. S. J. Rosenthal, X. Xie, M. Du, and G. R. Fleming, J. Chem. Phys. 95, 4715 (1991).
27. M. L. Horng, J. A. Gardecki, A. Papazyan, and M. Maroncelli, J. Phys. Chem. 99, 17311 (1995).
28. I. V. Rubtsov and K. Yoshihara, J. Phys. Chem. A 1089-5639 10.1021/jp971440o 101, 6138 (1997); I. V. Rubtsov and K. Yoshihara, J. Phys. Chem. A 103, 10202 (1999).
29. I. V. Rubtsov and K. Yoshihara, J. Phys. Chem. A 1089-5639 10.1021/jp971440o 101, 6138 (1997); I. V. Rubtsov and K. Yoshihara, J. Phys. Chem. A 103, 10202 (1999).
30. A. Mokhtari and J. Chesnoy, IEEE J. Quantum Electron. 25, 2528 (1989).
31. A. Mokhtari, A. Chebira, and J. Chesnoy, J. Opt. Soc. Am. B 7, 1551 (1990).
32. T. Pullerits, F. van Mourik, R. Monshouwer, R. W. Visschers, and R. van Grondelle, J. Lumin. 58, 168 (1994).
33. T. Pullerits, K. J. Visscher, S. Hess, V. Sundstron, A. Freiberg, K. Timpmann, and R. van Grondelle, Biophys. J. 66, 236 (1994).
34. H. M. Visser, O. J. G. Somsen, F. van Mourik, S. Lin, I. H. M. van Stokkum, and R. van Grondelle, Biophys. J. 69, 1083 (1995).
35. T. E. Meyer, Biochim. Biophys. Acta 806, 175 (1985).
36. G. E. Borgstahl, D. R. Williams, and E. D. Getzoff, Biochemistry 34, 6278 (1995).
37. U. K. Genick, G. E. O. Borgstahl, K. Ng, Z. Ren, C. Pradervand, P. M. Burke, V. Srajer, T.-Y. Teng, W. Schildkamp, D. E. McRee, K. Moffat, and E. D. Getzoff, Science 275, 1471 (1997).
38. M. Baca, G. E. O. Borgstahl, M. Boissinot, P. M. Burke, D. R. Williams, K. A. Slater, and E. D. Getzoff, Biochemistry 33, 14369 (1994).
39. K. J. Hellingwerf, J. Hendriks, and T. Gensch, J. Phys. Chem. A 107, 1082 (2003).
40. K. Mihara, O. Hisatomi, Y. Imamoto, M. Kataoka, and F. Tokunaga, J. Biochem. (Tokyo) 121, 876 (1997).
41. Y. Imamoto, T. Ito, M. Kataoka, and F. Tokunaga, FEBS Lett. 374, 157 (1995).
42. R. Nakamura and Y. Kanematsu, Rev. Sci. Instrum. 75, 636 (2004).
43. M. Hama and M. Aihara, Phys. Rev. A 35, 4842 (1987).
44. H. Chosrowjan, N. Mataga, N. Nakashima, Y. Imamoto, and F. Tokunaga, Chem. Phys. Lett. 270, 267 (1997).
45. H. Chosrowjan, N. Mataga, Y. Shibata, Y. Imamoto, and F. Tokunaga, J. Phys. Chem. B 102, 7695 (1998).
46. H. Hanada, Y. Kanematsu, S. Kinoshita, M. Kumauchi, J. Sasaki, and F. Tokunaga, J. Lumin. 94&95, 593 (2001).
47. M. Vengris, M. A. van der Horst, G. Zgrablic, I. H. M. van Stokkum, S. Haacke, M. Chergui, K. J. Hellingwerf, R. van Grondelle, and D. S. Larsen, Biophys. J. 87, 1848 (2004).
48. H. Kandori, Y. Furutani, S. Nishimura, Y. Shichida, H. Chosrowjan, Y. Shibata, and N. Mataga, Chem. Phys. Lett. 334, 271 (2001).
49. M. Du and G. R. Fleming, Biophys. Chem. 48, 101 (1993).
50. M. Kim, R. A. Mathies, W. D. Hoff, and K. J. Hellingwerf, Biochemistry 34, 12669 (1995).
51. M. Unno, M. Kumauchi, J. Sasaki, F. Tokunaga, and S. Yamauchi, Biochemistry 41, 5668 (2002).
52. M. Unno, M. Kumauchi, F. Tokunaga, and S. Yamauchi, J. Phys. Chem. 111, 2719 (2007).
53. R. Nakamura, P. Wang, R. Fujii, Y. Koyama, H. Hashimoto, and Y. Kanematsu, J. Lumin. 119&120, 442 (2006).