Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes

Molecular and Biochemical Parasitology

Volumn 135, Issue 1, 2004, Pages 1-11

  Florens, Laurence ^a,f   Liu, Xia ^b,c   Wang, Yufeng ^b,d   Yang, Shiguang ^b   Schwartz, Owen ^c   Peglar, Michael ^b   Carucci, Daniel J ^e   Yates III, John R ^a   Wu, Yimin ^b,c  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b AMERICAN TYPE CULTURE COLLECTION   (United States)

^c NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^d UNIVERSITY OF TEXAS AT SAN ANTONIO   (United States)

^e NAVAL MEDICAL RESEARCH CENTER   (United States)

^f STOWERS INSTITUTE FOR MEDICAL RESEARCH   (United States)

Author keywords

IFA; Immunofluorescence assay; Malaria; MS MS; MudPIT; Multidimensional protein identification technology; Parasite infected erythrocyte; Parasite infected erythrocyte surface protein; PCR; PIE; PIESP; Polymerase chain reaction; Tandem mass spectrometry

Indexed keywords

BIOTIN; ISOPROTEIN; MEMBRANE PROTEIN; PARASITE INFECTED ERYTHROCYTE SURFACE PROTEIN 1; PARASITE INFECTED ERYTHROCYTE SURFACE PROTEIN 2; STREPTAVIDIN; UNCLASSIFIED DRUG;

ANTIBODY SPECIFICITY; ARTICLE; CELL INFILTRATION; CELL ULTRASTRUCTURE; CONFOCAL MICROSCOPY; CONTROLLED STUDY; ERYTHROCYTE; GENETIC CODE; GENETIC CONSERVATION; MALARIA; MOLECULAR INTERACTION; NONHUMAN; PARASITE ISOLATION; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEIN LOCALIZATION; PROTEOMICS;

AMINO ACID SEQUENCE; ANIMALS; ANTIBODIES, PROTOZOAN; ANTIGENS, PROTOZOAN; CONSERVED SEQUENCE; ERYTHROCYTE MEMBRANE; ERYTHROCYTES; GENES, PROTOZOAN; MEMBRANE PROTEINS; MICROSCOPY, FLUORESCENCE; MOLECULAR SEQUENCE DATA; PLASMODIUM FALCIPARUM; PROTEOMICS; PROTOZOAN PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

PLASMODIUM FALCIPARUM;

EID: 1842763561     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2003.12.007     Document Type: Article

References (29)

1. Deitsch K.W., Wellems T.E. Membrane modifications in erythrocytes parasitized by Plasmodium falciparum. Mol. Biochem. Parasitol. 76(1/2):1996;1-10.
2. Urban B.C., Ferguson D.J., Pain A.et al. Plasmodium falciparum-infected erythrocytes modulate the maturation of dendritic cells [see comments]. Nature. 400(6739):1999;73-77.
3. Craig A., Scherf A. Molecules on the surface of the Plasmodium falciparum infected erythrocyte and their role in malaria pathogenesis and immune evasion. Mol. Biochem. Parasitol. 115(2):2001;129-143.
4. Gardner M.J., Hall N., Fung E.et al. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 419(6906):2002;498-511.
5. Florens L., Washburn M.P., Raine J.D.et al. A proteomic view of the Plasmodium falciparum life cycle. Nature. 419(6906):2002;520-526.
6. Lasonder E., Ishihama Y., Andersen J.S.et al. Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry. Nature. 19(6906):2002;537-542.
7. Washburn M.P., Yates J.R. III Analysis of the microbial proteome. Curr. Opin. Microbiol. 3(3):2000;292-297.
8. Trager W., Jensen J.B. Human malaria parasites in continuous culture. Science. 193(4254):1976;673-675.
9. Washburn M.P., Wolters D., Yates J.R. III Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19(3):2001;242-247.
10. Sadygov R.G., Yates J.R. III A Hypergeometric Probability model for protein identification and validation using tandem mass spectral data and protein sequence. Anal. Chem. 75(15):2003;3792-3798.
11. Eng J.K., McCormack A.L., Yates J.R. III An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5(11):1994;976-989.
12. Tabb D.L., McDonald W.H., Yates J.R. III DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1(1):2002;21-26.
13. Wootton J.C. Non-globular domains in protein sequences: automated segmentation using complexity measures. Comput. Chem. 18(3):1994;269-285.
14. Notredame C., Higgins D.G., Heringa J. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302(1):2000;205-217.
15. Nielsen H., Engelbrecht J., Brunak S., von Heijne G. A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Int. J. Neural Syst. 8(5/6):1997;581-599.
16. Krogh A., Larsson B., von Heijne G., Sonnhammer E.L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305(3):2001;567-580.
17. Carlton J.M., Angiuoli S.V., Suh B.B.et al. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):2002;512-519.
18. Wickham M.E., Rug M., Ralph S.A.et al. Trafficking and assembly of the cytoadherence complex in Plasmodium falciparum-infected human erythrocytes. EMBO J. 20(20):2001;5636-5649.
19. Waterkeyn J.G., Wickham M.E., Davern K.M.et al. Targeted mutagenesis of Plasmodium falciparum erythrocyte membrane protein 3 (PfEMP3) disrupts cytoadherence of malaria-infected red blood cells. EMBO J. 19(12):2000;2813- 2823.
20. Gormley J.A., Howard R.J., Taraschi T.F. Trafficking of malarial proteins to the host cell cytoplasm and erythrocyte surface membrane involves multiple pathways. J. Cell Biol. 119(6):1992;1481-1495.
21. Handunnetti S.M., Van Schravendijk M.R., Hasler T., Barnwell J.W., Greenwalt D.E., Howard R.J. Involvement of CD36 on erythrocytes as a rosetting receptor for Plasmodium falciparum-infected erythrocytes. Blood. 80(8):1992;2097-2104.
22. Blisnick T., Morales B.M., Barale J.C.et al. Pfsbp1, a Maurer's cleft Plasmodium falciparum protein, is associated with the erythrocyte skeleton. Mol. Biochem. Parasitol. 111(1):2000;107-121.
23. Le Roch K.G., Zhou Y., Blair P.L.et al. Discovery of gene function by expression profiling of the malaria parasite life cycle. Science. 301(5639):2003;1503-1508.
24. Desai S.A., Bezrukov S.M., Zimmerberg J. A voltage-dependent channel involved in nutrient uptake by red blood cells infected with the malaria parasite [see comments]. Nature. 406(6799):2000;1001-1005.
25. Kirk K., Horner H.A., Elford B.C., Ellory J.C., Newbold C.I. Transport of diverse substrates into malaria-infected erythrocytes via a pathway showing functional characteristics of a chloride channel. J. Biol. Chem. 269(5):1994;3339-3347.
26. Elliott J.L., Saliba K.J., Kirk K. Transport of lactate and pyruvate in the intraerythrocytic malaria parasite, Plasmodium falciparum. Biochem. J. 355(Pt. 3):2001;733-739.
27. Mayxay M., Chotivanich K., Pukrittayakamee S., Newton P., Looareesuwan S., White N.J. Contribution of humoral immunity to the therapeutic response in falciparum malaria. Am. J. Trop. Med. Hyg. 65(6):2001;918-923.
28. Sharma S., Bhattacharyya M.K. Novel putative protective antigens of Plasmodium falciparum. Indian J. Med. Res. 106:1997;63-69.
29. Marchler-Bauer A., Anderson J.B., DeWeese-Scott C.et al. CDD: a curated Entrez database of conserved domain alignments. Nucleic. Acids Res. 31(1):2003;383-387.