Comparison of the expression of medaka (Oryzias latipes) pitx genes with other vertebrates shows high conservation and a case of functional shuffling in the pituitary

Gene

Volumn 406, Issue 1-2, 2007, Pages 42-50

  Jaszczyszyn, Yan ^a   Haeussler, Maximilian ^a   Heuzé, Aurélie ^a   Debiais Thibaud, Mélanie ^b   Casane, Didier ^b   Bourrat, Franck ^a   Joly, Jean Stéphane ^a  

^a CNRS   (France)

^b France and University of Paris Sud   (France)

Author keywords

Development; Evolution; Hypophysis; Placode; Stomodaeum; Zebrafish

Indexed keywords

ARTICLE; EMBRYO; GENE EXPRESSION; GENE FUNCTION; GENE LOCUS; GENOME; HOMEOBOX; HUMAN; HYPOPHYSIS; MAMMAL; MULTIGENE FAMILY; NONHUMAN; ORTHOLOGY; ORYZIAS; PRIORITY JOURNAL;

ANIMALS; CLONING, MOLECULAR; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; FISH PROTEINS; GENE EXPRESSION; ORYZIAS; PITUITARY GLAND; SYNTENY; VERTEBRATES;

CHORDATA; DANIO RERIO; MAMMALIA; ORYZIAS LATIPES; ORYZIINAE; VERTEBRATA;

EID: 36849031320     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.05.024     Document Type: Article

References (64)

1. Abi-Rached L., Gilles A., Shiina T., Pontarotti P., and Inoko H. Evidence of en bloc duplication in vertebrate genomes. Nat. Genet. 31 (2002) 100-105
2. Arakawa H., et al. Identification and characterization of the ARP1 gene, a target for the human acute leukemia ALL1 gene. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 4573-4578
3. Avaron F., et al. Comparison of even-skipped related gene expression pattern in vertebrates shows an association between expression domain loss and modification of selective constraints on sequences. Evol. Dev. 5 (2003) 145-156
4. Baker C.V., and Bronner-Fraser M. The origins of the neural crest. Part I: embryonic induction. Mech. Dev. 69 (1997) 3-11
5. Bassham S., and Postlethwait J.H. The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica. Development 132 (2005) 4259-4272
6. Boorman C.J., and Shimeld S.M. Cloning and expression of a Pitx homeobox gene from the lamprey, a jawless vertebrate. Dev. Genes Evol. 212 (2002) 349-353
7. Boorman C.J., and Shimeld S.M. Pitx homeobox genes in Ciona and amphioxus show left-right asymmetry is a conserved chordate character and define the ascidian adenohypophysis. Evol. Dev. 4 (2002) 354-365
8. Campione M., et al. The homeobox gene Pitx2: mediator of asymmetric left-right signaling in vertebrate heart and gut looping. Development 126 (1999) 1225-1234
9. Carroll S.B., Grenier J.K., and Weatherbee S.D. From DNA to Diversity (2001), Blackwell Science, Oxford
10. Christiaen L., Bourrat F., and Joly J.S. A modular cis-regulatory system controls isoform-specific pitx expression in ascidian stomodaeum. Dev. Biol. 277 (2005) 557-566
11. Concha M.L., Burdine R.D., Russell C., Schier A.F., and Wilson S.W. A nodal signaling pathway regulates the laterality of neuroanatomical asymmetries in the zebrafish forebrain. Neuron 28 (2000) 399-409
12. Coolen M., et al. Phylogenomic analysis and expression patterns of large Maf genes in Xenopus tropicalis provide new insights into the functional evolution of the gene family in osteichthyans. Dev. Genes Evol. 215 (2005) 327-339
13. Deyts C., Candal E., Joly J.S., and Bourrat F. An automated in situ hybridization screen in the Medaka to identify unknown neural genes. Dev. Dyn. 234 (2005) 698-708
14. Drouin J., Lamolet B., Lamonerie T., Lanctot C., and Tremblay J.J. The PTX family of homeodomain transcription factors during pituitary developments. Mol. Cell. Endocrinol. 140 (1998) 31-36
15. Duboule D. Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony. Development (1994) 135-142 (Suppl)
16. Dutta S., et al. pitx3 defines an equivalence domain for lens and anterior pituitary placode. Development 132 (2005) 1579-1590
17. Ekker M., et al. Relationships among msx gene structure and function in zebrafish and other vertebrates. Mol. Biol. Evol. 14 (1997) 1008-1022
18. Essner J.J., Branford W.W., Zhang J., and Yost H.J. Mesendoderm and left-right brain, heart and gut development are differentially regulated by pitx2 isoforms. Development 127 (2000) 1081-1093
19. Faucourt M., Houliston E., Besnardeau L., Kimelman D., and Lepage T. The pitx2 homeobox protein is required early for endoderm formation and nodal signaling. Dev. Biol. 229 (2001) 287-306
20. Fraser G.J., Berkovitz B.K., Graham A., and Smith M.M. Gene deployment for tooth replacement in the rainbow trout (Oncorhynchus mykiss): a developmental model for evolution of the osteichthyan dentition. Evol. Dev. 8 (2006) 446-457
21. Gage P.J., Suh H., and Camper S.A. The bicoid-related Pitx gene family in development. Mamm. Genome 10 (1999) 197-200
22. Hubbard T.J., et al. Ensembl 2007. Nucleic Acids Res. 35 (2007) D610-DG17
23. Iwamatsu T. Stages of normal development in the medaka Oryzias latipes. Mech. Dev. 121 (1994) 605-618
24. Jaillon O., et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431 (2004) 946-957
25. Joly J.S., Bourrat F., Nguyen V., and Chourrout D. Ol-Prx 3, a member of an additional class of homeobox genes, is unimodally expressed in several domains of the developing and adult central nervous system of the medaka (Oryzias latipes). Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 12987-12992
26. Lamonerie T., Tremblay J.J., Lanctot C., Therrien M., Gauthier Y., and Drouin J. Ptx1, a bicoid-related homeo box transcription factor involved in transcription of the pro-opiomelanocortin gene. Genes Dev. 10 (1996) 1284-1295
27. Lanctot C., Lamolet B., and Drouin J. The bicoid-related homeoprotein Ptx1 defines the most anterior domain of the embryo and differentiates posterior from anterior lateral mesoderm. Development 124 (1997) 2807-2817
28. Lanctot C., Gauthier Y., and Drouin J. Pituitary homeobox 1 (Ptx1) is differentially expressed during pituitary development. Endocrinology 140 (1999) 1416-1422
29. Lanctot C., Moreau A., Chamberland M., Tremblay M.L., and Drouin J. Hindlimb patterning and mandible development require the Ptx1 gene. Development 126 (1999) 1805-1810
30. Li W.H., Gojobori T., and Nei M. Pseudogenes as a paradigm of neutral evolution. Nature 292 (1981) 237-239
31. Liu C., Liu W., Lu M.F., Brown N.A., and Martin J.F. Regulation of left-right asymmetry by thresholds of Pitx2c activity. Development 128 (2001) 2039-2048
32. Logan M., and Tabin C.J. Role of Pitx1 upstream of Tbx4 in specification of hindlimb identity. Science 283 (1999) 1736-1739
33. Lynch M., and Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 290 (2000) 1151-1155
34. Manni L., et al. Neurogenic and non-neurogenic placodes in ascidians. J. Exp. Zool., B Mol. Dev. Evol. 302 (2004) 483-504
35. Marcil A., Dumontier E., Chamberland M., Camper S.A., and Drouin J. Pitx1 and Pitx2 are required for development of hindlimb buds. Development 130 (2003) 45-55
36. Mazet F., Hutt J.A., Milloz J., Millard J., Graham A., and Shimeld S.M. Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes. Dev. Biol. 282 (2005) 494-508
37. Meijlink F., Beverdam A., Brouwer A., Oosterveen T.C., and Berge D.T. Vertebrate aristaless-related genes. Int. J. Dev. Biol. 43 (1999) 651-663
38. Messmer K., Remington M.P., Skidmore F., and Fishman P.S. Induction of tyrosine hydroxylase expression by the transcription factor Pitx3. Int. J. Dev. Neurosci. 25 (2007) 29-37
39. Nobrega M.A., Ovcharenko I., Afzal V., and Rubin E.M. Scanning human gene deserts for long-range enhancers. Science 302 (2003) 413
40. Northcutt R.G., and Gans C. The genesis of neural crest and epidermal placodes: a reinterpretation of vertebrate origins. Q. Rev. Biol. 58 (1983) 1-28
41. Nunes I., Tovmasian L.T., Silva R.M., Burke R.E., and Goff S.P. Pitx3 is required for development of substantia nigra dopaminergic neurons. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 4245-4250
42. Pennacchio L.A., et al. In vivo enhancer analysis of human conserved non-coding sequences. Nature 444 (2006) 499-502
43. Plouhinec J.L., Leconte L., Sauka-Spengler T., Bovolenta P., Mazan S., and Saule S. Comparative analysis of gnathostome Otx gene expression patterns in the developing eye: implications for the functional evolution of the multigene family. Dev. Biol. 278 (2005) 560-575
44. Pommereit D., Pieler T., and Hollemann T. Xpitx3: a member of the Rieg/Pitx gene family expressed during pituitary and lens formation in Xenopus laevis. Mech. Dev. 102 (2001) 255-257
45. Robinson-Rechavi M., Boussau B., and Laudet V. Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference. Mol. Biol. Evol. 21 (2004) 580-586
46. Schlosser G. Induction and specification of cranial placodes. Dev. Biol. 294 (2006) 303-351
47. Schlosser G., and Ahrens K. Molecular anatomy of placode development in Xenopus laevis. Dev. Biol. 271 (2004) 439-466
48. Schweickert A., Campione M., Steinbeisser H., and Blum M. Pitx2 isoforms: involvement of Pitx2c but not Pitx2a or Pitx2b in vertebrate left-right asymmetry. Mech. Dev. 90 (2000) 41-51
49. Schweickert A., Deissler K., Blum M., and Steinbeisser H. Pitx1 and Pitx2c are required for ectopic cement gland formation in Xenopus laevis. Genesis 30 (2001) 144-148
50. Schweickert A., Steinbeisser H., and Blum M. Differential gene expression of Xenopus Pitx1, Pitx2b and Pitx2c during cement gland, stomodeum and pituitary development. Mech. Dev. 107 (2001) 191-194
51. Semina E.V., et al. Cloning and characterization of a novel bicoid-related homeobox transcription factor gene, RIEG, involved in Rieger syndrome. Nat. Genet. 14 (1996) 392-399
52. Semina E.V., Reiter R.S., and Murray J.C. Isolation of a new homeobox gene belonging to the Pitx/Rieg family: expression during lens development and mapping to the aphakia region on mouse chromosome 19. Hum. Mol. Genet. 6 (1997) 2109-2116
53. Smidt M.P., et al. A homeodomain gene Ptx3 has highly restricted brain expression in mesencephalic dopaminergic neurons. Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 13305-13310
54. Smidt M.P., et al. Analysis of three Ptx2 splice variants on transcriptional activity and differential expression pattern in the brain. J. Neurochem. 75 (2000) 1818-1825
55. Suh H., Gage P.J., Drouin J., and Camper S.A. Pitx2 is required at multiple stages of pituitary organogenesis: pituitary primordium formation and cell specification. Development 129 (2002) 329-337
56. Szeto D.P., Ryan A.K., O'Connell S.M., and Rosenfeld M.G. P-OTX: a PIT-1-interacting homeodomain factor expressed during anterior pituitary gland development. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 7706-7710
57. Szeto D.P., et al. Role of the Bicoid-related homeodomain factor Pitx1 in specifying hindlimb morphogenesis and pituitary development. Genes Dev. 13 (1999) 484-494
58. Thermes V., et al. I-SceI meganuclease mediates highly efficient transgenesis in fish. Mech. Dev. 118 (2002) 91-98
59. Tremblay J.J., Lanctot C., and Drouin J. The pan-pituitary activator of transcription, Ptx1 (pituitary homeobox 1), acts in synergy with SF-1 and Pit1 and is an upstream regulator of the Lim-homeodomain gene Lim3/Lhx3. Mol. Endocrinol. 12 (1998) 428-441
60. Tremblay J.J., Goodyer C.G., and Drouin J. Transcriptional properties of Ptx1 and Ptx2 isoforms. Neuroendocrinology 71 (2000) 277-286
61. Wittbrodt J., Shima A., and Schartl M. Medaka-a model organism from the far East. Nat. Rev. Genet. 3 (2002) 53-64
62. Woods I.G., et al. The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res. 15 (2005) 1307-1314
63. Yamamoto T. Medaka (killifish) Biology and Strains (1975), Keigaku, Tokyo
64. Yoshioka H., et al. Pitx2, a bicoid-type homeobox gene, is involved in a lefty-signaling pathway in determination of left-right asymmetry. Cell 94 (1998) 299-305