Fourier transform infrared characterization of a CuB-nitrosyl complex in cytochrome ba3 from Thermus thermophilus: Relevance to NO reductase activity in heme-copper terminal oxidases

Journal of the American Chemical Society

Volumn 129, Issue 48, 2007, Pages 14952-14958

  Hayashi, Takahiro ^b   Lin, I Jin ^b   Chen, Ying ^a   Fee, James A ^a   Moënne Loccoz, Pierre ^b  

^a OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COPPER; ELECTRONS; FOURIER TRANSFORM INFRARED SPECTROSCOPY; INFRARED RADIATION; NITRIC OXIDE; PROTEINS;

NITROUS OXIDE; OXIDASES; THERMUS THERMOPHILUS;

COPPER COMPOUNDS;

COPPER; CYTOCHROME B; HEME; NITRIC OXIDE REDUCTASE; OXIDOREDUCTASE;

ARTICLE; CATALYSIS; COMPLEX FORMATION; CONTROLLED STUDY; ELECTRON SPIN RESONANCE; ENZYME ACTIVITY; INFRARED SPECTROSCOPY; NONHUMAN; PHOTOLYSIS; REDUCTION; THERMUS THERMOPHILUS;

CYTOCHROME B GROUP; ELECTRON TRANSPORT COMPLEX IV; HEME; OXIDOREDUCTASES; PROTEIN BINDING; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; THERMUS THERMOPHILUS;

EID: 36849009272     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja074600a     Document Type: Article

References (66)

1. Lissenden, S.; Mohan, S.; Overton, T.; Regan, T.; Crooke, H.; Cardinale, J. A.; Householder, T. C.; Adams, P.; O'Conner, C. D.; Clark, V. L.; Smith, H.; Cole, J. A. Mol. Microbiol. 2000, 37, 839-855.
2. Householder, T. C.; Fozo, E. M.; Cardinale, J. A.; Clark, V. L. Infect. Immun. 2000, 68, 5241-5246.
3. Anjum, M. F.; Stevanin, T. M.; Read, R. C.; Moir, J. W. J. Bacteriol. 2002, 184, 2987-2993.
4. Castresana, J.; Lubben, M.; Saraste, M.; Higgins, D. G. EMBO J. 1994, 13, 2516-2525.
5. van der Oost, J.; de Boer, A. P.; de Gier, J. W.; Zumft, W. G.; Stouthamer, A. H.; van Spanning, R. J. FEMS Microbiol. Lett. 1994, 121, 1-9.
6. Zumft, W. G.; Braun, C.; Cuypers, H. Eur. J. Biochem. 1994, 219, 481-490.
7. Heiss, B.; Frunzke, K.; Zumft, W. G. J. Bacteriol. 1989, 171, 3288-3297.
8. Averill, B. A. Chem. Rev. 1996, 96, 2951-2965.
9. Wasser, I. M.; de Vries, S.; Moënne-Loccoz, P.; Schroder, I.; Karlin, K. D. Chem. Rev. 2002, 102, 1201-1234.
10. Zumft, W. G. J. Inorg. Biochem. 2005, 99, 194-215.
11. Moënne-Loccoz, P. Nat. Prod. Rep. 2007, 24, 610-620.
12. Fujiwara, T.; Fukumori, Y. J. Bacteriol. 1996, 178, 1866-1871.
13. Giuffre, A.; Stubauer, G.; Sarti, P.; Brunori, M.; Zumft, W. G.; Buse, G.; Soulimane, T. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 14718-14723.
14. Pinakoulaki, E.; Ohta, T.; Soulimane, T.; Kitagawa, T.; Varotsis, C. J. Am. Chem. Soc. 2005, 127, 15161-15167.
15. Blomberg, M. L.; Blomberg, M. R. A.; Siegbahn, P. E. M. Biochim. Biophys. Acta 2006, 1757, 31-46.
16. Ohta, T.; Kitagawa, T.; Varotsis, C. Inorg. Chem. 2006, 45, 3187-3190.
17. Enemark, J. H.; Feltham, R. D. Coord. Chem. Rev. 1974, 13, 339-406.
18. Pilet, E.; Nitschke, W.; Rappaport, F.; Soulimane, T.; Lambry, J. C.; Liebl, U.; Vos, M. H. Biochemistry 2004, 43, 14118-14127.
19. Ruggiero, C. E.; Carrier, S. M.; Antholine, W. E.; Whittaker, J. W.; Cramer, C. J.; Tolman, W. B. J. Am. Chem. Soc. 1993, 115, 11285-11298.
20. Zhao, X. J.; Sampath, V.; Caughey, W. S. Biochem. Biophys. Res. Commun. 1994, 204, 537-543.
21. Chen, Y.; Hunsicker-Wang, L.; Pacoma, R. L.; Luna, E.; Fee, J. A. Protein Expression Purif. 2005, 40, 299-318.
22. Reddy, K. S.; Angiolillo, P. J.; Wright, W. W.; Laberge, M.; Vanderkooi, J. M. Biochemistry 1996, 35, 12820-12830.
23. Yonetani, T.; Yamamoto, H.; Erman, J. E.; Leigh, J. S., Jr.; Reed, G. H. J. Biol. Chem. 1972, 247, 2447-2455.
24. Rein, H.; Ristau, O.; Scheler, W. FEBS Lett. 1972, 24, 24-26.
25. Wayland, B. B.; Olson, L. W. J. Am. Chem. Soc. 1974, 96, 6037-6041.
26. Szabo, A.; Perutz, M. F. Biochemistry 1976, 15, 4427-4428.
27. Hille, R.; Olson, J. S.; Palmer, G. J. Biol. Chem. 1979, 254, 12110-12120.
28. Pearce, L. L.; Bominaar, E. L.; Hill, B. C.; Peterson, J. J. Biol. Chem. 2003, 278, 52139-52145.
29. Pilet, E.; Nitschke, W.; Liebl, U.; Vos, M. H. Biochim. Biophys. Acta 2007, 1767, 387-392.
30. Miller, L. M.; Pedraza, A. J.; Chance, M. R. Biochemistry 1997, 36, 12199-12207.
31. Dyer, R. B.; Einarsdottir, O.; Killough, P. K.; Lopez-Garriga, J. J.; Woodruff, W. H. J. Am. Chem. Soc. 1989, 111, 7657-7659.
32. Einarsdottir, O.; Killough, P. M.; Fee, J. A.; Woodruff, W. H. J. Biol. Chem. 1989, 264, 2405-2408.
33. Yoshida, S.; Hori, H.; Orii, Y. J. Biochem. (Tokyo) 1980, 88, 1623-1627.
34. Boelens, R.; Rademaker, H.; Pel, R.; Wever, R. Biochim. Biophys. Acta 1982, 679, 84-94.
35. Oertling, W. A.; Surerus, K. K.; Einarsdottir, O.; Fee, J. A.; Dyer, R. B.; Woodruff, W. H. Biochemistry 1994, 33, 3128-3141.
36. Gerscher, S.; Hildebrandt, P.; Buse, G.; Soulimane, T. Biospectroscopy 1999, 5, S53-63.
37. -1, minor changes in this region are not discussed.
38. -1 can be reliably measured when two spectra are collected successively with no modification of the optical alignment and the spectrograph settings.
39. Findsen, E. W.; Centeno, J.; Babcock, G. T.; Ondrias, M. R. J. Am. Chem. Soc. 1987, 109, 5367-5372.
40. Lou, B. S.; Larsen, R. W.; Chan, S. I.; Ondrias, M. R. J. Am. Chem. Soc. 1993, 115, 403-407.
41. Kitagawa, T., Heme protein structure and the iron-histidine stretching mode. In Biological applications of Raman spectroscopy. Vol. 3. Resonance Raman spectra of hemes and metalloproteins; Spiro, T. G., Ed.; John Wiley & Sons: New York, 1988; Vol. 3, pp 97-131.
42. Blokzijl-Homan, M. F.; van Gelder, B. F. Biochim. Biophys. Acta 1971, 234, 493-498.
43. Stevens, T. H.; Brudvig, G. W.; Bocian, D. F.; Chan, S. I. Proc. Natl. Acad. Sci. U.S.A. 1979, 76, 3320-3324.
44. Brudvig, G. W.; Stevens, T. H.; Chan, S. I. Biochemistry 1980, 19, 5275-5285.
45. Mascarenhas, R.; Wei, Y. H.; Scholes, C. P.; King, T. E. J. Biol. Chem. 1983, 258, 5348-5351.
46. Blackmore, R. S.; Greenwood, C.; Gibson, Q. H. J. Biol. Chem. 1991, 266, 19245-19249.
47. Vos, M. H.; Lipowski, G.; Lambry, J. C.; Martin, J. L.; Liebl, U. Biochemistry 2001, 40, 7806-7811.
48. Schneider, J. L.; Carrier, S. M.; Ruggiero, C. E.; Young, V. G., Jr.; Tolman, W. B. J. Am. Chem. Soc. 1998, 120, 11408-11418.
49. Nakamoto, K. Infrared and Raman spectroscopy of inorganic and coordination compounds, 5th ed.; John Wiley and Sons, Inc.: New York, 1997; Vols. A, B.
50. Coppens, P.; Novozhilova, I.; Kovalevsky, A. Chem. Rev. 2002, 102, 861-883.
51. Novozhilova, I. V.; Coppens, P.; Lee, J.; Richter-Addo, G. B.; Bagley, K. A. J. Am. Chem. Soc. 2006, 128, 2093-2104.
52. Fomitchev, D. V.; Coppens, P. Inorg. Chem. 1996, 35, 7021-7026.
53. Fomitchev, D. V.; Coppens, P.; Li, T. S.; Bagley, K. A.; Chen, L.; Richter-Addo, G. B. J. Chem. Soc., Chem. Commun. 1999, 2013-2014.
54. Cheng, L.; Novozhilova, I.; Kim, C.; Kovalevsky, A.; Bagley, K. A.; Coppens, P.; Richter-Addo, G. B. J. Am. Chem. Soc. 2000, 122, 7142-7143.
55. Tocheva, E. I.; Rosell, F. I.; Mauk, A. G.; Murphy, M. E. P. Science 2004, 304, 867-870.
56. Antonyuk, S. V.; Strange, R. W.; Sawers, G.; Eady, R. R.; Hasnain, S. S. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 12041-12046.
57. Wasbotten, I. H.; Ghosh, A. J. Am. Chem. Soc. 2005, 127, 15384-15385.
58. Brown, C. A.; Pavlosky, M. A.; Westre, T. E.; Zhang, Y.; Hedman, B.; Hodgson, K. O.; Solomon, E. I. J. Am. Chem. Soc. 1995, 117, 715-732.
59. Moënne-Loccoz, P.; Richter, O.-M. H.; Huang, H. W.; Wasser, I. M.; Ghiladi, R. A.; Karlin, K. D.; de Vries, S. J. Am. Chem. Soc. 2000, 122, 9344-9345.
60. Soulimane, T.; Buse, G.; Bourenkov, G. P.; Bartunik, H. D.; Huber, R.; Than, M. E. EMBO J. 2000, 19, 1766-1776.
61. Hunsicker-Wang, L. M.; Pacoma, R. L.; Chen, Y.; Fee, J. A.; Stout, C. D. Acta Crystallogr. 2005, D61, 340-343.
62. Yoshikawa, S.; Shinzawa-Itoh, K.; Nakashima, R.; Yaono, R.; Yamashita, E.; Inoue, N.; Yao, M.; Fei, M. J.; Libeu, C. P.; Mizushima, T.; Yamaguchi, H.; Tomizaki, T.; Tsukihara, T. Science 1998, 280, 1723-1729.
63. Iwata, S.; Ostermeier, C.; Ludwig, B.; Michel, H. Nature 1995, 376, 660-669.
64. Ostermeier, C.; Harrenga, A.; Ermler, U.; Michel, H. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 10547-10553.
65. Pinakoulaki, E.; Stavrakis, S.; Urbani, A.; Varotsis, C. J. Am. Chem. Soc. 2002, 124, 9378-9379.
66. Kumita, H.; Matsuura, K.; Hino, T.; Takahashi, S.; Hori, H.; Fukumori, Y.; Morishima, I.; Shiro, Y. J. Biol. Chem. 2004, 279, 55247-55254.