Accuracy of pairwise methods in the reconstruction of family relationships, using molecular information from turbot (Scophthalmus maximus)

Aquaculture

Volumn 273, Issue 4, 2007, Pages 434-442

  Rodríguez Ramilo, Silvia Teresa ^a   Toro, Miguel Ángel ^a   Martínez, Paulino ^b   Castro, Jaime ^b   Bouza, Carmen ^b   Fernández, Jesús ^a  

^a INIA   (Spain)

^b UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

Coancestry estimator; Microsatellites; Molecular marker; Pairwise; Pedigree reconstruction; Scophthalmus maximus

Indexed keywords

ACCURACY ASSESSMENT; ANCESTRY; ESTIMATION METHOD; FISH CULTURE; FLATFISH; GENEALOGY; GENETIC MARKER; POPULATION STRUCTURE; RECONSTRUCTION;

SCOPHTHALMIDAE; SCOPHTHALMUS MAXIMUS;

EID: 36649022003     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2007.10.036     Document Type: Article

References (20)

1. Bouza C., Presa P., Castro J., Sánchez L., and Martínez P. Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes. Canadian Journal of Fisheries and Aquatic Sciences 59 (2002) 1460-1473
2. Bouza, C., Hermida, M., Pardo, B.G., Fernández, C., Fortes, G.G., Castro, J., Sánchez, L., Presa, P., Pérez, M., Sanjuan, A., de Carlos, A., Álvarez-Dios, J.A., Ezcurra, S., Cal, R.M., Piferrer, F., Martínez, P., in press. A microsatellite genetic map of the turbot (Scophthalmus maximus). Genetics 177 (4).
3. Butler K., Field C., Herbinger C.M., and Smith B.R. Accuracy, efficiency and robustness of four algorithms allowing full sibship reconstruction from DNA marker data. Molecular Ecology 13 (2004) 1589-1600
4. Castro J., Bouza C., Presa P., Pino-Querido A., Riaza A., Ferreiro I., Sánchez L., and Martínez P. Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci. Aquaculture 242 (2004) 119-135
5. Castro J., Pino A., Hermida M., Bouza C., Riaza A., Ferreiro I., Sanchez L., and Martinez P. A microsatellite marker tool for parentage analysis in Senegal sole (Solea senegalensis): genotyping errors, null alleles and conformance to theoretical assumptions. Aquaculture 261 (2006) 1194-1203
6. Fernández J., and Toro M.A. A new method to estimate relatedness from molecular markers. Molecular Ecology 15 (2006) 1657-1667
7. Hardy O.J., and Vekemans X. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes 2 (2002) 618-620
8. Jackson T.R., Martin-Robichaud D.J., and Reith M.E. Application of DNA markers to the management of Atlantic halibut (Hippoglossus hippoglossus) broodstock. Aquaculture 220 (2003) 245-259
9. Lynch M., and Ritland K. Estimation of pairwise relatedness with molecular markers. Genetics 152 (1999) 1753-1766
10. Lynch M., and Walsh B. Genetics and Analysis of Quantitative Traits (1998), Sinauer Associates, Sunderland, MA
11. Malécot G. Les Mathématiques de l'hérédité (1948), Masson, Paris
12. Marshall T.C., Slate J., Kruuk L.E.B., and Pemberton J.M. Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 7 (1998) 639-655
13. Queller D.C., and Goodnight K.F. Estimating relatedness using molecular markers. Evolution 43 (1989) 258-275
14. Ritland K. Estimators for pairwise relatedness and individual inbreeding coefficients. Genetical Research 67 (1996) 175-185
15. Sekino M., Sugaya T., Hara M., and Taniguchi N. Relatedness inferred from microsatellite genotypes as a tool for broodstock management of Japanese flounder Paralichthys olivaceus. Aquaculture 233 (2004) 163-172
16. Smith B.R., Herbinger C.M., and Merry H.R. Accurate partition of individuals into full-sib families from genetic data without parental information. Genetics 158 (2001) 1329-1338
17. Thomas S.C., and Hill W.G. Estimating quantitative genetic parameters using sibships reconstructed from marker data. Genetics 155 (2000) 1961-1972
18. Thomas S.C., and Hill W.G. Sibship reconstruction in hierarchical population structures using Markov chain Monte Carlo techniques. Genetical Research 79 (2002) 227-234
19. Toro M., Barragán C., Óvilo C., Rodrigáñez J., Rodríguez C., and Silió L. Estimation of coancestry in Iberian pigs using molecular markers. Conservation Genetics 3 (2002) 309-320
20. Wang J.L. An estimator for pairwise relatedness using molecular markers. Genetics 160 (2002) 1203-1215