Application of DNA markers to the management of Atlantic halibut (Hippoglossus hippoglossus) broodstock

Aquaculture

Volumn 220, Issue 1-4, 2003, Pages 245-259

  Jackson, Timothy R ^a,b   Martin Robichaud, D J ^a   Reith, Michael E ^b  

^a ST ANDREWS BIOLOGICAL STATION   (Canada)

^b NATIONAL RESEARCH COUNCIL CANADA   (Canada)

Author keywords

Atlantic halibut; Broodstock; Genetic variation; Hippoglossus hippoglossus; Microsatellite; Pedigree

Indexed keywords

BROOD STOCK; FISH CULTURE; FLATFISH; GENETIC MARKER; GENETIC VARIATION;

CANADA;

HIPPOGLOSSUS HIPPOGLOSSUS;

EID: 0037437009     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0044-8486(02)00622-1     Document Type: Article

References (36)

1. Brooker, A.L., Cook, D., Bentzen, P., Wright, J.M., Doyle, R., 1994. Organization of microsatellites differs between mammals and cold-water teleost fishes. Can. J. Fish. Aquat. Sci. 51, 1959-1966.
2. Cornuet, J.M., Luikart, G., 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144, 2001-2014.
3. Crow, J.F., Kimura, M., 1970. An Introduction to Population Genetics Theory. Harper and Row, New York. 591 pp.
4. Danzmann, R.G., 1997. PROBMAX: a computer program for assigning unknown parentage in pedigree analysis from known genotypic pools of parents and progeny. J. Heredity 88, 333.
5. DeWoody, J.A., Avise, J.C., 2000. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol. 56, 461-473.
6. Falconer, D.S., 1989. Introduction to Quantitative Genetics, 3rd ed. Longman, Harlow, Essex, England.
7. Fishback, A.G., 1999. Genetic and environmental influences on the spawning time and progeny growth of hatchery rainbow trout. MSc Thesis, University of Guelph, Guelph, Ontario, Canada.
8. Fishback, A.G., Danzmann, R.G., Sakamoto, T., Ferguson, M.M., 1999. Optimization of semi-automated microsatellite multiplex polymerase chain reaction systems for rainbow trout (Oncorhynchus mykiss). Aquaculture 172, 247-254.
9. Gjedrem, T., 2000. Genetic improvement of cold-water fish species. Aquac. Res. 31, 25-33.
10. Gjerde, B., Gunnes, K., Gjedrem, T., 1983. Effect of inbreeding on survival and growth in rainbow trout. Aquaculture 34, 327-332.
11. Goudet, J., Raymond, M., De Meeüs, T., Rousset, F., 1996. Testing differentiation in diploid populations. Genetics 144, 1933-1940.
12. Hansen, M.M., Nielsen, E.E., Ruzzante, D.E., Bouza, C., Mensberg, K.-L.D., 2000. Genetic monitoring of supportive breeding in brown trout (Salmo trutta L.), using microsatellite DNA markers. Can. J. Fish. Aquat. Sci. 57, 2130-2139.
13. Herbinger, C.M., Doyle, R.W., Pitman, E.R., Paquet, D., Mesa, K.A., Morris, D.B., Wright, J.M., Cook, D., 1995. DNA fingerprint based analysis of paternal and maternal effects on offspring growth and survival in communally reared rainbow trout. Aquaculture 137, 245-256.
14. Hoare, R., Hovland, H., Langston, A.L., Imsland, A., Stefansson, S.O., Mulcahy, M., Wergeland, H.I., 2002. Susceptibility of three different strains of juvenile Atlantic halibut (Hippoglossus hippoglossus L.) cultured at two different temperatures to Vibrio anguillarum and temperature effect on antibody response. Fish Shellfish Immunol. 13, 111-123.
15. Imsland, A.K., Jonassen, T.M., Langston, A., Hoare, R., Wergeland, H., Fitzgerald, R., Mulcahy, M., Stefansson, S.O., 2002. The interrelation of growth and disease resistance of different populations of juvenile Atlantic halibut (Hippoglossus hippoglossus L.). Aquaculture 204, 167-177.
16. Jonassen, T.M., Imsland, A.K., Fitzgerald, R., Bonga, S.W., Ham, E.V., Nædval, G., Stefánsson, M.O., Stefansson, S.O., 2000. Geographic variation in growth and food conversion efficiency of juvenile Atlantic halibut related to latitude. J. Fish Biol. 56, 279-294.
17. Kincaid, H.L., 1976. Effects of inbreeding on rainbow trout populations. Trans. Am. Fish. Soc. 105, 273-280.
18. Lande, R., Barrowclough, G.F., 1987. Effective population size, genetic variation, and their use in population management. In: Soule, M.E. (Ed.), Viable Populations for Conservation. University Press, Cambridge, pp. 87-123.
19. Martin-Robichaud, D.J., Rommens, M., 2001. Assessment of sex and evaluation of ovarian maturation of fish using ultrasonography. Aquac. Res. 32, 113-120.
20. McGowan, C., Reith, M.E., 1999. Polymorphic microsatellite markers for Atlantic halibut, Hippoglossus hippoglossus. Mol. Ecol. 8, 1761-1763.
21. Nei, M., 1987. Molecular Evolutionary Genetics. Columbia Univ. Press, New York. 512 pp.
22. Norris, A.T., Bradley, D.G., Cunningham, E.P., 1999. Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations. Aquaculture 180, 247-264.
23. Norris, A.T., Bradley, D.G., Cunningham, E.P., 2000. Parentage and relatedness determination in farmed Atlantic salmon (Salmo salar) using microsatellite markers. Aquaculture 182, 73-83.
24. Olsen, J.B., Busack, C., Britt, J., Bentzen, P., 2001. The aunt and uncle effect: an empirical evaluation of the confounding influence of full sibs of parents on pedigree reconstruction. J. Heredity 92, 243-247.
25. Ott, J., 1992. Strategies for characterizing highly polymorphic markers in human gene mapping. Am. J. Hum. Genet. 51, 283-290.
26. Pante, M.A.R., Gjerde, B., McMillan, I., 2001. Effect of inbreeding on body weight at harvest in rainbow trout, Oncorhynchus mykiss. Aquaculture 192, 201-211.
27. Park, S.D.E., 2001. Trypanotolerance in West African cattle and the population genetic effects of selection. PhD Thesis, University of Dublin.
28. Perez-Enriquez, R., Takagi, M., Taniguchi, N., 1999. Genetic variability and pedigree tracing of a hatchery-reared stock of red sea bream (Pagrus major) used for stock enhancement, based on microsatellite DNA markers. Aquaculture 173, 413-423.
29. Raymond, M., Rousset, F., 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Heredity 86, 248-249.
30. Reed, D.H., Frankham, R., 2001. How closely correlated are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution 55, 1095-1103.
31. Rice, W.R., 1989. Analyzing tables of statistical tests. Evolution 43, 223-225.
32. Smith, C., 1998. Introduction: current animal breeding. In: Clark, A.J. (Ed.), Animal Breeding: Technology for the 21st Century. Harwood Academic Publishers, Amsterdam, pp. 1-10.
33. Smith, B.R., Herbinger, C.M., Merry, H.R., 2001. Accurate partition of individuals into full-sib families from genetic data without parental information. Genetics 158, 1329-1338.
34. Sokal, R.R., Rohlf, F.J., 1981. Biometry, 2nd ed. Freeman, New York. 859 pp.
35. Tautz, D., 1989. Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 17, 6463-6471.
36. Weir, B.S., 1996. Genetic Data Analysis II. Sinauer Associates, Sunderland. 445 pp.