-
1
-
-
0026006258
-
Nuclear transport of influenza virus ribonucleoproteins: The viral matrix protein (M1) promotes export and inhibits import
-
Martin, K., and A. Helenius. 1991. Nuclear transport of influenza virus ribonucleoproteins: the viral matrix protein (M1) promotes export and inhibits import. Cell. 67:117-130.
-
(1991)
Cell
, vol.67
, pp. 117-130
-
-
Martin, K.1
Helenius, A.2
-
2
-
-
0026664025
-
Unpacking the incoming influenza virus
-
Helenius, A. 1992. Unpacking the incoming influenza virus. Cell. 69:577-578.
-
(1992)
Cell
, vol.69
, pp. 577-578
-
-
Helenius, A.1
-
3
-
-
0026008031
-
Structural characteristics of the M2 protein of influenza A viruses: Evidence that it forms a tetrameric channel
-
Sugrue, R. J., and A. J. Hay. 1991. Structural characteristics of the M2 protein of influenza A viruses: evidence that it forms a tetrameric channel. Virology. 180:617-624.
-
(1991)
Virology
, vol.180
, pp. 617-624
-
-
Sugrue, R.J.1
Hay, A.J.2
-
4
-
-
0028177960
-
Influenza virus M2 protein ion channel activity stabilizes the native form of fowl plague virus hemagglutinin during intracellular transport
-
Takeuchi, K., and R. A. Lamb. 1994. Influenza virus M2 protein ion channel activity stabilizes the native form of fowl plague virus hemagglutinin during intracellular transport. J. Virol. 68:911-919.
-
(1994)
J. Virol
, vol.68
, pp. 911-919
-
-
Takeuchi, K.1
Lamb, R.A.2
-
5
-
-
0026787707
-
Maturation of influenza A virus hemagglutinin - estimates of the pH encountered during transport and its regulation by the M2 protein
-
Grambas, S., and A. J. Hay. 1992. Maturation of influenza A virus hemagglutinin - estimates of the pH encountered during transport and its regulation by the M2 protein. Virology. 190:11-18.
-
(1992)
Virology
, vol.190
, pp. 11-18
-
-
Grambas, S.1
Hay, A.J.2
-
6
-
-
0029816765
-
Selective proton permeability and pH regulation of the influenza virus M2 channel expressed in mouse erythroleukaemia cells
-
Chizhmakov, I. V., F. M. Geraghty, D. C. Ogden, A. Hayhurst, M. Antoniou, and A. J. Hay. 1996. Selective proton permeability and pH regulation of the influenza virus M2 channel expressed in mouse erythroleukaemia cells. J. Physiol. 494:329-336.
-
(1996)
J. Physiol
, vol.494
, pp. 329-336
-
-
Chizhmakov, I.V.1
Geraghty, F.M.2
Ogden, D.C.3
Hayhurst, A.4
Antoniou, M.5
Hay, A.J.6
-
7
-
-
0030061323
-
Ion selectivity and activation of the M2 ion channel of influenza virus
-
Shimbo, K., D. L. Brassard, R. A. Lamb, and L. H. Pinto. 1996. Ion selectivity and activation of the M2 ion channel of influenza virus. Biophys. J. 70:1335-1346.
-
(1996)
Biophys. J
, vol.70
, pp. 1335-1346
-
-
Shimbo, K.1
Brassard, D.L.2
Lamb, R.A.3
Pinto, L.H.4
-
8
-
-
0027963402
-
Neutron diffraction reveals the site of amantadine blockade in the influenza A M2 ion channel
-
Duff, K. C., P. J. Gilchrist, A. M. Saxena, and J. P. Bradshaw. 1994. Neutron diffraction reveals the site of amantadine blockade in the influenza A M2 ion channel. Virology. 202:287-293.
-
(1994)
Virology
, vol.202
, pp. 287-293
-
-
Duff, K.C.1
Gilchrist, P.J.2
Saxena, A.M.3
Bradshaw, J.P.4
-
9
-
-
0029038155
-
Understanding the mechanism of action of the anti-influenza virus drug amantadine
-
Pinto, L. H., and R. A. Lamb. 1995. Understanding the mechanism of action of the anti-influenza virus drug amantadine. Trends Microbiol. 3:271.
-
(1995)
Trends Microbiol
, vol.3
, pp. 271
-
-
Pinto, L.H.1
Lamb, R.A.2
-
10
-
-
34250334756
-
Backbone structure of the amantadine-blocked trans-membrane domain M2 proton channel from influenza A virus
-
Hu, J., T. Asbury, S. Achuthan, C. Li, R. Bertram, J. R. Quine, R. Fu, and T. A. Cross. 2007. Backbone structure of the amantadine-blocked trans-membrane domain M2 proton channel from influenza A virus. Biophys. J. 92:4335-4343.
-
(2007)
Biophys. J
, vol.92
, pp. 4335-4343
-
-
Hu, J.1
Asbury, T.2
Achuthan, S.3
Li, C.4
Bertram, R.5
Quine, J.R.6
Fu, R.7
Cross, T.A.8
-
12
-
-
0026612385
-
Influenza virus M2 protein has ion channel activity
-
Pinto, L. H., L. J. Holsinger, and R. A. Lamb. 1992. Influenza virus M2 protein has ion channel activity. Cell. 69:517-528.
-
(1992)
Cell
, vol.69
, pp. 517-528
-
-
Pinto, L.H.1
Holsinger, L.J.2
Lamb, R.A.3
-
13
-
-
0028980598
-
Activation of the M2 ion channel of influenza virus: A role for the transmembrane domain histidine residue
-
Wang, C., R. A. Lamb, and L. H. Pinto. 1995. Activation of the M2 ion channel of influenza virus: a role for the transmembrane domain histidine residue. Biophys. J. 69:1363-1371.
-
(1995)
Biophys. J
, vol.69
, pp. 1363-1371
-
-
Wang, C.1
Lamb, R.A.2
Pinto, L.H.3
-
14
-
-
0037027306
-
+ channel helical bundle combining precise orientational and distance restraints from solid state NMR
-
+ channel helical bundle combining precise orientational and distance restraints from solid state NMR. Biochemistry. 41:13170-13177.
-
(2002)
Biochemistry
, vol.41
, pp. 13170-13177
-
-
Nishimura, K.1
Kim, S.2
Zhang, L.3
Cross, T.A.4
-
15
-
-
0142210121
-
Initial structural and dynamic characterization of the M2 protein transmembrane and amphipathic helices in lipid bilayers
-
Tian, C., P. F. Gao, L. H. Pinto, R. A. Lamb, and T. A. Cross. 2003. Initial structural and dynamic characterization of the M2 protein transmembrane and amphipathic helices in lipid bilayers. Prot. Sci. 12: 2597-2605.
-
(2003)
Prot. Sci
, vol.12
, pp. 2597-2605
-
-
Tian, C.1
Gao, P.F.2
Pinto, L.H.3
Lamb, R.A.4
Cross, T.A.5
-
16
-
-
0036157061
-
C-Deuterated alanine: A new label to study membrane protein structure using site-specific infrared dichroism
-
Torres, J., and I. T. Arkin. 2002. C-Deuterated alanine: a new label to study membrane protein structure using site-specific infrared dichroism. Biophys. J. 82:1068-1075.
-
(2002)
Biophys. J
, vol.82
, pp. 1068-1075
-
-
Torres, J.1
Arkin, I.T.2
-
17
-
-
0033636640
-
Use of a single glycine residue to determine the tilt and orientation of a transmembrane helix. A new structural label for infrared spectroscopy
-
Torres, J., A. Kukol, and I. T. Arkin. 2000. Use of a single glycine residue to determine the tilt and orientation of a transmembrane helix. A new structural label for infrared spectroscopy. Biophys. J. 79:3139-3143.
-
(2000)
Biophys. J
, vol.79
, pp. 3139-3143
-
-
Torres, J.1
Kukol, A.2
Arkin, I.T.3
-
19
-
-
0035918599
-
Protonation of histidine and histidine-tryptophan interaction in the activation of the M2 ion channel from influenza A virus
-
Okada, A., T. Miura, and H. Takeuchi. 2001. Protonation of histidine and histidine-tryptophan interaction in the activation of the M2 ion channel from influenza A virus. Biochemistry. 40:6053-6060.
-
(2001)
Biochemistry
, vol.40
, pp. 6053-6060
-
-
Okada, A.1
Miura, T.2
Takeuchi, H.3
-
20
-
-
0030803839
-
The influenza A virus M2 channel: A molecular modeling and simulation study
-
Sansom, M. S. P., I. D. Kerr, G. R. Smith, and H. S. Son. 1997. The influenza A virus M2 channel: a molecular modeling and simulation study. Virology. 233:163-173.
-
(1997)
Virology
, vol.233
, pp. 163-173
-
-
Sansom, M.S.P.1
Kerr, I.D.2
Smith, G.R.3
Son, H.S.4
-
21
-
-
0034030929
-
Exploring models of the influenza A M2 channel: MD simulations in a phospholipid bilayer
-
Forrest, L. R., A. Kukol, I. T. Arkin, D. P. Tieleman, and M. S. P. Sansom. 2000. Exploring models of the influenza A M2 channel: MD simulations in a phospholipid bilayer. Biophys. J. 78:55-69.
-
(2000)
Biophys. J
, vol.78
, pp. 55-69
-
-
Forrest, L.R.1
Kukol, A.2
Arkin, I.T.3
Tieleman, D.P.4
Sansom, M.S.P.5
-
22
-
-
28844493428
-
+ channel: The gating mechanism of influenza A M2
-
+ channel: the gating mechanism of influenza A M2. Structure. 13:1789-1798.
-
(2005)
Structure
, vol.13
, pp. 1789-1798
-
-
Kass, I.1
Arkin, I.T.2
-
23
-
-
0036789499
-
Molecular dynamics simulation of proton transport through the influenza A virus M2 channel
-
Smondyrev, M., and G. A. Voth. 2002. Molecular dynamics simulation of proton transport through the influenza A virus M2 channel. Biophys. J. 83:1987-1996.
-
(2002)
Biophys. J
, vol.83
, pp. 1987-1996
-
-
Smondyrev, M.1
Voth, G.A.2
-
24
-
-
0042836529
-
Computational studies of proton transport through the M2 channel
-
Wu, Y., and G. A. Voth. 2003. Computational studies of proton transport through the M2 channel. FEBS Lett. 552:23-27.
-
(2003)
FEBS Lett
, vol.552
, pp. 23-27
-
-
Wu, Y.1
Voth, G.A.2
-
25
-
-
25844476272
-
A computational study of the closed and open states of the influenza A M2 proton channel
-
Wu, Y., and G. A. Voth. 2005. A computational study of the closed and open states of the influenza A M2 proton channel. Biophys. J. 89: 2402-2411.
-
(2005)
Biophys. J
, vol.89
, pp. 2402-2411
-
-
Wu, Y.1
Voth, G.A.2
-
26
-
-
0021893484
-
2 protein is an integral membrane protein expressed on the infected-cell surface
-
2 protein is an integral membrane protein expressed on the infected-cell surface. Cell. 40:627-633.
-
(1985)
Cell
, vol.40
, pp. 627-633
-
-
Lamb, R.A.1
Zebedee, S.L.2
Richardson, C.D.3
-
27
-
-
0026785994
-
The transmembrane domain of influenza A M2 protein forms amantadine-sensitive protein channels in planar lipid bilayers
-
Duff, K. C., and R. H. Ashley. 1992. The transmembrane domain of influenza A M2 protein forms amantadine-sensitive protein channels in planar lipid bilayers. Virology. 190:485-489.
-
(1992)
Virology
, vol.190
, pp. 485-489
-
-
Duff, K.C.1
Ashley, R.H.2
-
28
-
-
0028631914
-
Functional reconstitution in lipid vesicles of influenza virus M2 protein expressed by baculovirus: Evidence for proton transfer activity
-
Schroeder, C., C. M. Ford, S. A. Wharton, and A. J. Hay. 1994. Functional reconstitution in lipid vesicles of influenza virus M2 protein expressed by baculovirus: evidence for proton transfer activity. J. Gen. Virol. 75:3477-3484.
-
(1994)
J. Gen. Virol
, vol.75
, pp. 3477-3484
-
-
Schroeder, C.1
Ford, C.M.2
Wharton, S.A.3
Hay, A.J.4
-
29
-
-
0025923280
-
Influenza virus M2 integral membrane protein is a homotetramer stabilized by formation of disulfide bonds
-
Holsinger, L. J., and R. A. Lamb. 1991. Influenza virus M2 integral membrane protein is a homotetramer stabilized by formation of disulfide bonds. Virology. 183:32-43.
-
(1991)
Virology
, vol.183
, pp. 32-43
-
-
Holsinger, L.J.1
Lamb, R.A.2
-
31
-
-
0033073762
-
The influenza virus M2 ion channel protein. Probing the structure of the transmembrane domain in intact cells by using engineered disulfide cross-linking
-
Bauer, C. M., L. H. Pinto, T. A. Cross, and R. A. Lamb. 1999. The influenza virus M2 ion channel protein. Probing the structure of the transmembrane domain in intact cells by using engineered disulfide cross-linking. Virology. 254:196-209.
-
(1999)
Virology
, vol.254
, pp. 196-209
-
-
Bauer, C.M.1
Pinto, L.H.2
Cross, T.A.3
Lamb, R.A.4
-
32
-
-
0019446976
-
2) in H1N1 and H3N2 strains
-
2) in H1N1 and H3N2 strains. Virology. 112:746-751.
-
(1981)
Virology
, vol.112
, pp. 746-751
-
-
Lamb, R.A.1
Lai, C.-J.2
-
33
-
-
0027185716
-
Ion channel activity of influenza A virus M2 protein: Characterization of the amantadine block
-
Wang, C., K. Takeuchi, L. H. Pinto, and R. A. Lamb. 1993. Ion channel activity of influenza A virus M2 protein: characterization of the amantadine block. J. Virol. 67:5585-5594.
-
(1993)
J. Virol
, vol.67
, pp. 5585-5594
-
-
Wang, C.1
Takeuchi, K.2
Pinto, L.H.3
Lamb, R.A.4
-
35
-
-
0345598917
-
Use of thio-disulfide equilibria to measure the energetics of assembly of transmembrane helices in phospholipid bilayers
-
Cristian, L., J. D. Lear, and W. F. DeGrado. 2003. Use of thio-disulfide equilibria to measure the energetics of assembly of transmembrane helices in phospholipid bilayers. Proc. Natl. Acad. Sci. USA. 100: 14772-14777.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14772-14777
-
-
Cristian, L.1
Lear, J.D.2
DeGrado, W.F.3
-
36
-
-
15244348542
-
The conformation of the pore region of the M2 proton channel depends on lipid bilayer environment
-
Duong-Ly, K. C., V. Nanda, W. F. DeGrado, and K. P. Howard. 2005. The conformation of the pore region of the M2 proton channel depends on lipid bilayer environment. Prot. Sci. 14:856-861.
-
(2005)
Prot. Sci
, vol.14
, pp. 856-861
-
-
Duong-Ly, K.C.1
Nanda, V.2
DeGrado, W.F.3
Howard, K.P.4
-
37
-
-
0037379781
-
Voltage-gated proton channels and other proton transfer pathways
-
Decoursey, T. E. 2003. Voltage-gated proton channels and other proton transfer pathways. Physiol. Rev. 83:475-579.
-
(2003)
Physiol. Rev
, vol.83
, pp. 475-579
-
-
Decoursey, T.E.1
-
38
-
-
4444265755
-
Proton conductance of influenza virus M2 protein in planar lipid bilayers
-
Vijayvergiya, V., R. Wilson, A. Chorak, P. F. Gao, T. A. Cross, and D. D. Busath. 2004. Proton conductance of influenza virus M2 protein in planar lipid bilayers. Biophys. J. 87:1697-1704.
-
(2004)
Biophys. J
, vol.87
, pp. 1697-1704
-
-
Vijayvergiya, V.1
Wilson, R.2
Chorak, A.3
Gao, P.F.4
Cross, T.A.5
Busath, D.D.6
-
39
-
-
0037440103
-
Differences in conductance of M2 proton channels of two influenza viruses at low and high pH
-
Chizhmakov, I. V., D. C. Ogden, F. M. Geraghty, A. Hayhurst, A. Skinner, T. Betakova, and A. J. Hay. 2003. Differences in conductance of M2 proton channels of two influenza viruses at low and high pH. J. Physiol. 546:427-438.
-
(2003)
J. Physiol
, vol.546
, pp. 427-438
-
-
Chizhmakov, I.V.1
Ogden, D.C.2
Geraghty, F.M.3
Hayhurst, A.4
Skinner, A.5
Betakova, T.6
Hay, A.J.7
-
40
-
-
0042836535
-
Proton conduction through the M2 protein of the influenza A virus; a quantitative, mechanistic analysis of experimental data
-
Lear, J. D. 2003. Proton conduction through the M2 protein of the influenza A virus; a quantitative, mechanistic analysis of experimental data. FEBS Lett. 552:17-22.
-
(2003)
FEBS Lett
, vol.552
, pp. 17-22
-
-
Lear, J.D.1
-
41
-
-
0030881872
-
A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity
-
Pinto, L. H., G. R. Dieckmann, C. S. Gandhi, C. G. Papworth, J. Braman, M. A. Shaughnessy, J. D. Lear, R. A. Lamb, and W. F. Degrado. 1997. A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity. Proc. Natl. Acad. Sci. USA. 94:11301-11306.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11301-11306
-
-
Pinto, L.H.1
Dieckmann, G.R.2
Gandhi, C.S.3
Papworth, C.G.4
Braman, J.5
Shaughnessy, M.A.6
Lear, J.D.7
Lamb, R.A.8
Degrado, W.F.9
-
42
-
-
34249092919
-
Proton solvation and transport in aqueous and biomolecular systems: Insights from computer simulations
-
Swanson, J. M. J., C. M. Maupin, H. Chen, M. K. Petersen, J. Xu, Y. Wu, and G. A. Voth. 2007. Proton solvation and transport in aqueous and biomolecular systems: Insights from computer simulations. J. Phys. Chem. B. 111:4300-4314.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 4300-4314
-
-
Swanson, J.M.J.1
Maupin, C.M.2
Chen, H.3
Petersen, M.K.4
Xu, J.5
Wu, Y.6
Voth, G.A.7
-
43
-
-
11744384413
-
The Grotthuss mechanism
-
Agmon, N. 1995. The Grotthuss mechanism. Chem. Phys. Lett. 244:456-462.
-
(1995)
Chem. Phys. Lett
, vol.244
, pp. 456-462
-
-
Agmon, N.1
-
44
-
-
33646494326
-
Histidines, heart of the hydrogen ion channel from influenza A virus: Toward an understanding of conductance and proton selectivity
-
Hu, J., R. Fu, K. Nishimura, L. Zhang, H.-X. Zhou, D. D. Busath, V. Vijayvergiya, and T. A. Cross. 2006. Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity. Proc. Natl. Acad. Sci. USA. 103:6865-6870.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 6865-6870
-
-
Hu, J.1
Fu, R.2
Nishimura, K.3
Zhang, L.4
Zhou, H.-X.5
Busath, D.D.6
Vijayvergiya, V.7
Cross, T.A.8
-
45
-
-
0034640212
-
Two possible conducting states of the influenza A virus M2 ion channel
-
Zhong, Q., D. M. Newns, P. Pattnaik, J. D. Lear, and M. L. Klein. 2000. Two possible conducting states of the influenza A virus M2 ion channel. FEBS Lett. 473:195-198.
-
(2000)
FEBS Lett
, vol.473
, pp. 195-198
-
-
Zhong, Q.1
Newns, D.M.2
Pattnaik, P.3
Lear, J.D.4
Klein, M.L.5
-
46
-
-
14144251553
-
Sequence determinants of a transmembrane proton channel: An inverse relationship between stability and function
-
Stouffer, A. L., V. Nanda, J. D. Lear, and W. F. DeGrado. 2005. Sequence determinants of a transmembrane proton channel: an inverse relationship between stability and function. J. Mol. Biol. 347:169-179.
-
(2005)
J. Mol. Biol
, vol.347
, pp. 169-179
-
-
Stouffer, A.L.1
Nanda, V.2
Lear, J.D.3
DeGrado, W.F.4
-
47
-
-
0001213767
-
The computer simulation of proton transport in water
-
Schmitt, U. W., and G. A. Voth. 1999. The computer simulation of proton transport in water. J. Chem. Phys. 111:9361-9381.
-
(1999)
J. Chem. Phys
, vol.111
, pp. 9361-9381
-
-
Schmitt, U.W.1
Voth, G.A.2
-
48
-
-
0037159065
-
A second generation multistate empirical valence bond model for proton transport in aqueous systems
-
Day, T. J. F., A. V. Soudakov, M. Cuma, U. W. Schmitt, and G. A. Voth. 2002. A second generation multistate empirical valence bond model for proton transport in aqueous systems. J. Chem. Phys. 117:5839-5849.
-
(2002)
J. Chem. Phys
, vol.117
, pp. 5839-5849
-
-
Day, T.J.F.1
Soudakov, A.V.2
Cuma, M.3
Schmitt, U.W.4
Voth, G.A.5
-
49
-
-
36549077821
-
An improved multistate empirical valence bond model for aqueous proton solvation and transport
-
In press
-
Wu, Y., H. Chen, F. Wang, F. Paesani, and G. A. Voth. 2007. An improved multistate empirical valence bond model for aqueous proton solvation and transport. J. Phys. Chem. B. In press.
-
(2007)
J. Phys. Chem. B
-
-
Wu, Y.1
Chen, H.2
Wang, F.3
Paesani, F.4
Voth, G.A.5
-
50
-
-
18744381863
-
Computer simulation of explicit proton translocation in cytochrome c oxidase: The D-pathway
-
Xu, J., and G. A. Voth. 2005. Computer simulation of explicit proton translocation in cytochrome c oxidase: the D-pathway. Proc. Natl. Acad. Sci. USA. 102:6795-6800.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6795-6800
-
-
Xu, J.1
Voth, G.A.2
-
51
-
-
33646170424
-
Origins of proton transport behavior from selectivity domain mutations of the aquaporin-1 channel
-
Chen, H., Y. Wu, and G. A. Voth. 2006. Origins of proton transport behavior from selectivity domain mutations of the aquaporin-1 channel. Biophys. J. 90:L73-L75.
-
(2006)
Biophys. J
, vol.90
-
-
Chen, H.1
Wu, Y.2
Voth, G.A.3
-
52
-
-
33846021582
-
Charge delocalization in proton channels. I. The aquaporin channels and proton blockage
-
Chen, H., B. Ilan, Y. Wu, F. Zhu, K. Schulten, and G. A. Voth. 2007. Charge delocalization in proton channels. I. The aquaporin channels and proton blockage. Biophys. J. 92:46-60.
-
(2007)
Biophys. J
, vol.92
, pp. 46-60
-
-
Chen, H.1
Ilan, B.2
Wu, Y.3
Zhu, F.4
Schulten, K.5
Voth, G.A.6
-
53
-
-
33845968021
-
Charge delocalization in proton channels. II: The synthetic LS2 channel and proton selectivity
-
Wu, Y., B. Ilan, and G. A. Voth. 2007. Charge delocalization in proton channels. II: The synthetic LS2 channel and proton selectivity. Biophys. J. 92:61-69.
-
(2007)
Biophys. J
, vol.92
, pp. 61-69
-
-
Wu, Y.1
Ilan, B.2
Voth, G.A.3
-
54
-
-
0031708266
-
Electrostatics and the selectivity of ligand-gated ion channels
-
Adcock, C., G. R. Smith, and M. S. P. Sansom. 1998. Electrostatics and the selectivity of ligand-gated ion channels. Biophys. J. 75:1211-1222.
-
(1998)
Biophys. J
, vol.75
, pp. 1211-1222
-
-
Adcock, C.1
Smith, G.R.2
Sansom, M.S.P.3
-
55
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell, W. D., P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell, and P. A. Kollman. 1995. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117:5179-5197.
-
(1995)
J. Am. Chem. Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
56
-
-
5244326635
-
United atom force field for phospholipid membranes. Constant pressure molecular dynamics simulation of DPPC/water system
-
Smondyrev, A. M., and M. L. Berkowitz. 1999. United atom force field for phospholipid membranes. Constant pressure molecular dynamics simulation of DPPC/water system. J. Comput. Chem. 20:531-545.
-
(1999)
J. Comput. Chem
, vol.20
, pp. 531-545
-
-
Smondyrev, A.M.1
Berkowitz, M.L.2
-
57
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
58
-
-
33748538349
-
Automatic atom type and bond type perception in molecular mechanical calculations
-
Wang, J., W. Wang, P. A. Kollman, and D. A. Case. 2006. Automatic atom type and bond type perception in molecular mechanical calculations. J. Mol. Graph. Mod. 25:247-260.
-
(2006)
J. Mol. Graph. Mod
, vol.25
, pp. 247-260
-
-
Wang, J.1
Wang, W.2
Kollman, P.A.3
Case, D.A.4
-
59
-
-
0001538909
-
Canonical dynamics: Equilibrium phase-space distributions
-
Hoover, W. G. 1985. Canonical dynamics: equilibrium phase-space distributions. Phys. Rev. A. 31:1695-1697.
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695-1697
-
-
Hoover, W.G.1
-
60
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essman, U., L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8593.
-
(1995)
J. Chem. Phys
, vol.103
, pp. 8577-8593
-
-
Essman, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
61
-
-
0030175155
-
DL_POLY_2.0: A general-purpose parallel molecular dynamics simulation package
-
Smith, W., and T. Forester. 1996. DL_POLY_2.0: a general-purpose parallel molecular dynamics simulation package. J. Mol. Graph. 14:136-141.
-
(1996)
J. Mol. Graph
, vol.14
, pp. 136-141
-
-
Smith, W.1
Forester, T.2
-
63
-
-
0036197879
-
Molecular dynamics simulation of proton transport near the surface of a phospholipid membrane
-
Smondyrev, A. M., and G. A. Voth. 2002. Molecular dynamics simulation of proton transport near the surface of a phospholipid membrane. Biophys. J. 82:1460-1468.
-
(2002)
Biophys. J
, vol.82
, pp. 1460-1468
-
-
Smondyrev, A.M.1
Voth, G.A.2
-
64
-
-
84986519238
-
The weighted histogram analysis method for freeenergy calculations
-
Kumar, S., D. Bouzida, R. H. Swendsen, P. A. Kollman, and J. M. Rosenberg. 1992. The weighted histogram analysis method for freeenergy calculations. J. Comp. Chem. 13:1011-1021.
-
(1992)
J. Comp. Chem
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
65
-
-
0035967378
-
A multi-state empirical valence bond model for weak acid dissociation in aqueous solution
-
Cuma, M., U. W. Schmitt, and G. A. Voth. 2001. A multi-state empirical valence bond model for weak acid dissociation in aqueous solution. J. Phys. Chem. A. 105:2814-2823.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 2814-2823
-
-
Cuma, M.1
Schmitt, U.W.2
Voth, G.A.3
-
66
-
-
0347089020
-
Energetics of ion conduction through the gramicidin channel
-
Allen, T. W., O. S. Andersen, and B. Roux. 2004. Energetics of ion conduction through the gramicidin channel. Proc. Natl. Acad. Sci. USA. 101:117-122.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 117-122
-
-
Allen, T.W.1
Andersen, O.S.2
Roux, B.3
-
67
-
-
0000628743
-
Conformational flexibility of o-phosphorylcholine and o-phosphorylethanolamine: A molecular dynamics study of solvation effects
-
Woolf, T. B., and B. Roux. 1994. Conformational flexibility of o-phosphorylcholine and o-phosphorylethanolamine: a molecular dynamics study of solvation effects. J. Am. Chem. Soc. 116:5916-5926.
-
(1994)
J. Am. Chem. Soc
, vol.116
, pp. 5916-5926
-
-
Woolf, T.B.1
Roux, B.2
-
68
-
-
23244438863
-
Position-dependent diffusion coefficients and free energies from Bayesian analysis of equilibrium and replica molecular systems
-
Hummer, G. 2006. Position-dependent diffusion coefficients and free energies from Bayesian analysis of equilibrium and replica molecular systems. N. J. Phys. 7:34-47.
-
(2006)
N. J. Phys
, vol.7
, pp. 34-47
-
-
Hummer, G.1
-
69
-
-
0026011790
-
General continuum theory for multiion channel
-
Levitt, D. 1991. General continuum theory for multiion channel. I. Theory. Biophys. J. 59:271-277.
-
(1991)
I. Theory. Biophys. J
, vol.59
, pp. 271-277
-
-
Levitt, D.1
-
71
-
-
0025197061
-
a of ionizable groups in proteins: Atomic detail from a continuum electrostatic model
-
a of ionizable groups in proteins: atomic detail from a continuum electrostatic model. Biochem. 29:10219-10225.
-
(1990)
Biochem
, vol.29
, pp. 10219-10225
-
-
Bashford, D.1
Karplus, M.2
-
72
-
-
0035085645
-
Definitive assignment of proton selectivity and attoampere unitary current to the M2 ion channel protein of influenza A virus
-
Lin, T.-I., and C. Schroeder. 2001. Definitive assignment of proton selectivity and attoampere unitary current to the M2 ion channel protein of influenza A virus. J. Virol. 75:3647-3656.
-
(2001)
J. Virol
, vol.75
, pp. 3647-3656
-
-
Lin, T.-I.1
Schroeder, C.2
-
73
-
-
33751234250
-
Application of the Poisson-Nernst-Plank theory with space-dependent diffusion coefficients to KcsA
-
Furini, S., F. Zerbetto, and S. Cavalcanti. 2006. Application of the Poisson-Nernst-Plank theory with space-dependent diffusion coefficients to KcsA. Biophys. J. 91:3162-3169.
-
(2006)
Biophys. J
, vol.91
, pp. 3162-3169
-
-
Furini, S.1
Zerbetto, F.2
Cavalcanti, S.3
-
74
-
-
15244338641
-
Ion permeation through the α-hemolysin channel: Theoretical studies based on Brownian dynamics and Poisson-Nernst-Plank electrodiffusion theory
-
Noskov, S. Y., W. Im, and B. Roux. 2004. Ion permeation through the α-hemolysin channel: theoretical studies based on Brownian dynamics and Poisson-Nernst-Plank electrodiffusion theory. Biophys. J. 87:2299-2309.
-
(2004)
Biophys. J
, vol.87
, pp. 2299-2309
-
-
Noskov, S.Y.1
Im, W.2
Roux, B.3
-
75
-
-
0033032906
-
A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Plank theory with application to ion transport through the Gramicidin A channel
-
Kurnikova, M. G., R. D. Coalson, P. Graf, and A. Nitzan. 1999. A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Plank theory with application to ion transport through the Gramicidin A channel. Biophys. J. 76:642-656.
-
(1999)
Biophys. J
, vol.76
, pp. 642-656
-
-
Kurnikova, M.G.1
Coalson, R.D.2
Graf, P.3
Nitzan, A.4
-
76
-
-
0031729249
-
Virus ion channels
-
Ogden, D., I. V. Chizhmakov, F. M. Geraghty, and A. J. Hay. 1999. Virus ion channels. Methods Enzymol. 294:490-506.
-
(1999)
Methods Enzymol
, vol.294
, pp. 490-506
-
-
Ogden, D.1
Chizhmakov, I.V.2
Geraghty, F.M.3
Hay, A.J.4
-
77
-
-
20444385829
-
Chemical rescue of histidine selectivity filter mutants of the M2 ion channel of influenza A virus
-
Venkataraman, P., R. A. Lamb, and L. H. Pinto. 2005. Chemical rescue of histidine selectivity filter mutants of the M2 ion channel of influenza A virus. J. Biol. Chem. 280:21463-21472.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 21463-21472
-
-
Venkataraman, P.1
Lamb, R.A.2
Pinto, L.H.3
-
78
-
-
0018142678
-
The multifarious couplings of energy transduction
-
Williams, R. J. P. 1978. The multifarious couplings of energy transduction. BBA. 505:1-44.
-
(1978)
BBA
, vol.505
, pp. 1-44
-
-
Williams, R.J.P.1
-
79
-
-
33845936297
-
Localized proton microcircuits at the biological membrane-water interface
-
Brändén, M., T. Sandén, P. Brzezinski, and J. Widengren. 2006. Localized proton microcircuits at the biological membrane-water interface. Proc. Natl. Acad. Sci. USA. 103:19766-19770.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 19766-19770
-
-
Brändén, M.1
Sandén, T.2
Brzezinski, P.3
Widengren, J.4
-
81
-
-
0027415820
-
Reaction of bulk protons with a mitochondrial inner membrane preparation: Time-resolved measurements and their analysis
-
Gutman, M., A. B. Kotlyar, N. Borovok, and E. Nachliel. 1993. Reaction of bulk protons with a mitochondrial inner membrane preparation: time-resolved measurements and their analysis. Biochemistry. 32:2942-2946.
-
(1993)
Biochemistry
, vol.32
, pp. 2942-2946
-
-
Gutman, M.1
Kotlyar, A.B.2
Borovok, N.3
Nachliel, E.4
-
82
-
-
0024961079
-
Dynamics of proton diffusion within the hydration layer of phospholipid membrane
-
Gutman, M., E. Nachliel, and S. Moshiach. 1989. Dynamics of proton diffusion within the hydration layer of phospholipid membrane. Biochemistry. 28:2936-2940.
-
(1989)
Biochemistry
, vol.28
, pp. 2936-2940
-
-
Gutman, M.1
Nachliel, E.2
Moshiach, S.3
-
84
-
-
33646192258
-
Ion permeation through a narrow channel: Using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields
-
Allen, T. W., O. S. Andersen, and B. Roux. 2006. Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields. Biophys. J. 90:3447-3468.
-
(2006)
Biophys. J
, vol.90
, pp. 3447-3468
-
-
Allen, T.W.1
Andersen, O.S.2
Roux, B.3
-
85
-
-
33646932780
-
The M2 proton channels of influenza A and B viruses
-
Pinto, L. H., and R. A. Lamb. 2006. The M2 proton channels of influenza A and B viruses. J. Biol. Chem. 281:8997-9000.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 8997-9000
-
-
Pinto, L.H.1
Lamb, R.A.2
-
86
-
-
0038347950
-
Influenza B virus BM2 protein has ion channel activity that conducts protons across membranes
-
Mould, J. A., R. G. Paterson, M. Takeda, Y. Ohigashi, P. Venkataraman, R. A. Lamb, and L. H. Pinto. 2003. Influenza B virus BM2 protein has ion channel activity that conducts protons across membranes. Dev. Cell. 5:175-184.
-
(2003)
Dev. Cell
, vol.5
, pp. 175-184
-
-
Mould, J.A.1
Paterson, R.G.2
Takeda, M.3
Ohigashi, Y.4
Venkataraman, P.5
Lamb, R.A.6
Pinto, L.H.7
|