Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 42, 2007, Pages 16615-16620

  Beisel, Christian ^a,b   Buness, Andreas ^c   Roustan Espinosa, Ian M ^a,e   Koch, Britta ^a   Schmitt, Sabine ^a   Haas, Stefan A ^d   Hild, Marc ^a,f   Katsuyama, Tomonori ^b   Paro, Renato ^a,b  

^a UNIVERSITY OF HEIDELBERG   (Germany)

^b ETH ZURICH   (Switzerland)

^c GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^d MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^e Universidad Politecnica de Nicaragua   (Nicaragua)

^f NOVARTIS INSTITUTES FOR BIOMEDICAL RESEARCH   (United States)

Author keywords

Antennapedia; Bithorax; Chromatin; Gene regulation; HOX

Indexed keywords

DNA BINDING PROTEIN; EMBRYONIC ECTODERM DEVELOPMENT PROTEIN; HEAT SHOCK PROTEIN 70; PROTEIN PLEIOHOMEOTIC; TRITHORAX GROUP PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DROSOPHILA; GENE CONTROL; GENE EXPRESSION; GENE FUNCTION; GENE REPRESSION; GENE SILENCING; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN LOCALIZATION;

ANIMALS; DNA-BINDING PROTEINS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENE EXPRESSION REGULATION; GENE SILENCING; GENES, INSECT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 36448966082     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0701538104     Document Type: Article

References (52)

1. Ringrose L, Paro R (2004) Annu Rev Genet 38:413-443.
2. Levine SS, King IF, Kingston RE (2004) Trends Biochem Sci 29:478-485.
3. Muller J, Kassis JA (2006) Curr Opin Genet Dev 16:476-484.
4. Francis NJ, Saurin AJ, Shao Z, Kingston RE (2001) Mol Cell 8:545-556.
5. King IF, Francis NJ, Kingston RE (2002) Mol Cell Biol 22:7919-7928.
6. Papoulas O, Beek SJ, Moseley SL, McCallum CM, Sarte M, Shearn A, Tamkun JW (1998) Development (Cambridge, UK) 125:3955-3966.
7. Cao R, Wang L, Wang H, Xia L, Erdjument-Bromage H, Tempst P, Jones RS, Zhang Y (2002) Science 298:1039-1043.
8. Muller J, Hart CM, Francis NJ, Vargas ML, Sengupta A, Wild B, Miller EL, O'Connor MB, Kingston RE, Simon JA (2002) Cell 111:197-208.
9. Cao R, Tsukada YI, Zhang Y (2005) Mol Cell 20:845-854.
10. Czermin B, Melfi R, McCabe D, Seitz V, Imhof A, Pirrotta V (2002) Cell 111:185-196.
11. Fischle W, Wang Y, Jacobs SA, Kim Y, Allis CD, Khorasanizadeh S (2003) Genes Dev 17:1870-1881.
12. Klymenko T, Papp B, Fischle W, Kocher T, Schelder M, Fritsch C, Wild B, Wilm M, Muller J (2006) Genes Dev 20:1110-1122.
13. Petruk S, Sedkov Y, Smith S, Tillib S, Kraevski V, Nakamura T, Canaani E, Croce CM, Mazo A (2001) Science 294:1331-1334.
14. Beisel C, Imhof A, Greene J, Kremmer E, Sauer F (2002) Nature 419:857-862.
15. Klymenko T, Muller J (2004) EMBO Rep 5:373-377.
16. Papp B, Muller J (2006) Genes Dev 20:2041-2054.
17. Cavalli G, Paro R (1999) Science 286:955-958.
18. Orlando V, Jane EP, Chinwalla V, Harte PJ, Paro R (1998) EMBO J 17:5141-5150.
19. Strutt H, Cavalli G, Paro R (1997) EMBO J 16:3621-3632.
20. Ringrose L, Ehret H, Paro R (2004) Mol Cell 16:641-653.
21. Strutt H, Paro R (1997) Mol Cell Biol 17:6773-6783.
22. Otte AP, Kwaks TH (2003) Curr Opin Genet Dev 13:448-454.
23. Rastelli L, Chan CS, Pirrotta V (1993) EMBO J 12:1513-1522.
24. Mohd-Sarip A, Cleard F, Mishra RK, Karch F, Verrijzer CP (2005) Genes Dev 19:1755-1760.
25. Mohd-Sarip A, Venturini F, Chalkley GE, Verrijzer CP (2002) Mol Cell Biol 22:7473-7483.
26. Wang L, Brown JL, Cao R, Zhang Y, Kassis JA, Jones RS (2004) Mol Cell 14:637-646.
27. Brown JL, Fritsch C, Mueller J, Kassis JA (2003) Development (Cambridge, UK) 130:285-294.
28. Schwartz YB, Kahn TG, Nix DA, Li XY, Bourgon R, Biggin M, Pirrotta V (2006) Nat Genet 38:700-705.
29. Kahn TG, Schwartz YB, Dellino GI, Pirrotta V (2006) J Biol Chem 281:29064-29075.
30. Ringrose L, Rehmsmeier M, Dura JM, Paro R (2003) Dev Cell 5:759-771.
31. Schmitt S, Prestel M, Paro R (2005) Genes Dev 19:697-708.
32. Breiling A, O'Neill LP, D'Eliseo D, Turner BM, Orlando V (2004) EMBO Rep 5:976-982.
33. Breiling A, Turner BM, Bianchi ME, Orlando V (2001) Nature 412:651-655.
34. Saurin AJ, Shao Z, Erdjument-Bromage H, Tempst P, Kingston RE (2001) Nature 412:655-660.
35. Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ, III, Gingeras TR, et al. (2005) Cell 120:169-181.
36. Guenther MG, Jenner RG, Chevalier B, Nakamura T, Croce CM, Canaani E, Young RA (2005) Proc Natl Acad Sci USA 102:8603-8608.
37. Bracken AP, Dietrich N, Pasini D, Hansen KH, Helin K (2006) Genes Dev 20:1123-1136.
38. Ng HH, Robert F, Young RA, Struhl K (2003) Mol Cell 11:709-719.
39. Briggs SD, Bryk M, Strahl BD, Cheung WL, Davie JK, Dent SY, Winston F, Allis CD (2001) Genes Dev 15:3286-3295.
40. Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF (2001) EMBO J 20:7137-7148.
41. Miller T, Krogan NJ, Dover J, Erdjument-Bromage H, Tempst P, Johnston M, Greenblatt JF, Shilatifard A (2001) Proc Natl Acad Sci USA 98:12902-12907.
42. Petruk S, Sedkov Y, Riley KM, Hodgson J, Schweisguth F, Hirose S, Jaynes JB, Brock HW, Mazo A (2006) Cell 127:1209-1221.
43. Petruk S, Sedkov Y, Brock HW, Mazo A (2007) RNA Biol 4:1-6.
44. Hogga I, Karch F (2002) Development (Cambridge, UK) 129:4915-4922.
45. Krajewski WA, Nakamura T, Mazo A, Canaani E (2005) Mol Cell Biol 25:1891-1899.
46. Kuzin B, Tillib S, Sedkov Y, Mizrokhi L, Mazo A (1994) Genes Dev 8:2478-2490.
47. Hsieh JJ, Cheng EH, Korsmeyer SJ (2003) Cell 115:293-303.
48. Armstrong JA, Papoulas O, Daubresse G, Sperling AS, Lis JT, Scott MP, Tamkun JW (2002) EMBO J 21:5245-5254.
49. Smith ST, Petruk S, Sedkov Y, Cho E, Tillib S, Canaani E, Mazo A (2004) Nat Cell Biol 6:162-167.
50. Negre N, Hennetin J, Sun LV, Lavrov S, Bellis M, White KP, Cavalli G (2006) PLoS Biol 4:e170.
51. Orlando V, Strutt H, Paro R (1997) Methods 11:205-214.
52. Lavrov S, Dejardin J, Cavalli G (2004) Methods Mol Biol 247:289-303.