-
1
-
-
33646234749
-
A simple method for assessing sample sizes in microarray experiments
-
Tibshirani R.J. A simple method for assessing sample sizes in microarray experiments. BMC Bioinformatics 7 1 (2006) 106
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 106
-
-
Tibshirani, R.J.1
-
2
-
-
33644857367
-
The PowerAtlas: a power and sample size atlas for microarray experimental design and research
-
Page G.P., Edwards J.W., Gadbury G.L., Yelisetti P., Wang J., Trivedi P., and Allison D.B. The PowerAtlas: a power and sample size atlas for microarray experimental design and research. BMC Bioinformatics 7 (2006) 84
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 84
-
-
Page, G.P.1
Edwards, J.W.2
Gadbury, G.L.3
Yelisetti, P.4
Wang, J.5
Trivedi, P.6
Allison, D.B.7
-
3
-
-
33645324706
-
An interactive power analysis tool for microarray hypothesis testing and generation
-
Seo J., Gordish-Dressman H., and Hoffman E.P. An interactive power analysis tool for microarray hypothesis testing and generation. Bioinformatics 22 7 (2006) 808-814
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 808-814
-
-
Seo, J.1
Gordish-Dressman, H.2
Hoffman, E.P.3
-
4
-
-
27344457150
-
Split-plot microarray experiments: issues of design, power and sample size
-
Tsai P.W., and Lee M.L. Split-plot microarray experiments: issues of design, power and sample size. Appl. Bioinformatics 4 3 (2005) 187-194
-
(2005)
Appl. Bioinformatics
, vol.4
, Issue.3
, pp. 187-194
-
-
Tsai, P.W.1
Lee, M.L.2
-
5
-
-
23244433960
-
FDR-controlling testing procedures and sample size determination for microarrays
-
Li S.S., Bigler J., Lampe J.W., Potter J.D., and Feng Z. FDR-controlling testing procedures and sample size determination for microarrays. Stat. Med. 24 15 (2005) 2267-2280
-
(2005)
Stat. Med.
, vol.24
, Issue.15
, pp. 2267-2280
-
-
Li, S.S.1
Bigler, J.2
Lampe, J.W.3
Potter, J.D.4
Feng, Z.5
-
6
-
-
21644451292
-
Sample size calculation for multiple testing in microarray data analysis
-
Jung S.H., Bang H., and Young S. Sample size calculation for multiple testing in microarray data analysis. Biostatistics 6 1 (2005) 157-169
-
(2005)
Biostatistics
, vol.6
, Issue.1
, pp. 157-169
-
-
Jung, S.H.1
Bang, H.2
Young, S.3
-
7
-
-
4544298732
-
Sample size for identifying differentially expressed genes in microarray experiments
-
Wang S.J., and Chen J.J. Sample size for identifying differentially expressed genes in microarray experiments. J. Comput. Biol. 11 4 (2004) 714-726
-
(2004)
J. Comput. Biol.
, vol.11
, Issue.4
, pp. 714-726
-
-
Wang, S.J.1
Chen, J.J.2
-
8
-
-
17444387485
-
Sample size for gene expression microarray experiments
-
Tsai C.A., Wang S.J., Chen D.T., and Chen J.J. Sample size for gene expression microarray experiments. Bioinformatics 21 8 (2005) 1502-1508
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1502-1508
-
-
Tsai, C.A.1
Wang, S.J.2
Chen, D.T.3
Chen, J.J.4
-
9
-
-
9444266425
-
Sample size for detecting differentially expressed genes in microarray experiments
-
Wei C., Li J., and Bumgarner R.E. Sample size for detecting differentially expressed genes in microarray experiments. BMC Genomics 5 1 (2004) 87
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 87
-
-
Wei, C.1
Li, J.2
Bumgarner, R.E.3
-
10
-
-
0036738906
-
Determination of minimum sample size and discriminatory expression patterns in microarray data
-
Hwang D., Schmitt W.A., Stephanopoulos G., and Stephanopoulos G. Determination of minimum sample size and discriminatory expression patterns in microarray data. Bioinformatics 18 9 (2002) 1184-1193
-
(2002)
Bioinformatics
, vol.18
, Issue.9
, pp. 1184-1193
-
-
Hwang, D.1
Schmitt, W.A.2
Stephanopoulos, G.3
Stephanopoulos, G.4
-
11
-
-
0038237368
-
Estimating dataset size requirements for classifying DNA microarray data
-
Mukherjee S., Tamayo P., Rogers S., Rifkin R., Engle A., Campbell C., Golub T.R., and Mesirov J.P. Estimating dataset size requirements for classifying DNA microarray data. J. Comput. Biol. 10 2 (2003) 119-142
-
(2003)
J. Comput. Biol.
, vol.10
, Issue.2
, pp. 119-142
-
-
Mukherjee, S.1
Tamayo, P.2
Rogers, S.3
Rifkin, R.4
Engle, A.5
Campbell, C.6
Golub, T.R.7
Mesirov, J.P.8
-
12
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy S.L., Tamayo P., Gaasenbeek M., Sturla L.M., Angelo M., McLaughlin M.E., Kim J.-Y.H., Goumnerovak L.C., Blackk P.M., Lau C., Allen J.C., ZagzagI D., Olson J.M., Curran T., Wetmore C., Biegel J.A., Poggio T., Mukherjee S., Rifkin R., Califanokk A., Stolovitzkykk G., Louis D.N., Mesirov J.P., Lander E.S., and Golub T.R. Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 415 6870 (2002) 436-442
-
(2002)
Nature
, vol.415
, Issue.6870
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.-Y.H.7
Goumnerovak, L.C.8
Blackk, P.M.9
Lau, C.10
Allen, J.C.11
ZagzagI, D.12
Olson, J.M.13
Curran, T.14
Wetmore, C.15
Biegel, J.A.16
Poggio, T.17
Mukherjee, S.18
Rifkin, R.19
Califanokk, A.20
Stolovitzkykk, G.21
Louis, D.N.22
Mesirov, J.P.23
Lander, E.S.24
Golub, T.R.25
more..
-
13
-
-
19044391072
-
Gene expression correlates of clinical prostate cancer behavior
-
Singh D., Febbo P.G., Ross K., Jackson D.G., Manola J., Ladd C., Tamayo P., Renshaw A.A., D'Amico A.V., Richie J.P., Lander E.S., Loda M., Kantoff P.W., Golub T.R., and Sellers W.R. Gene expression correlates of clinical prostate cancer behavior. Cancer Cell 1 2 (2002) 203-209
-
(2002)
Cancer Cell
, vol.1
, Issue.2
, pp. 203-209
-
-
Singh, D.1
Febbo, P.G.2
Ross, K.3
Jackson, D.G.4
Manola, J.5
Ladd, C.6
Tamayo, P.7
Renshaw, A.A.8
D'Amico, A.V.9
Richie, J.P.10
Lander, E.S.11
Loda, M.12
Kantoff, P.W.13
Golub, T.R.14
Sellers, W.R.15
-
14
-
-
0035931947
-
Gene-expression profiles in hereditary breast cancer
-
Hedenfalk I., Duggan D., Chen Y., et al. Gene-expression profiles in hereditary breast cancer. New Engl. J. Med. 344 (2001) 539-548
-
(2001)
New Engl. J. Med.
, vol.344
, pp. 539-548
-
-
Hedenfalk, I.1
Duggan, D.2
Chen, Y.3
-
15
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van 't Veer L.J., Dai H., van de Vijver M.J., He Y.D., Hart A.A., Mao M., Peterse H.L., van der Kooy K., Marton M.J., Witteveen A.T., Schreiber G.J., Kerkhoven R.M., Roberts C., Linsley P.S., Bernards R., and Friend S.H. Gene expression profiling predicts clinical outcome of breast cancer. Nature 415 (2002) 530-536
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van 't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
Schreiber, G.J.11
Kerkhoven, R.M.12
Roberts, C.13
Linsley, P.S.14
Bernards, R.15
Friend, S.H.16
-
16
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon U., Barkai N., Notterman D.A., Gish K., Ybarra S., Mack D., and Levine A.J. Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci. USA 96 12 (1999) 6745-6750
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, Issue.12
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
19
-
-
15544374707
-
-
Chapman & Hall, Boca Raton, FL
-
Pal S.K., and Mitra P. Pattern Recognition Algorithms for Data Mining: Scalability, Knowledge Discovery and Soft Granular Computing (2004), Chapman & Hall, Boca Raton, FL
-
(2004)
Pattern Recognition Algorithms for Data Mining: Scalability, Knowledge Discovery and Soft Granular Computing
-
-
Pal, S.K.1
Mitra, P.2
-
20
-
-
0036735386
-
Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma
-
Gordon G.J., Jensen R.V., Hsiao L.L., Gullans S.R., Blumenstock J.E., Ramaswamy S., Richards W.G., Sugarbaker D.J., and Bueno R. Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma. Cancer Res. 62 17 (2002) 4963-5967
-
(2002)
Cancer Res.
, vol.62
, Issue.17
, pp. 4963-5967
-
-
Gordon, G.J.1
Jensen, R.V.2
Hsiao, L.L.3
Gullans, S.R.4
Blumenstock, J.E.5
Ramaswamy, S.6
Richards, W.G.7
Sugarbaker, D.J.8
Bueno, R.9
-
21
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression
-
Golub T.R., Slonim D.K., Tamayo P., Huard C., Gaasenbeek M., Mesirov J.P., Coller H., Loh M., Downing J.R., Caligiuri M.A., Bloomfield C.D., and Lander E.S. Molecular classification of cancer: class discovery and class prediction by gene expression. Science 286 (1999) 531-537
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
22
-
-
18544375333
-
MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia
-
Armstrong S.A., Staunton J.E., Silverman L.B., Pieters R., den Boer M.L., Minden M.D., Sallan S.E., Lander E.S., Golub T.R., and Korsmeyer S.J. MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia. Nature Genetics 30 1 (2001) 41-47
-
(2001)
Nature Genetics
, vol.30
, Issue.1
, pp. 41-47
-
-
Armstrong, S.A.1
Staunton, J.E.2
Silverman, L.B.3
Pieters, R.4
den Boer, M.L.5
Minden, M.D.6
Sallan, S.E.7
Lander, E.S.8
Golub, T.R.9
Korsmeyer, S.J.10
-
23
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan J., Wei J.S., Ringner M., Saal L.H., Ladanyi M., Westermann F., Berthold F., Schwab M., Antonescu C.R., Peterson C., and Meltzer R.S. Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nature Med. 7 (2001) 673-679
-
(2001)
Nature Med.
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
Meltzer, R.S.11
-
24
-
-
4544281596
-
-
John Wiley, New York
-
Mitra S., and Acharya T. Data Mining, Multimedia, Soft Computing, and Bioinformatics (2003), John Wiley, New York
-
(2003)
Data Mining, Multimedia, Soft Computing, and Bioinformatics
-
-
Mitra, S.1
Acharya, T.2
-
28
-
-
33847221802
-
Artificial neural network analysis of DNA microarray-based prostate cancer recurrence
-
IEEE Computational Intelligence Society, Piscatawy, NJ
-
Peterson L.E., Ozen M., Erdem H., Amini A., Gomez L., Nelson C.C., and Ittmann M. Artificial neural network analysis of DNA microarray-based prostate cancer recurrence. Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2005, San Diego, CA) (2005), IEEE Computational Intelligence Society, Piscatawy, NJ
-
(2005)
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2005, San Diego, CA)
-
-
Peterson, L.E.1
Ozen, M.2
Erdem, H.3
Amini, A.4
Gomez, L.5
Nelson, C.C.6
Ittmann, M.7
-
29
-
-
0029535737
-
-
J. Kennedy, R.C. Eberhart, Particle swarm optimization, in: Proceedings of IEEE International Conference on Neural Networks, Piscataway, NJ, 1995, pp. 1942-1948.
-
-
-
-
30
-
-
33745149670
-
Evaluation of particle swarm optimization effectiveness in classification
-
De Falco I., Della Cioppa A., and Tarantino E. Evaluation of particle swarm optimization effectiveness in classification. Lect. Notes Comput. Sci. 3849 (2006) 164-171
-
(2006)
Lect. Notes Comput. Sci.
, vol.3849
, pp. 164-171
-
-
De Falco, I.1
Della Cioppa, A.2
Tarantino, E.3
-
34
-
-
33646733849
-
Optimized particle swarm optimization and its application to artificial neural network training
-
Meissner M., Schmuker M., and Schneider G. Optimized particle swarm optimization and its application to artificial neural network training. BMC Bioinformatics 7 (2006) 125-136
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 125-136
-
-
Meissner, M.1
Schmuker, M.2
Schneider, G.3
-
35
-
-
0036464756
-
The particle swarm - explosion, stability, and convergence in a multidimensional complex space
-
Clerc M., and Kennedy J. The particle swarm - explosion, stability, and convergence in a multidimensional complex space. IEEE Trans. Evol. Comput. 6 (2002) 58-73
-
(2002)
IEEE Trans. Evol. Comput.
, vol.6
, pp. 58-73
-
-
Clerc, M.1
Kennedy, J.2
|