메뉴 건너뛰기




Volumn 230, Issue 3, 2004, Pages 289-299

Inferring models of gene expression dynamics

Author keywords

Differential equations; Genetic network inference; Logic

Indexed keywords

GENE EXPRESSION;

EID: 4143051643     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jtbi.2004.05.022     Document Type: Article
Times cited : (55)

References (37)
  • 2
    • 0032616683 scopus 로고    scopus 로고
    • Identification of genetic networks from a small number of gene expression patterns under the boolean network model
    • Akutsu, T., Miyano, S., Kuhara, S., 1999. Identification of genetic networks from a small number of gene expression patterns under the boolean network model. In Pacific Symposium Biocomputing (PSB'99), pp. 17-28.
    • (1999) Pacific Symposium Biocomputing (PSB'99) , pp. 17-28
    • Akutsu, T.1    Miyano, S.2    Kuhara, S.3
  • 3
    • 0042808605 scopus 로고    scopus 로고
    • A natural class of robust networks
    • Aldana M., Cluzel P. A natural class of robust networks. Proc. Natl Acad. Sci. USA. 100(15):2003;8710-8714
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , Issue.15 , pp. 8710-8714
    • Aldana, M.1    Cluzel, P.2
  • 4
    • 0141484562 scopus 로고    scopus 로고
    • Biological networks: The tinkerer as an engineer
    • Alon U. Biological networks. the tinkerer as an engineer Science. 301:2003;1866-1867
    • (2003) Science , vol.301 , pp. 1866-1867
    • Alon, U.1
  • 5
    • 0031582803 scopus 로고    scopus 로고
    • Programming the Drosophila embryo
    • Bodnar J. Programming the Drosophila embryo. J. Theor. Biol. 188:1997;391-445
    • (1997) J. Theor. Biol. , vol.188 , pp. 391-445
    • Bodnar, J.1
  • 6
    • 0040898784 scopus 로고    scopus 로고
    • The electrical resistance of a graph captures its commute and cover times
    • Chandra A.K., Raghavan P., Ruzzo W.L., Smolensky R., Tiwari P. The electrical resistance of a graph captures its commute and cover times. Comput. Compl. 6(4):1997;312-340
    • (1997) Comput. Compl. , vol.6 , Issue.4 , pp. 312-340
    • Chandra, A.K.1    Raghavan, P.2    Ruzzo, W.L.3    Smolensky, R.4    Tiwari, P.5
  • 8
    • 0345269975 scopus 로고    scopus 로고
    • Genetic network analyzer: Qualitative simulation of genetic regulatory networks
    • De Jong H., Geiselmann J., Hernandez C., Page M. Genetic network analyzer. qualitative simulation of genetic regulatory networks Bioinformatics. 19(3):2003;336-344
    • (2003) Bioinformatics , vol.19 , Issue.3 , pp. 336-344
    • De Jong, H.1    Geiselmann, J.2    Hernandez, C.3    Page, M.4
  • 10
    • 0037453072 scopus 로고    scopus 로고
    • A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS
    • Ding C., Cantor C.R. A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS. Proc. Natl Acad. Sci. USA. 100(6):2003;3059-3064
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , Issue.6 , pp. 3059-3064
    • Ding, C.1    Cantor, C.R.2
  • 11
    • 0034404253 scopus 로고    scopus 로고
    • Combinatorial explosion in model gene networks
    • Edwards R., Glass L. Combinatorial explosion in model gene networks. Chaos. 10:2000;691-704
    • (2000) Chaos , vol.10 , pp. 691-704
    • Edwards, R.1    Glass, L.2
  • 12
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz M.B., Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 403:2000;335-338
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 13
    • 0038048325 scopus 로고    scopus 로고
    • Inferring genetic networks and identifying compound mode of action via expression profiling
    • Gardner T.S., di Bernardo D., Lorenz D., Collins J.J. Inferring genetic networks and identifying compound mode of action via expression profiling. Science. 301:2003;102-105
    • (2003) Science , vol.301 , pp. 102-105
    • Gardner, T.S.1    Di Bernardo, D.2    Lorenz, D.3    Collins, J.J.4
  • 14
    • 33749553474 scopus 로고
    • Combinatorial and topological methods in nonlinear chemical kinetics
    • Glass L. Combinatorial and topological methods in nonlinear chemical kinetics. J. Chem. Phys. 63(4):1975;1325-1335
    • (1975) J. Chem. Phys. , vol.63 , Issue.4 , pp. 1325-1335
    • Glass, L.1
  • 15
    • 0015609281 scopus 로고
    • The logical analysis of continuous, non-linear biochemical control networks
    • Glass L., Kauffman S.A. The logical analysis of continuous, non-linear biochemical control networks. J. Theor. Biol. 39:1973;103-129
    • (1973) J. Theor. Biol. , vol.39 , pp. 103-129
    • Glass, L.1    Kauffman, S.A.2
  • 16
    • 85040473565 scopus 로고    scopus 로고
    • A model of transcriptional regulatory networks based on biases in the observed regulation rules
    • Harris S.E., Sawhill B.K., Wuensche A., Kauffman S. A model of transcriptional regulatory networks based on biases in the observed regulation rules. Complexity. 7(4):2002;23-40
    • (2002) Complexity , vol.7 , Issue.4 , pp. 23-40
    • Harris, S.E.1    Sawhill, B.K.2    Wuensche, A.3    Kauffman, S.4
  • 17
    • 0000660076 scopus 로고    scopus 로고
    • Discovery of regulatory interactions through perturbation: Inference and experimental design
    • Ideker, T.E., Thorsson, V., Karp, R.M., 2000. Discovery of regulatory interactions through perturbation: inference and experimental design. In Pacific Symposium on Biocomputing, pp. 302-313.
    • (2000) Pacific Symposium on Biocomputing , pp. 302-313
    • Ideker, T.E.1    Thorsson, V.2    Karp, R.M.3
  • 21
    • 0031616241 scopus 로고    scopus 로고
    • REVEAL, a general reverse-engineering algorithm for inference of genetic network architectures
    • Liang, S., Fuhrman, S., Somogyi, R., 1998. REVEAL, a general reverse-engineering algorithm for inference of genetic network architectures. In Pacific Symposium on Biocomputing, pp. 18-29.
    • (1998) Pacific Symposium on Biocomputing , pp. 18-29
    • Liang, S.1    Fuhrman, S.2    Somogyi, R.3
  • 23
    • 0029028963 scopus 로고
    • Circuit simulation of genetic networks
    • McAdams H.H., Shapiro L. Circuit simulation of genetic networks. Science. 269:1995;650-656
    • (1995) Science , vol.269 , pp. 650-656
    • McAdams, H.H.1    Shapiro, L.2
  • 24
    • 0032555224 scopus 로고    scopus 로고
    • Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis
    • Mendoza L., Alvarez-Buylla E.R. Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis. J. Theor. Biol. 193:1998;307-319
    • (1998) J. Theor. Biol. , vol.193 , pp. 307-319
    • Mendoza, L.1    Alvarez-Buylla, E.R.2
  • 25
    • 0028844979 scopus 로고
    • A mathematical framework for describing and analysing gene regulatory networks
    • Mestl T., Plahte E., Ornholt S.W. A mathematical framework for describing and analysing gene regulatory networks. J. Theor. Biol. 176:1995;291-300
    • (1995) J. Theor. Biol. , vol.176 , pp. 291-300
    • Mestl, T.1    Plahte, E.2    Ornholt, S.W.3
  • 26
    • 7044286330 scopus 로고    scopus 로고
    • Common chaos in arbitrarily complex feedback networks
    • Mestl T., Bagley R.J., Glass L. Common chaos in arbitrarily complex feedback networks. Phys. Rev. Lett. 79(4):1997;653-656
    • (1997) Phys. Rev. Lett. , vol.79 , Issue.4 , pp. 653-656
    • Mestl, T.1    Bagley, R.J.2    Glass, L.3
  • 27
    • 0036722577 scopus 로고    scopus 로고
    • Effects of alternative connectivity on behavior of randomly constructed boolean networks
    • Oosawa C., Savageau M.A. Effects of alternative connectivity on behavior of randomly constructed boolean networks. Physica D. 170:2002;143-161
    • (2002) Physica D , vol.170 , pp. 143-161
    • Oosawa, C.1    Savageau, M.A.2
  • 28
    • 0028897360 scopus 로고
    • Mechanism of eve stripe formation
    • Reinitz J., Sharp D.H. Mechanism of eve stripe formation. Mech. Dev. 49:1995;133-158
    • (1995) Mech. Dev. , vol.49 , pp. 133-158
    • Reinitz, J.1    Sharp, D.H.2
  • 29
    • 0035928464 scopus 로고    scopus 로고
    • A logical analysis of the gap gene system
    • Sanchez L., Thieffry D. A logical analysis of the gap gene system. J. Theor. Biol. 211:2001;115-141
    • (2001) J. Theor. Biol. , vol.211 , pp. 115-141
    • Sanchez, L.1    Thieffry, D.2
  • 31
    • 0002054202 scopus 로고    scopus 로고
    • Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation
    • Somogyi R., Sniegoski C.A. Modeling the complexity of genetic networks. understanding multigenic and pleiotropic regulation Complexity. 1:1996;45-63
    • (1996) Complexity , vol.1 , pp. 45-63
    • Somogyi, R.1    Sniegoski, C.A.2
  • 32
    • 0037687416 scopus 로고    scopus 로고
    • Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling
    • Tegner J., Yeung M.K.S., Hasty J., Collins J.J. Reverse engineering gene networks. integrating genetic perturbations with dynamical modeling Proc. Natl Acad. Sci. 100:2003;5944-5949
    • (2003) Proc. Natl Acad. Sci. , vol.100 , pp. 5944-5949
    • Tegner, J.1    Yeung, M.K.S.2    Hasty, J.3    Collins, J.J.4
  • 35
    • 0034644270 scopus 로고    scopus 로고
    • The segment polarity network is a robust developmental module
    • Von Dassow G., Meir E., Munro E.M., Odell G.M. The segment polarity network is a robust developmental module. Nature. 406:2000;188-192
    • (2000) Nature , vol.406 , pp. 188-192
    • Von Dassow, G.1    Meir, E.2    Munro, E.M.3    Odell, G.M.4
  • 36
    • 0037197936 scopus 로고    scopus 로고
    • Reverse engineering gene networks using singular value decomposition and robust regression
    • Yeung M.K.S., Tegner J., Collins J.J. Reverse engineering gene networks using singular value decomposition and robust regression. Proc. Natl Acad. Sci. 99:2002;6163-6168
    • (2002) Proc. Natl Acad. Sci. , vol.99 , pp. 6163-6168
    • Yeung, M.K.S.1    Tegner, J.2    Collins, J.J.3
  • 37
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
    • Yuh C.-H., Bolouri H., Davidson E.H. Genomic cis-regulatory logic. experimental and computational analysis of a sea urchin gene Science. 279:1998;1896-1902
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.-H.1    Bolouri, H.2    Davidson, E.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.