-
1
-
-
0032277733
-
Identification of gene regulatory networks by strategic gene disruptions and gene overexpressions
-
Akutsu, T., Kuhara, S., Maruyama, O., Miyano, S., 1998. Identification of gene regulatory networks by strategic gene disruptions and gene overexpressions. In: Proceedings of the Ninth ACM-SIAM Symposium on Discrete Algorithms, pp. 695-702.
-
(1998)
Proceedings of the Ninth ACM-SIAM Symposium on Discrete Algorithms
, pp. 695-702
-
-
Akutsu, T.1
Kuhara, S.2
Maruyama, O.3
Miyano, S.4
-
2
-
-
0032616683
-
Identification of genetic networks from a small number of gene expression patterns under the boolean network model
-
Akutsu, T., Miyano, S., Kuhara, S., 1999. Identification of genetic networks from a small number of gene expression patterns under the boolean network model. In Pacific Symposium Biocomputing (PSB'99), pp. 17-28.
-
(1999)
Pacific Symposium Biocomputing (PSB'99)
, pp. 17-28
-
-
Akutsu, T.1
Miyano, S.2
Kuhara, S.3
-
3
-
-
0042808605
-
A natural class of robust networks
-
Aldana M., Cluzel P. A natural class of robust networks. Proc. Natl Acad. Sci. USA. 100(15):2003;8710-8714
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, Issue.15
, pp. 8710-8714
-
-
Aldana, M.1
Cluzel, P.2
-
4
-
-
0141484562
-
Biological networks: The tinkerer as an engineer
-
Alon U. Biological networks. the tinkerer as an engineer Science. 301:2003;1866-1867
-
(2003)
Science
, vol.301
, pp. 1866-1867
-
-
Alon, U.1
-
5
-
-
0031582803
-
Programming the Drosophila embryo
-
Bodnar J. Programming the Drosophila embryo. J. Theor. Biol. 188:1997;391-445
-
(1997)
J. Theor. Biol.
, vol.188
, pp. 391-445
-
-
Bodnar, J.1
-
6
-
-
0040898784
-
The electrical resistance of a graph captures its commute and cover times
-
Chandra A.K., Raghavan P., Ruzzo W.L., Smolensky R., Tiwari P. The electrical resistance of a graph captures its commute and cover times. Comput. Compl. 6(4):1997;312-340
-
(1997)
Comput. Compl.
, vol.6
, Issue.4
, pp. 312-340
-
-
Chandra, A.K.1
Raghavan, P.2
Ruzzo, W.L.3
Smolensky, R.4
Tiwari, P.5
-
7
-
-
0032611513
-
Modeling gene expression with differential equations
-
Chen, T., He, H.L., Church, G.M., 1999. Modeling gene expression with differential equations. In Pacific Symposium on Biocomputing, pp. 29-40.
-
(1999)
Pacific Symposium on Biocomputing
, pp. 29-40
-
-
Chen, T.1
He, H.L.2
Church, G.M.3
-
8
-
-
0345269975
-
Genetic network analyzer: Qualitative simulation of genetic regulatory networks
-
De Jong H., Geiselmann J., Hernandez C., Page M. Genetic network analyzer. qualitative simulation of genetic regulatory networks Bioinformatics. 19(3):2003;336-344
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 336-344
-
-
De Jong, H.1
Geiselmann, J.2
Hernandez, C.3
Page, M.4
-
9
-
-
0032612220
-
Linear modeling of mRNA expression levels during CNS development and injury
-
D'Haeseleer, P., Wen, X., Fuhrman, S., Somogyi, R., 1999. Linear modeling of mRNA expression levels during CNS development and injury. In Pacific Symposium on Biocomputing, pp. 41-52.
-
(1999)
Pacific Symposium on Biocomputing
, pp. 41-52
-
-
D'Haeseleer, P.1
Wen, X.2
Fuhrman, S.3
Somogyi, R.4
-
10
-
-
0037453072
-
A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS
-
Ding C., Cantor C.R. A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS. Proc. Natl Acad. Sci. USA. 100(6):2003;3059-3064
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, Issue.6
, pp. 3059-3064
-
-
Ding, C.1
Cantor, C.R.2
-
11
-
-
0034404253
-
Combinatorial explosion in model gene networks
-
Edwards R., Glass L. Combinatorial explosion in model gene networks. Chaos. 10:2000;691-704
-
(2000)
Chaos
, vol.10
, pp. 691-704
-
-
Edwards, R.1
Glass, L.2
-
12
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz M.B., Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 403:2000;335-338
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
13
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
Gardner T.S., di Bernardo D., Lorenz D., Collins J.J. Inferring genetic networks and identifying compound mode of action via expression profiling. Science. 301:2003;102-105
-
(2003)
Science
, vol.301
, pp. 102-105
-
-
Gardner, T.S.1
Di Bernardo, D.2
Lorenz, D.3
Collins, J.J.4
-
14
-
-
33749553474
-
Combinatorial and topological methods in nonlinear chemical kinetics
-
Glass L. Combinatorial and topological methods in nonlinear chemical kinetics. J. Chem. Phys. 63(4):1975;1325-1335
-
(1975)
J. Chem. Phys.
, vol.63
, Issue.4
, pp. 1325-1335
-
-
Glass, L.1
-
15
-
-
0015609281
-
The logical analysis of continuous, non-linear biochemical control networks
-
Glass L., Kauffman S.A. The logical analysis of continuous, non-linear biochemical control networks. J. Theor. Biol. 39:1973;103-129
-
(1973)
J. Theor. Biol.
, vol.39
, pp. 103-129
-
-
Glass, L.1
Kauffman, S.A.2
-
16
-
-
85040473565
-
A model of transcriptional regulatory networks based on biases in the observed regulation rules
-
Harris S.E., Sawhill B.K., Wuensche A., Kauffman S. A model of transcriptional regulatory networks based on biases in the observed regulation rules. Complexity. 7(4):2002;23-40
-
(2002)
Complexity
, vol.7
, Issue.4
, pp. 23-40
-
-
Harris, S.E.1
Sawhill, B.K.2
Wuensche, A.3
Kauffman, S.4
-
17
-
-
0000660076
-
Discovery of regulatory interactions through perturbation: Inference and experimental design
-
Ideker, T.E., Thorsson, V., Karp, R.M., 2000. Discovery of regulatory interactions through perturbation: inference and experimental design. In Pacific Symposium on Biocomputing, pp. 302-313.
-
(2000)
Pacific Symposium on Biocomputing
, pp. 302-313
-
-
Ideker, T.E.1
Thorsson, V.2
Karp, R.M.3
-
19
-
-
0031616115
-
Automated assay of gene expression at cellular resolution
-
Kosman, D., Reinitz, J., Sharp, D.H., 1998. Automated assay of gene expression at cellular resolution. In Pacific Symposium on Biocomputing, pp. 6-17.
-
(1998)
Pacific Symposium on Biocomputing
, pp. 6-17
-
-
Kosman, D.1
Reinitz, J.2
Sharp, D.H.3
-
20
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee T.I., Rinaldi N.J., Robert F., Odom D.T., Bar-Joseph Z., Gerber G.K., Hannett N.M., Harbison C.T., Thompson C.M., Simon I., Zeitlinger J., Jennings E.G., Murray H.L., Gordon D.B., Ren B., Wyrick J.J., Tagne J., Volkert T.L., Fraenkel E., Gifford D.K., Young R.A. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science. 298:2002;799-804
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
21
-
-
0031616241
-
REVEAL, a general reverse-engineering algorithm for inference of genetic network architectures
-
Liang, S., Fuhrman, S., Somogyi, R., 1998. REVEAL, a general reverse-engineering algorithm for inference of genetic network architectures. In Pacific Symposium on Biocomputing, pp. 18-29.
-
(1998)
Pacific Symposium on Biocomputing
, pp. 18-29
-
-
Liang, S.1
Fuhrman, S.2
Somogyi, R.3
-
22
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart D.J., Dong H., Byrne M.C., Follettie M.T., Gallo M.V., Chee M.S., Mittmann M., Wang C., Kobayashi M., Horton H., Brown E.L. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotechnol. 14(12):1996;1675-1680
-
(1996)
Nature Biotechnol.
, vol.14
, Issue.12
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
23
-
-
0029028963
-
Circuit simulation of genetic networks
-
McAdams H.H., Shapiro L. Circuit simulation of genetic networks. Science. 269:1995;650-656
-
(1995)
Science
, vol.269
, pp. 650-656
-
-
McAdams, H.H.1
Shapiro, L.2
-
24
-
-
0032555224
-
Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis
-
Mendoza L., Alvarez-Buylla E.R. Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis. J. Theor. Biol. 193:1998;307-319
-
(1998)
J. Theor. Biol.
, vol.193
, pp. 307-319
-
-
Mendoza, L.1
Alvarez-Buylla, E.R.2
-
25
-
-
0028844979
-
A mathematical framework for describing and analysing gene regulatory networks
-
Mestl T., Plahte E., Ornholt S.W. A mathematical framework for describing and analysing gene regulatory networks. J. Theor. Biol. 176:1995;291-300
-
(1995)
J. Theor. Biol.
, vol.176
, pp. 291-300
-
-
Mestl, T.1
Plahte, E.2
Ornholt, S.W.3
-
26
-
-
7044286330
-
Common chaos in arbitrarily complex feedback networks
-
Mestl T., Bagley R.J., Glass L. Common chaos in arbitrarily complex feedback networks. Phys. Rev. Lett. 79(4):1997;653-656
-
(1997)
Phys. Rev. Lett.
, vol.79
, Issue.4
, pp. 653-656
-
-
Mestl, T.1
Bagley, R.J.2
Glass, L.3
-
27
-
-
0036722577
-
Effects of alternative connectivity on behavior of randomly constructed boolean networks
-
Oosawa C., Savageau M.A. Effects of alternative connectivity on behavior of randomly constructed boolean networks. Physica D. 170:2002;143-161
-
(2002)
Physica D
, vol.170
, pp. 143-161
-
-
Oosawa, C.1
Savageau, M.A.2
-
28
-
-
0028897360
-
Mechanism of eve stripe formation
-
Reinitz J., Sharp D.H. Mechanism of eve stripe formation. Mech. Dev. 49:1995;133-158
-
(1995)
Mech. Dev.
, vol.49
, pp. 133-158
-
-
Reinitz, J.1
Sharp, D.H.2
-
29
-
-
0035928464
-
A logical analysis of the gap gene system
-
Sanchez L., Thieffry D. A logical analysis of the gap gene system. J. Theor. Biol. 211:2001;115-141
-
(2001)
J. Theor. Biol.
, vol.211
, pp. 115-141
-
-
Sanchez, L.1
Thieffry, D.2
-
30
-
-
0036376097
-
From promoter sequence to expression: A probabilistic framework
-
Segal, E., Barash, Y., Simon, I., Friedman, N., Koller, D., 2002. From promoter sequence to expression: a probabilistic framework. In: Proceedings of the Sixth Annual International Conference on Computational Molecular Biology (RECOMB).
-
(2002)
Proceedings of the Sixth Annual International Conference on Computational Molecular Biology (RECOMB)
-
-
Segal, E.1
Barash, Y.2
Simon, I.3
Friedman, N.4
Koller, D.5
-
31
-
-
0002054202
-
Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation
-
Somogyi R., Sniegoski C.A. Modeling the complexity of genetic networks. understanding multigenic and pleiotropic regulation Complexity. 1:1996;45-63
-
(1996)
Complexity
, vol.1
, pp. 45-63
-
-
Somogyi, R.1
Sniegoski, C.A.2
-
32
-
-
0037687416
-
Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling
-
Tegner J., Yeung M.K.S., Hasty J., Collins J.J. Reverse engineering gene networks. integrating genetic perturbations with dynamical modeling Proc. Natl Acad. Sci. 100:2003;5944-5949
-
(2003)
Proc. Natl Acad. Sci.
, vol.100
, pp. 5944-5949
-
-
Tegner, J.1
Yeung, M.K.S.2
Hasty, J.3
Collins, J.J.4
-
35
-
-
0034644270
-
The segment polarity network is a robust developmental module
-
Von Dassow G., Meir E., Munro E.M., Odell G.M. The segment polarity network is a robust developmental module. Nature. 406:2000;188-192
-
(2000)
Nature
, vol.406
, pp. 188-192
-
-
Von Dassow, G.1
Meir, E.2
Munro, E.M.3
Odell, G.M.4
-
36
-
-
0037197936
-
Reverse engineering gene networks using singular value decomposition and robust regression
-
Yeung M.K.S., Tegner J., Collins J.J. Reverse engineering gene networks using singular value decomposition and robust regression. Proc. Natl Acad. Sci. 99:2002;6163-6168
-
(2002)
Proc. Natl Acad. Sci.
, vol.99
, pp. 6163-6168
-
-
Yeung, M.K.S.1
Tegner, J.2
Collins, J.J.3
-
37
-
-
0032549745
-
Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
-
Yuh C.-H., Bolouri H., Davidson E.H. Genomic cis-regulatory logic. experimental and computational analysis of a sea urchin gene Science. 279:1998;1896-1902
-
(1998)
Science
, vol.279
, pp. 1896-1902
-
-
Yuh, C.-H.1
Bolouri, H.2
Davidson, E.H.3
|