Genotyping of Korean isolates of infectious hematopoietic necrosis virus (IHNV) based on the glycoprotein gene

Archives of Virology

Volumn 152, Issue 11, 2007, Pages 2119-2124

  Kim, W S ^a   Oh, M J ^b   Nishizawa, T ^a   Park, J W ^c   Kurath, G ^d   Yoshimizu, M ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b Chonnam National University   (South Korea)

^c University of Ulsan   (South Korea)

^d WESTERN FISHERIES RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN; VIRUS PROTEIN;

ANIMAL; ANIMAL DISEASE; AQUACULTURE; ARTICLE; CELL LINE; CLASSIFICATION; DNA SEQUENCE; FISH DISEASE; GENETICS; GENOTYPE; INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; RAINBOW TROUT; VIROLOGY; VIRUS INFECTION;

ANIMALS; AQUACULTURE; CELL LINE; FISH DISEASES; GENOTYPE; GLYCOPROTEINS; INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; MOLECULAR SEQUENCE DATA; ONCORHYNCHUS MYKISS; PHYLOGENY; POLYMERASE CHAIN REACTION; RHABDOVIRIDAE INFECTIONS; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS;

EID: 36148966960     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-007-1027-9     Document Type: Article

References (19)

1. PJ Enzmann G Kurath D Fichtner SM Bergmann 2005 Infectious hematopoietic necrosis virus: monophyletic origin of European isolates from North American genogroup M Dis Aquat Org 66 187 195
2. Felsenstein J (2002) PHYLIP (Phylogeny inference package) version 3.6a3. Distributed by the author, Department of genome sciences, University of Washington, Seattle
3. KA Garver RM Troyer G Kurath 2003 Two distinct phylogenetic clades of infectious hematopoietic necrosis virus overlap within the Columbia River basin Dis Aquat Org 55 187 203
4. KH Kim YJ Kim SJ Jung TS Jung MJ Oh 2003 Isolation and characterization of infectious hematopoietic necrosis virus causing high mortality in rainbow trout Oncorhynchus mykiss J Fish Path 16 81 90 (In Korean with English abstract)
5. T Kimura M Yoshimizu 1991 Viral diseases of fish in Japan Annu Rev Fish Dis 1 67 82
6. G Kurath KG Ahern GD Pearson JC Leong 1985 Molecular cloning of the six mRNA species of infectious hematopoietic necrosis virus, a fish rhabdovirus, and gene order determination by R-loop mapping J Virol 53 469 476
7. G Kurath KA Garver RM Troyer EJ Emmenegger K Einer-Jensen ED Anderson 2003 Phylogeography of infectious hematopoietic necrosis virus in North America J Gen Virol 84 803 814
8. TA Miller J Rapp U Wastlhuber RW Hoffmann PJ Enzmann 1998 Rapid and sensitive reverse transcriptase-polymerase chain reaction based detection and differential diagnosis of fish pathogenic rhabdoviruses in organ samples and cultured cells Dis Aquat Org 34 13 20
9. SP Morzunov JR Winton ST Nichol 1995 The complete genome structure and phylogenetic relationship of infectious hematopoietic necrosis virus Virus Res 38 175 192
10. ST Nichol JE Rowe JR Winton 1995 Molecular epizootiology and evolution of the glycoprotein and non-virion protein genes of infectious hematopoietic necrosis virus, a fish rhabdovirus Virus Res 38 159 173
11. T Nishizawa S Kinoshita WS Kim S Higashi M Yoshimizu 2006 Nucleotide diversity of Japanese isolates of infectious hematopoietic necrosis virus (IHNV) based on the glycoprotein gene Dis Aquat Org 71 267 272
12. MA Park SG Sohn SD Lee SK Chun JW Park JL Fryer YC Hah 1993 Infectious haematopoietic necrosis virus from salmonids cultured in Korea J Fish Dis 16 471 478
13. G Perrière M Gouy 1996 WWW-Query: an on-line retrieval system for biological sequence banks Biochimie 78 364 369
14. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
15. JD Thompson DG Higgins TJ Gibson 1994 Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
16. RM Troyer G Kurath 2003 Molecular epidemiology of infectious hematopoietic necrosis virus reveals complex virus traffic and evolution within southern Idaho aquaculture Dis Aquat Org 55 175 185
17. RM Troyer SE LaPatra G Kurath 2000 Genetic analyses reveal unusually high diversity of infectious haematopoietic necrosis virus in rainbow trout aquaculture J Gen Virol 81 2823 2832
18. K Wolf 1988 Infectious hematopoietic necrosis Wolf Fish viruses and fish viral diseases Cornell University Press Ithaca, New York 83 114
19. M Yoshimizu 1996 Disease problems of salmonid fish in Japan caused by international trade Rev Sci Tech Off Int Epiz 15 533 549