Phylogeography of infectious haematopoietic necrosis virus in North America

Journal of General Virology

Volumn 84, Issue 4, 2003, Pages 803-814

  Kurath, Gael ^a   Garver, Kyle A ^a,b   Troyer, Ryan M ^a,b   Emmenegger, Eveline J ^a   Einer Jensen, Katja ^c   Anderson, Eric D ^a  

^a WESTERN FISHERIES RESEARCH CENTER   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN;

CONTROLLED STUDY; EPIDEMIC; GENETIC VARIABILITY; HEALTH SURVEY; HOST RANGE; HUMAN; INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; MOLECULAR EVOLUTION; NONHUMAN; NORTH AMERICA; NUCLEOTIDE SEQUENCE; PHYLOGEOGRAPHY; POPULATION MIGRATION; PRIORITY JOURNAL; REVIEW; RHABDOVIRUS; SALMONID; SEQUENCE ANALYSIS; VIRUS INFECTION; VIRUS ISOLATION; VIRUS PATHOGENESIS; WILD SPECIES;

ANIMALS; CANADA; FISH DISEASES; FISHERIES; FISHES; GLYCOPROTEINS; INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; NORTHWESTERN UNITED STATES; PHYLOGENY; RHABDOVIRIDAE INFECTIONS; SALMONIDAE; VARIATION (GENETICS); VIRAL PROTEINS;

INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; RHABDOVIRIDAE; RNA VIRUSES; SALMONIDAE;

EID: 0037383742     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.18771-0     Document Type: Review

References (67)

1. Amend, D. F. & Wood, J. W. (1972). Survey for infectious hematopoietic necrosis (IHN) virus in Washington salmon. Prog Fish-Cult 34, 143-147.
2. Amend, D. F. & Smith, L. (1975). Pathophysiology of infectious hematopoietic necrosis virus disease in rainbow trout, hematological and blood chemical changes in moribund fish. Infect Immun 11, 171-179.
3. Anderson, E. D., Engelking, H. M., Emmenegger, E. J. & Kurath, G. (2000). Molecular epidemiology reveals emergence of a virulent IHN virus strain in wild salmon and transmission to hatchery fish. J Aquat Anim Health 12, 85-99.
4. Arkush, K. D., Bovo, G., de Kinkelin, P., Winton, J. R., Wingfield, W. H. & Hedrick, R. P. (1989). Biochemical and antigenic properties of the first isolates of infectious hematopoietic necrosis virus from salmonid fish in Europe. J Aquat Anim Health 1, 148-153.
5. Benmansour, A., Basurco, B., Monnier, A. F., Vende, P., Winton, J. R. & de Kinkelin, P. (1997). Sequence variation of the glycoprotein gene identifies three distinct lineages within field isolates of viral haemorrhagic septicaemia virus, a fish rhabdovirus. J Gen Virol 78, 2837-2846.
6. Bilsel, P. A. & Nichol, S. T. (1990). Polymerase errors accumulating during natural evolution of the glycoprotein gene of vesicular stomatitis virus Indiana serotype isolates. J Virol 64, 4873-4883.
7. Bootland, L. M. & Leong, J. C. (1999). Infectious hematopoietic necrosis virus. In Fish Diseases and Disorders, vol. 3, pp. 57-112. Edited by P. T. K. Woo & D. W. Bruno. Wallingford, UK: CAB International.
8. Burgner, R. L. (1991). Life history of sockeye salmon (Oncorhynchus nerka). In Pacific Salmon Life Histories, pp. 1-118. Edited by C. Groot & L. Margolis. Vancouver, BC: UBC Press.
9. Busby, P. J., Wainwright, T. C., Bryant, G. J., Lierheimer, L. J., Waples, R. S., Waknitz, F. W. & Lagomarsino, I. V. (1996). Status Review of West Coast Steelhead From Washington, Idaho, Oregon, and California. US Department Commer., NOAA Tech. Memo. NMFS-NWFSC-27.
10. Busch, R. A. (1983). Viral disease considerations in the commercial trout industry in Idaho. In Proceedings of a Workshop on Viral Diseases of Salmonid Fishes in the Columbia River Basin, pp. 84-100. Edited by J. C. Leong & T. Y. Barila. Portland, OR: Bonneville Power Administration Special Publication.
11. Domingo, E., Biebricher, C. K., Eigen, M. & Holland, J. J. (2001). Experimental studies on viral quasispecies. In Quasispecies and RNA Virus Evolution: Principles and Consequences, pp. 90-91. Georgetown, TX: Landes Bioscience.
12. Emmenegger, E. J. & Kurath, G. (2002). Genetic characterization of infectious hematopoietic necrosis virus of coastal salmonid stocks in Washington State. J Aquat Anim Health 14, 25-34.
13. Emmenegger, R. J., Meyers, T. R., Burton, T. O. & Kurath, G. (2000). Genetic diversity and epidemiology of infectious hematopoietic necrosis virus in Alaska. Dis Aquat Org 40, 163-176.
14. Felsenstein, J. (1993). PHYLIP: Phylogeny inference package, version 3.5c. University of Washington, Seattle, WA, USA.
15. Fijan, N., Sulimanovič, D., Bearzotti, M., Muzinič, D., Zwillenberg, L. O., Chilmonczyk, S., Vautherot, J. F. & de Kinkelin, P. (1983). Some properties of the epithelioma papulosum cyprini (EPC) cell line from carp Cyprinus carpio. Ann Virol (Paris) 134, 207-220.
16. Grischkowsky, R. S. & Amend, D. F. (1976). Infectious hematopoietic necrosis virus, prevalence in certain Alaskan sockeye salmon, Oncorhynchus nerka. J Fish Res Board Can 33, 186-188.
17. Groberg, W. J. (1983). The status of viral fish diseases in the Columbia River Basin. In Proceedings of a Workshop on Viral Diseases of Salmonid Fishes in the Columbia River Basin, pp. 1-22, Edited by J. C. Leong & T. Y. Barila. Portland, OR: Bonneville Power Administration Special Publication.
18. Groberg, W. J. & Fryer, J. L. (1983). Increased Occurrence of Infectious Hematopoietic Necrosis Virus in Fish at Columbia River Basin Hatcheries, 1980-1982. Technical paper no. 6620. Corvallis, Oregon: Oregon Agricultural Experiment Station, ORESU-T-83-002.
19. Guenther, R. W., Watson, S. W. & Rucker, R. R. (1959). Etiology of sockeye salmon "virus" disease. U S Fish Wildl Serv Spec Sci Rep Fish 296, 1-10.
20. Gustafson, R. G., Wainwright, T. C., Winans, G. A., Waknitz, F. W., Parker, L. T. & Waples, R. S. (1997). Status Review of Sockeye Salmon From Washington and Oregon. US Department Commer., NOAA Tech. Memo. NMFS-NWFSC-33.
21. Healey, M. C. (1991). Life history of chinook salmon (Oncorhynchus tshawytscha). In Pacific Salmon Life Histories, pp. 311-394. Edited by C. Groot & L. Margolis. Vancouver, BC: UBC Press.
22. Heard, W. R. (1991). Life history of pink salmon (Oncorhynchus gorbuscha). In Pacific Salmon Life Histories, pp. 119-230. Edited by C. Groot & L. Margolis. Vancouver, BC: UBC Press.
23. Holmes, E. C., Woelk, C. H., Kassis, R. & Bourhy, H. (2002). Genetic constraints and the adaptive evolution of rabies virus in nature. Virology 292, 247-257.
24. Hsu, Y. L., Engelking, H. M. & Leong, J. C. (1986). Occurrence of different types of infectious hematopoietic necrosis virus in fish. Appl Environ Microbiol 52, 1353-1361.
25. Huang, C., Chien, M.-S., Landolt, M., Batts, W. & Winton, J. (1996). Mapping the neutralizing epitopes on the glycoprotein of infectious hematopoietic necrosis virus, a fish rhabdovirus. J Gen Virol 77, 3033-3040.
26. Kent, M. L., Traxler, G. S., Kieser, D., Richard, J., Dawe, S. C., Shaw, R. W., Prosperi-Porta, G., Ketcheson, J. & Evelyn, T. P. T. (1998). Survey of salmonid pathogens in ocean-caught fishes in British Columbia, Canada. J Aquat Anim Health 10, 211-219.
27. Kurath, G., Ahern, K. G., Pearson, G. D. & Leong, J. C. (1985). Molecular cloning of six mRNA species of infectious hematopoietic necrosis virus, a fish rhabdovirus, and gene order determined by R-loop mapping. J Virol 53, 469-476.
28. Jenkins, G. M., Rambaut, A., Pybus, O. G. & Holmes, E. C. (2002). Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis. J Mol Evol 54, 156-165.
29. Lannan, C. N., Winton, J. R. & Fryer, J. L. (1984). Fish cell lines, establishment and characterization of nine cell lines from salmonids. In Vitro 20, 671-676.
30. LaPatra, S. E. (1994). Infectious hematopoietic necrosis virus. In Suggested Procedures for the Detection and Identification of Certain Finfish and Shellfish Pathogens, 4th edn, pp. 1-5. Edited by J. C. Thoesen. Bethesda, MD: American Fisheries Society, Fish Health Section.
31. LaPatra, S. E., Lauda, K. A. & Jones, G. R. (1994). Antigenic variants of infectious hematopoietic necrosis virus and implications for vaccine development. Dis Aquat Org 20, 119-126.
32. Morzunov, S. P., Winton, J. R. & Nichol, S. T. (1995). The complete genome structure and phylogenetic relationship of infectious hematopoietic necrosis virus. Virus Res 38, 175-192.
33. Mulcahy, D. M., Tebbit, G. L., Groberg, W. J., McMichael, J. S., Winton, J. R., Hedrick, R. P., Philippon-Fried, M., Pilcher, K. S. & Fryer, J. L. (1980). The Occurrence and Distribution of Salmonid Viruses in Oregon. Technical paper no. 5504, Oregon Agricultural Experiment Station, Corvallis, Oregon, ORESU-T-80-004.
34. Mulcahy, D., Pascho, R. & Jenes, C. K. (1984). Comparison of in vitro growth characteristics of ten isolates of infectious hematopoietic necrosis virus. J Gen Virol 65, 2199-2207.
35. Myers, J. M., Kope, R. G., Bryant, G. J. & 8 other authors (1998). Status Review of Chinook Salmon from Washington, Idaho, Oregon, and California. US Department Commer., NOAA Tech. Memo. NMFS-NWFSC-35.
36. Nadin-Davis, S. A. (2000). Rabies and rabies-related viruses. In Molecular Epidemiology of Infectious Diseases, pp. 245-257. Edited by R. C. A. Thompson. New York: Oxford University Press.
37. Nei, M. (1987). Molecular Evolutionary Genetics. New York: Columbia University Press.
38. Nei, M. & Gojobori, T. (1986). Simple methods for estimating the numbers of synonymous and non-synonymous nucleotide substitutions. Mol Biol Evol 3, 418-426.
39. Nichol, S. T., Rowe, J. E. & Fitch, W. M. (1989). Glycoprotein evolution of vesicular stomatitis virus New Jersey. Virology 168, 281-291.
40. Nichol, S. T., Rowe, J. E. & Winton, J. R. (1995). Molecular epizootiology and evolution of the glycoprotein and non-virion protein genes of infectious hematopoietic necrosis virus, a fish rhabdovirus. Virus Res 38, 159-173.
41. Nicholas, J. W. & Hankin, D. G. (1988). Chinook Salmon Populations in Oregon Coastal River Basins: Description of Life Histories and Assessment of Recent Trends in Run Strengths. Ore. Dep. Fish Wildl., Fish. Div. Info. Rep., No. 88-1.
42. Oshima, K. H., Arakawa, C. K., Higman, K. H., Landolt, M. L., Nichol, S. T. & Winton, J. R. (1995). The genetic diversity and epizootiology of infectious hematopoietic necrosis virus. Virus Res 35, 123-141.
43. Pilcher, K. S. & Fryer, J. L. (1980). The viral diseases of fish, a review through 1978. I. Diseases of proven viral etiology. CRC Crit Rev Microbiol 7, 287-364.
44. Quinn, T. P. (1984). Homing and straying in Pacific salmon. In Mechanisms of Migration in Fishes, pp. 357-362. Edited by J. D. McCleave, G. P. Arnold, J. J. Dodson & W. H. Neill. New York: Plenum Press.
45. Quinn, T. P. (1993). A review of homing and straying of wild and hatchery-produced salmon. Fish Res 18, 29-44.
46. Ristow, S. S. & Arnzen, J. M. (1989). Development of monoclonal antibodies that recognize a type-2 specific and a common epitope on the nucleoprotein of infectious hematopoeitic necrosis virus. J Aquat Anim Health 1, 119-125.
47. Ristow, S. S. & Arnzen de Avila, J. (1991). Monoclonal antibodies to the glycoprotein and nucleoprotein of infectious hematopoietic necrosis virus (IHNV) reveal differences among isolates of the virus by fluorescence, neutralization, and electrophoresis. Dis Aquat Org 11, 105-115.
48. Roppel, P. (1982). Alaska Salmon Hatcheries 1891-1959. Alaska Historical Commission Studies no. 20, Library of Congress #82600591.
49. Rozas, J. & Rozas, R. (1999). DnaSP version 3, an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15, 174-175.
50. Rucker, R. R., Whipple, W. J., Parvin, J. R. & Evans, C. A. (1953). A contagious disease of salmon possibly of virus origin. U S Fish Wildl Serv Fish Bull 54, 35-46.
51. Salo, E. O. (1991). Life history of chum salmon (Oncorhynchus keta). In Pacific Salmon Life Histories, pp. 231-310. Edited by C. Groot & L. Margolis. Vancouver, BC: UBC Press.
52. Sandercock, F. K. (1991). Life history of coho salmon (Oncorhynchus kisutch). In Pacific Salmon Life Histories, pp. 395-446. Edited by C. Groot & L. Margolis. Vancouver, BC: UBC Press.
53. Sano, T., Nishimura, T., Okamoto, N., Yamazaki, T., Hanada, H. & Watanabe, Y. (1977). Studies on viral diseases of Japanese fish. VI. Infectious hematopoietic necrosis (IHN) of salmonids in the mainland of Japan. J Tokyo Univ Fish 63, 81-85.
54. Schneider, S., Kueffer, J. M., Roessli, D. & Excoffier, L. (1997). Arlequin, a software for population genetic data analysis version 1.1. Departments of Anthropology and Ecology, University of Geneva, Geneva, Switzerland.
55. Snow, M., Cunningham, C. O., Melvin, W. T. & Kurath, G. (1999). Analysis of the nucleoprotein gene identifies distinct lineages of viral haemorrhagic septicaemia virus within the European marine environment. Virus Res 63, 35-44.
56. Stone, D. M., Way, K. & Dixon, P. F. (1997). Nucleotide sequence of the glycoprotein of viral haemorrhagic septicaemia (VHS) viruses from different geographical areas, a link between VHS in farmed fish species and viruses isolated from North Sea cod (Gadus morhua L.). J Gen Virol 78, 1319-1326.
57. Swofford, D. L. (1998). PAUP* Phylogenetic Analysis Using Parsimony (*and other methods), Version 4. Sinauer Associates, Sunderland, MA, USA.
58. Thorpe, J. E. (1988). Salmon migration. Sci Prog 72, 345-370.
59. Tordo, N., Badrane, H., Bourhy, H. & Sacramento, D. (1993). Molecular epidemiology of lyssaviruses, focus on the glycoprotein and pseudogenes. Onderstepoort J Vet Res 60, 315-323.
60. Traxler, G. S., Roome, J. R., Lauda, K. A. & LaPatra, S. (1997). Appearance of infectious hematopoietic necrosis virus (IHNV) and neutralizing antibodies in sockeye salmon Oncorhynchus nerka during their migration and maturation period. Dis Aquat Org 28, 31-38.
61. Troyer, R. M., LaPatra, S. & Kurath, G. (2000). Genetic analyses reveal unusually high diversity of infectious hematopoietic necrosis virus in rainbow trout aquaculture. J Gen Virol 81, 2823-2832.
62. USDA Economic Research Service (2001). Aquaculture outlook (March 2001). http://usda.mannlib.cornell.edu/reports/erssor/livestock/ldp-aqs/2001/.
63. Watson, S. W., Guenther, R. W. & Rucker, R. R. (1954). A virus disease of sockeye salmon, interim report. U S Fish Wildl Serv Spec Sci Rep Fish 138, 1-36.
64. Wingfield, W. H., Fryer, J. L. & Pilcher, K. S. (1969). Properties of the sockeye salmon virus (Oregon strain). Proc Soc Exp Biol Med 130, 1055-1059.
65. Wingfield, W. H., Nims, L., Fryer, J. L. & Pilcher, K. S. (1970). Species specificity of the sockeye salmon virus (Oregon strain) and its cytopathic effects in salmonid cell lines. In A Symposium on Diseases of Fishes and Shellfishes, pp. 319-326. Edited by S. F. Snieszko. Washington, DC: American Fisheries Society.
66. Winton, J. R., Arakawa, C. K., Lannan, C. N. & Fryer, J. L. (1988). Neutralizing monoclonal antibodies recognize antigenic variants among isolates of infectious hematopoietic necrosis virus. Dis Aquat Org 4, 199-204.
67. Wolf, K. (1988). Fish Viruses and Fish Viral Diseases, pp. 83-114. Ithaca: Cornell University Press.