Small RNA mediated silencing to target Tomato leaf curl virus

Journal of Plant Interactions

Volumn 2, Issue 4, 2007, Pages 213-218

  Praveen, Shelly ^a   Ramesh, S V ^a   Koundal, Vikas ^a   Mishra, Anil K ^a   Jain, R K ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

Author keywords

amiRNA; Begomovirus; miRNA; siRNA; Tomato leaf curl virus

Indexed keywords

BEGOMOVIRUS; LYCOPERSICON ESCULENTUM; TOMATO LEAF CURL VIRUS;

EID: 35948979268     PISSN: 17429145     EISSN: 17429153     Source Type: Journal    
DOI: 10.1080/17429140701684731     Document Type: Article

References (27)

1. Bartel DP. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 23; 116(2):281-297.
2. Bucher E, Lohuis D, Van Poppel PMJA, Dimitriadou CG, Goldbach R, Prins M. 2006. Multiple virus resistance at a high frequency using a single transgene construct. J Gen Virol 87:3697-3701.
3. Caplen NJ, Parris S, Imani F, Fire A, Morgen RA. 2001. Specific inhibition of gene expression by small double stranded RNAs in invertebrate and vertebrate systems. Proc Natl Acad Sci USA 98:9742-9747.
4. Chellappan P, Vanitharani R, Fauquet CM. 2004. Short interfering RNA accumulation correlates with host recovery in DNA virus-infected hosts, and gene silencing targets specific viral sequences. J Virol 78:7465-7477.
5. Dasgupta A, Sinha SK, Praveen S. 2004. Structure of replication initiator protein unites diverse viruses causing tomato leaf curl disease (ToLCD). Plant Sci 166:1063-1067.
6. Dougherty WG, Parks TD. 1995. Transgenes and gene suppression: telling us something new? Curr Opin Cell Biol 7:399-405.
7. Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T. 2001a. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411:494-498.
8. Elbashir SM, Lendeckel W, Tuschl T. 2001b. RNA interference is mediated by 21 and 22-nucleotide RNAs. Genes Dev 15:188-200.
9. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806-811.
10. Hanley-Bowdoin L, Settlage SB, Orzoco BM, Nagar S, Robertson D. 1999. Geminiviruses: Model for plant DNA replication, transcription, and Cell cycle regulation. Crit Rev Plant Sci 18:71-106.
11. Henschel A, Buchholz F, Habermann B. 2004. DEQOR: A web-based tool for the design and quality control of siRNAs. Nucleic Acids Res 32 (Web Server issue):W113-120.
12. Holen T, Amarzguioui M, Wiiger MT, Babaie E, Prydz H. 2002. Positional effects of short interfering RNAs targeting the human coagulation trigger Tissue Factor. Nucleic Acids Res 30:1757-1766.
13. Lin J. 2002. Jack Lin's siRNA Sequence Finder. URL: http://www.sinc. sunysb.edu/Stu/shilin/rnai.html.
14. Matthew W, Jones-Rhoades, Bartel DP, Bartel B. 2006. Micro-RNAs and their regulatory roles in plants. Annu Rev Plant Biol 57:19-53.
15. McCormick S. (1991) Transformation of tomato with Agrobacterium tumefaciens. Plant Tissue culture. Manual B6, 1-9.
16. Niu QW, Lin SS, et al. 2006. Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nature Biotechnol 24:1420-1428.
17. Pooggin M, Shivaprasad K, Veluthambi K, Hohn T. 2003. RNAi targeting of DNA virus in plants. Nature Biotechnol 21(2):131-132.
18. Praveen S, Mishra AK, Antony G. 2006. Viral suppression in transgenic plants expressing chimeric transgene from tomato leaf curl virus and cucumber mosaic virus. Plant Cell, Tissue Organ Culture 84:47-53.
19. Praveen S, Mishra AK, Dasgupta A. 2005. Anti sense suppression of replicase gene expression recovers tomato plants from leaf curl virus infection. Plant Sci 168:1011-1014.
20. Ramesh SV, Mishra AK, Praveen S. 2007. Hairpin RNA-mediated strategies for silencing of Tomato leaf curl virus AC1 and AC4 genes for effective resistance in plants. Oligonucleotide 17:251-257..
21. Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D. 2006. Highly specific gene silencing by artificial microRNAs in Arabidopsis. The Plant Cell 18:1121-1133.
22. Shivaprasad PV, Akbergenov R, Trinks D, Rajeswaran R, Veluthambi K, Hohn T, Pooggin MM. 2005. Promoters, transcripts, and regulatory proteins of mungbean yellow mosaic gemini virus. J Virol 79:8149-8163.
23. Tran N, Cairns MJ, Dawes IW, Arndt GM. 2003. Expressing functional siRNAs in mammalian cells using convergent transcription. BMC Biotechnol 3:21.
24. Townsend R, Watts J, Stanley J. 1986. Synthesis of viral DNA forms in Nicotiana plumbaginifolia protoplasts inoculated with cassava latent virus (CLV): Evidence for the independent replication of one component of the CLV genome. Nucleic Acids Res 14:1253-1265.
25. Varma A, Malathi VG. 2003. Emerging geminivirus problems: A serious threat to crop production. Ann Appl Biol 142:145-164.
26. Yiu SM, Wong PWH, Lam TW, Mui YC, Kung HF, Lin M, Cheung YT. 2005. Filtering of ineffective siRNAs and improved siRNA Design tool. Bioinformatics 21(2):144-151.
27. Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406-3415.