Structure of replication initiator protein unites diverse viruses causing tomato leaf curl disease (ToLCD)

Plant Science

Volumn 166, Issue 4, 2004, Pages 1063-1067

  Dasgupta, Arupratan ^a   Sinha, Subodh K ^a   Praveen, Shelly ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

Author keywords

3D structure; Motifs; Replication initiator; Tomato leaf curl virus

Indexed keywords

CATALYSIS; DNA; GENES; OLIGOMERS; PROTEINS; VIRUSES;

CATALYTIC RESIDUES; NUCLEOTIDE CODINGS;

PLANTS (BOTANY);

ALEYRODIDAE; GEMINIVIRIDAE; LYCOPERSICON ESCULENTUM; TOMATO LEAF CURL NEW DELHI VIRUS; TOMATO LEAF CURL VIRUS;

EID: 1542321144     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2003.12.024     Document Type: Article

References (25)

1. Saunders K., Lucy A., Stanley J. DNA forms of the geminivirus of African cassava mosaic virus consistent with a rolling circle mechanism of replication. Nucl. Acids Res. 19:1991;2325-2330.
2. Stenger D.C., Revington G.N., Stevenson M.C., Bisaro D.M. Replicational release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. Proc. Natl. Acad. Sci. U.S.A. 88:1991;8029-8033.
3. Lazarowitz S. Geminiviruses. Genome structure and gene function. Crit. Rev. Plant Sci. 11:1992;327-349.
4. Fontes E.P.B., Eagle P.A., Sipe P.A., Luckow V.A., Hanley-Bowdoin L. Interaction between a geminivirus replication protein and origin DNA is essential for viral replication. J. Biol. Chem. 269:1994;8459-8465.
5. Jupin I., Hericourt F., Benz B., Gronenborn B. DNA replication specificity of TYLCV geminivirus is mediated by the amino terminal 116 amino acids of rep protein. FEBS Lett. 262:1995;116-120.
6. Choi I.R., Stenger D.C. The strain-specific cis-acting element of beet curly top geminivirus DNA replication maps to the directly repeated motif of the Ori. Virology. 226:1996;122-126.
7. Gladfelter H.J., Eagle P.A., Fontes E.P.B., Batts L., Hanley-Bowdoin L. Two domains of the AL1 protein mediate geminivirus origin recognition. Virology. 239:1997;186-197.
8. Chatterji A., Padidam M., Beachy R.N., Fauquet C.M. Identification of replication specificity determinants in two strains of tomato leaf curl virus from New Delhi. J. Virol. 73:1999;5481-5489.
9. Fauquet C.M., Stanley J. Geminivirus classification and nomenclature: progress and problems. Ann. Appl. Biol. 142:2003;165-189.
10. Khan S.A. Plasmid rolling-circle replication: recent developments. Mol. Microbiol. 37:2000;477-484.
11. Noirot-Gros M.F., Bidnenko V., Ehrlich S.D. Active site of the replication protein of the rolling circle plasmid pC194. EMBO J. 13:1994;4412-4420.
12. Campos-Olivas R., Louis J.M., Clerot D., Gronenborn B., Gronenborn A.M. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc. Natl. Acad. Sci. U.S.A. 99:2002;10310-10315.
13. Padidam M., Beachy R.N., Fauquet C.M. Tomato leaf curl geminivirus from India has bipartite genome and coat protein is not essential for infectivity. J. Gen. Virol. 76:1995;25-35.
14. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41:1999;95-98.
15. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24:1997;4876-4882.
16. Combet C., Jambon M., Deleage G., Geourjon C. Geno3D: automatic comparative molecular modeling of protein. Bioinformatics. 18:2002;213-214.
17. Laskowski R.A., MacArthur M.W., Moss D.S., Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structure. J. Appl. Cryst. 26:1993;283-291.
18. Guex N., Peitsch M.C. SWISS-MODEL and the SwissPDBViewer: an environment for comparative protein modeling. Electrophoresis. 18:1997;2714-2723.
19. Orozco B.M., Gladfelter H.J., Settlage S.B., Eagle P.A., Gentry R.N., Hanley-Bowdoin L. Multiple cis elements contribute to geminivirus origin function. Virology. 242:1998;346-358.
20. Orozco B.M., Miller A.B., Settlage S.B., Hanley-Bowdoin L. Functional domains of a geminivirus replication protein. J. Biol. Chem. 272:1997;9840-9846.
21. Harrison B.D., Robinson D.J. Natural genomic and antigenic variation in whitefly-transmitted geminiviruses (Begomoviruses). Annu. Rev. Phytopathol. 37:1999;369-398.
22. Pabo C.O., Sauer R.T. Transcription factors: structural families and principles of DNA recognition. Annu. Rev. Biochem. 61:1992;1053-1095.
23. Laufs J., Traut W., Heyraud F., Matzeit V., Rogers S.G., Schell J., Gronenborn B. In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. U.S.A. 92:1995;3879-3883.
24. Orozco B.M., Hanley-Bowdoin L. A DNA structure is required for geminivirus origin function. J. Virol. 270:1996;148-158.
25. Argüello-Astroga G.R., Ruiz-Medrano R. An iteron-related domain is associated to Motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid-base pairs by comparative approach. Arch. Virol. 146:2001;1465-1485.