Short-term effects of amoxicillin on bacterial communities in manured soil

FEMS Microbiology Ecology

Volumn 62, Issue 3, 2007, Pages 290-302

  Binh, Chu Thi Thanh ^a   Heuer, Holger ^a   Gomes, Newton C Marcial ^a   Kotzerke, Anja ^b   Fulle, Melanie ^b   Wilke, Bernd Michael ^b   Schloter, Michael ^c   Smalla, Kornelia ^a  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b TECHNISCHE UNIVERSITÄT BERLIN   (Germany)

^c INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

Amoxicillin; DGGE; Exogenous plasmid isolation; Manure; Resistance; Soil bacterial community

Indexed keywords

AMOXICILLIN;

ABUNDANCE; ANTIBIOTIC RESISTANCE; COMMUNITY STRUCTURE; MANURE; MICROBIAL COMMUNITY; PLASMID; SOIL AMENDMENT; SOIL MICROORGANISM;

ANTIBIOTIC RESISTANCE; ARTICLE; COLONY FORMING UNIT; CONTROLLED STUDY; DOT HYBRIDIZATION; MANURE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SOIL; SOIL MICROFLORA; SOUTHERN BLOTTING;

AMOXICILLIN; ANTI-BACTERIAL AGENTS; ARTHROBACTER; BACTERIA; COLONY COUNT, MICROBIAL; CONJUGATION, GENETIC; CULTURE MEDIA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENES, RRNA; LACTOBACILLUS; MANURE; MOLECULAR SEQUENCE DATA; PENICILLIN RESISTANCE; PLASMIDS; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS);

EID: 35948933107     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2007.00393.x     Document Type: Article

References (42)

1. Alonso A, Sánchez P Martínez JL (2001) Environmental selection of antibiotic resistance genes. Environ Microbiol 3 : 1 9.
2. Barnes AC, Hastings TS Amyes SGB (1994) Amoxycillin resistance in Scottish isolates of Aeromonas salmonicida. J Fish Diseases 17 : 357 363.
3. Bush K (1997) The evolution of β-lactamases. Antibiotic Resistance, Origins, Evolution, Selection and Spread. CIBA Foundation Symposium 20 (Chadwick DJ Goode J, eds), pp. 152 163. John Wiley & Sons, Chichester.
4. Chee-Sanford JC, Aminov RI, Krapac IJ, Garrigues-Jeanjean N Mackie RI (2001) Occurrence and diversity of tetracycline resistance genes in lagoons and groundwater underlying two swine production facilities. Appl Environ Microbiol 67 : 1494 1502.
5. oxa-1 genes in Enterobacteriaceae. FEMS Microbiol Lett 223 : 147 151.
6. Davison J (1999) Genetic exchange between bacteria in the environment. Plasmid 42 : 73 91.
7. Dios PD, Carmona IT, Posse JL, Henríquez JM, Feijoo JF Fernández MA (2006) Comparative efficacies of amoxicillin, clindamycin, and moxifloxacin in prevention of bacteremia following dental extractions. Antimicrob Agents Chemother 50 : 2996 3002.
8. Esiobu N, Armenta L Ike J (2002) Antibiotic resistance in soil and water environments. Environ Health Res 12 : 133 144.
9. Götz A, Pukall R, Tietze E, Prager R, Tschäpe H, van Elsas JD Smalla K (1996) Detection and characterization of broad-host-range plasmids in environmental bacteria by PCR. Appl Environ Microbiol 62 : 2621 2628.
10. Halling-Sørensen B, Nielsen SN, Lanzky PF, Ingerslev F, Lutzhøft HCH Jørgensen SE (1998) Occurrence, fate, and effects of pharmaceutical substances in the environment - a review. Chemosphere 36 : 357 393.
11. Henriques IS, Fonseca F, Alves A, Saavedra MJ Correia A (2006a) Occurrence and diversity of integrons and β-lactamase genes among ampicillin-resistant isolates from estuarine waters. Res Microbiol 157 : 938 947.
12. Henriques IS, Moura A, Alves A, Saavedra MJ Correia A. (2006b) Analysing diversity among β-lactamase encoding genes in aquatic environments. FEMS Microbiol Ecol 56 : 418 429.
13. Heuer H Smalla K (2007) Manure and sulfadiazine synergistically increased bacterial antibiotic resistance in soil over at least two months. Environ Microbiol 9 : 657 666.
14. Heuer H, Krsek M, Baker P, Smalla K Wellington EMH (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63 : 3233 3241.
15. Heuer H, Wieland G, Schönfeld J, Schönwälder A, Gomes NCM Smalla K (2001) Bacterial community profiling using DGGE or TGGE analysis. Environmental Molecular Microbiology: Protocols and Applications (Rochelle PA, ed.), pp. 178 190. Horizon Scientific Press, Wymondham, UK.
16. Heuer H, Krögerrecklenfort E, Egan S et al 2002) Gentamicin resistance genes in environmental bacteria: prevalence and transfer. FEMS Microbiol Ecol 42 : 289 302.
17. Jørgensen SE Halling-Sørensen B (2000) Drugs in the environment. Chemosphere 40 : 691 699.
18. Karthikeyan KG Meyer MT (2006) Occurrence of antibiotics in wastewater treatment facilities in Wascosin, USA. Sci Total Environ 361 : 196 207.
19. Kim SR, Nonaka L Suzuki S (2004) Occurrence of tetracycline resistance genes tet(M) and tet(S) in bacteria from marine aquaculture sites. FEMS Microbiol Lett 237 : 147 156.
20. Kropf S, Heuer H, Grüning M Smalla K (2004) Significance test for comparing complex microbial community fingerprints using pairwise similarity measures. J Microbiol Methods 57 : 187 195.
21. Leser TD, Amenuvor JZ, Jensen TK, Lindecrona RH, Boye M Møller K (2002) Culture-independent analysis of gut bacteria: the pig gastrointestinal tract microbiota revisited. Appl Environ Microbiol 68 : 673 690.
22. Livermore DM (1995) β-lactamases in laboratory and clinical resistance. Clin Microbiol Rev 8 : 557 584.
23. Mabilat C Courvalin P (1990) Development of oligotyping for characterization and molecular epidemiology of TEM β-lactamases in members of the family Enterobacteriaceae. Antimicrob Agents Chemother 34 : 2210 2216.
24. Nagai K, Davies TA, Jacobs MR Appelbaum PC (2002) Effects of amino acid alterations in penicillin-binding proteins (pbps) 1a, 2b, and 2x on PBP affinities of penicillin, ampicillin, amoxicillin, Cefditoren, Cefuroxime, Cefprozil, and Cefaclor in 18 clinical isolates of penicillin-susceptible, -intermediate, and -resistant Pneumococci. Antimicrob Agents Chemother 46 : 1273 1280.
25. Perreten V Boerlin P (2003) A new sulfonamide resistance gene (sul3) in Escherichia coli is widespread in the pig population of Switzerland. Antimicrob Agents Chemother 47 : 1169 1172.
26. Pukall R, Tschäpe H Smalla K (1996) Monitoring the spread of broad host and narrow host range plasmids in soil microcosms. FEMS Microbiol Ecol 20 : 53 66.
27. Rademaker JLW De Bruijn FJ (2004) Computer-assisted analysis of molecular fingerprint profiles and database construction. Molecular Microbial Ecology Manual (Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans ADL van Elsas JD, eds), pp. 1397 1446. Kluwer Academic Publishers, Dordrecht, The Netherlands.
28. Robin F, Delmas J, Chanal C, Sirot D, Sirot J Bonnet R (2005) TEM-109 (CMT-5), a natural complex mutant of TEM-1β-Lactamase combining the amino acid substitutions of TEM-6 and TEM-33 (IRT-5). Antimicrob Agents Chemother 49 : 4443 4447.
29. Salyers AA (2002) An overview of the genetic basis of antibiotic resistance in bacteria and its implications for agriculture. Animal Biotechnol 13 : 1 5.
30. Sambrook J, Fritsch EF Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
31. Schweizer G, Ehrensperger F, Torgerson PR Braun U (2006) Clinical findings and treatment of 94 cattle presumptively diagnosed with listeriosis. Vet Rec 158 : 588 592.
32. Sengeløv G, Agersø Y, Halling-Sørensen B, Baloda SB, Andersen JS Jensen LB (2003) Bacterial antibiotic resistance levels in Danish farmland as a result of treatment with pig manure slurry. Environ Int 28 : 587 595.
33. Smalla K Sobecky PA (2002) The prevalence and diversity of mobile genetic elements in bacterial communities of different environmental habitats: insights gained from different methodological approaches. FEMS Microbiol Ecol 42 : 165 175.
34. Smalla K, Heuer H, Götz A, Niemeyer D, Krögerrecklenfort E Tietze E (2000) Exogenous isolation of antibiotic resistance plasmids from piggery manure slurries reveals a high prevalence and diversity of incQ-like plasmids. Appl Environ Microbiol 66 : 4854 4862.
35. Thiele-Bruhn S (2003) Pharmaceutical antibiotic compounds in soil - a review. J Plant Nutr Soil Sci 166 : 145 167.
36. Tschäpe H (1994) The spread of plasmids as a function of bacterial adaptability. FEMS Microbiol Ecol 15 : 23 32.
37. Watanabe K, Tanaka A, Imase K, Tokunaga K, Sugano H, Kai A, Ishida H, Itoh T Takahashi S (2005) Amoxicillin resistance in Helicobacter pylori: studies from Tokyo, Japan from 1985 to 2003. Helicobacter 10 : 4 11.
38. Wegener HC (2003) Antibiotics in animal feed and their role in resistance development. Curr Opin Microbiol 6 : 439 445.
39. Wiener P, Egan S Wellington EMH (1998) Evidence for transfer of antibiotic-resistance genes in soil populations of streptomycetes. Mol Ecol 7 : 1205 1216.
40. Witte W (1998) Medical consequences of antibiotic use in agriculture. Science 279 : 996 997.
41. Worthy KC Governale LA (2006) Trends in outpatient prescription usage in the U.S., 2002-2005. 12th Annual FDA Science Forum, April 18-20, 2006 ().
42. Zhou J, Xia B, Huang H, Palumbo AV Tiedje JM (2004) Microbial diversity and heterogeneity in sandy subsurface soils. Appl Environ Microbiol 70 : 1723 1734.