Kinetic resolution of a tryptophan-radical intermediate in the reaction cycle of Paracoccus denitrificans cytochrome c oxidase

Journal of Biological Chemistry

Volumn 282, Issue 43, 2007, Pages 31580-31591

  Wiertz, Frank G M ^a   Richter, Oliver Matthias H ^b   Ludwig, Bernd ^b   De Vries, Simon ^a  

^a DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^b GOETHE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

PROTON PUMPING; REDOX-ACTIVE RESIDUES; TRYPTOPHAN NEUTRAL RADICALS;

DENITRIFICATION; ELECTRON TRANSITIONS; PARAMAGNETIC RESONANCE; PROTONS; REACTION KINETICS;

ENZYME KINETICS;

COPPER DERIVATIVE; CYTOCHROME C OXIDASE; HEME DERIVATIVE; PROTON PUMP; TRYPTOPHAN 272; TRYPTOPHAN DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; ELECTRON SPIN RESONANCE; ELECTRON TRANSPORT; LOW TEMPERATURE; OXIDATION REDUCTION REACTION; PARACOCCUS DENITRIFICANS; PRIORITY JOURNAL; ULTRAVIOLET SPECTROSCOPY;

COMPUTER SIMULATION; COPPER; ELECTRON SPIN RESONANCE SPECTROSCOPY; ELECTRON TRANSPORT; ELECTRON TRANSPORT COMPLEX IV; FREEZING; HEME; KINETICS; OXIDATION-REDUCTION; PARACOCCUS DENITRIFICANS; SPECTROPHOTOMETRY, ULTRAVIOLET; TRYPTOPHAN;

PARACOCCUS DENITRIFICANS;

EID: 35748959066     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M705520200     Document Type: Article

References (76)

1. Wasser, I. M., de Vries, S., Moënne-Loccoz, P., Schröder, I., and Karlin, K. D. (2002) Chem. Rev. 102, 1201-1234
2. Richter, O. M. H., and Ludwig, B. (2003) Rev. Physiol. Biochem. Pharmacol. 147, 47-74
3. Michel, H., Behr, J., Harrenga, A., and Kannt, A. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 329-356
4. Hendriks, J., Oubrie, A., Castresana, J., Urbani, A., Gemeinhardt, S., and Saraste, M. (2000) Biochim. Biophys. Acta 1459, 266-273
5. Cherepanov, A. V., and De Vries, S. (2004) Biochim. Biophys. Acta 1656, 1-31
6. Babcock, G. T., and Wikstrom, M. (1992) Nature 356, 301-309
7. Pereira, M. M., Santana, M., and Teixeira, M. (2001) Biochim. Biophys. Acta 1505, 185-208
8. Ostermeier, C., Harrenga, A., Ermler, U., and Michel, H. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 10547-10553
9. Wikstrom, M. (2004) Biochim. Biophys. Acta 1655, 241-247
10. Verkhovsky, M. I., Belevich, I., Bloch, D. A., and Wikstrom, M. (2006) Biochim. Biophys. Acta 1757, 401-407
11. Ruitenberg, M., Kannt, A., Bamberg, E., Fendler, K., and Michel, H. (2002) Nature 417, 99-102
12. Faxen, K., Gilderson, G., Adelroth, P., and Brzezinski, P. (2005) Nature 437, 286-289
13. Belevich, I., Verkhovsky, M. I., and Wikstrom, M. (2006) Nature 440, 829-832
14. Iwata, S., Ostermeier, C., Ludwig, B., and Michel, H. (1995) Nature 376, 660-669
15. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1995) Science 269, 1069-1074
16. Svensson-Ek, M., Abramson, J., Larsson, G., Tornroth, S., Brzezinski, P., and Iwata, S. (2002) J. Mol. Biol. 321, 329-339
17. Yoshikawa, S., Muramoto, K., Shinzawa-Itoh, K., Aoyama, H., Tsukihara, T., Ogura, T., Shimokata, K., Katayama, Y., and Shimada, H. (2006) Biochim. Biophys. Acta 1757, 395-400
18. Yoshikawa, S., Muramoto, K., Shinzawa-Itoh, K., Aoyama, H., Tsukihara, T., Shimokata, K., Katayama, Y., and Shimada, H. (2006) Biochim. Biophys. Acta 1757, 1110-1116
19. Witt, H., Malatesta, F., Nicoletti, F., Brunori, M., and Ludwig, B. (1998) J. Biol. Chem. 273, 5132-5136
20. Drosou, V., Malatesta, F., and Ludwig, B. (2002) Eur. J. Biochem. 269, 2980-2988
21. Blackburn, N. J., Barr, M. E., Woodruff, W. H., van der Oost, J., and de Vries, S. (1994) Biochemistry 33, 10401-10407
22. Brzezinski, P. (2004) Trends Biochem. Sci. 29, 380-387
23. Adelroth, P., Ek, M. S., Mitchell, D. M., Gennis, R. B., and Brzezinski, P. (1997) Biochemistry 36, 13824-13829
24. Schmidt, B., McCracken, J., and Ferguson-Miller, S. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 15539-15542
25. Schmidt, B., Hillier, W., McCracken, J., and Ferguson-Miller, S. (2004) Biochim. Biophys. Acta 1655, 248-255
26. Florens, L., Schmidt, B., McCracken, J., and Ferguson-Miller, S. (2001) Biochemistry 40, 7491-7497
27. Espe, M. P., Hosler, J. P., Ferguson-Miller, S., Babcock, G. T., and McCracken, J. (1995) Biochemistry 34, 7593-7602
28. Szundi, I., Cappuccio, J., and Einarsdottir, O. (2004) Biochemistry 43, 15746-15758
29. Sucheta, A., Szundi, I., and Einarsdottir, O. (1998) Biochemistry 37, 17905-17914
30. Sucheta, A., Georgiadis, K. E., and Einarsdottir, O. (1997) Biochemistry 36, 554-565
31. Einarsdottir, O., and Szundi, I. (2004) Biochim. Biophys. Acta 1655, 263-273
32. Varotsis, C., Zhang, Y., Appelman, E. H., and Babcock, G. T. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 237-241
33. Proshlyakov, D. A., Pressler, M. A., and Babcock, G. T. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 8020-8025
34. Proshlyakov, D. A., Ogura, T., Shinzawa-Itoh, K., Yoshikawa, S., Appelman, E. H., and Kitagawa, T. (1994) J. Biol. Chem. 269, 29385-29388
35. Ogura, T., and Kitagawa, T. (2004) Biochim. Biophys. Acta 1655, 290-297
36. Kitagawa, T. (2000) J. Inorg. Biochem. 82, 9-18
37. Han, S. W., Ching, Y. C., and Rousseau, D. L. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 2491-2495
38. Han, S., Takahashi, S., and Rousseau, D. L. (2000) J. Biol. Chem. 275, 1910-1919
39. Siletsky, S. A., Han, D., Brand, S., Morgan, J. E., Fabian, M., Geren, L., Millett, F., Durham, B., Konstantinov, A. A., and Gennis, R. B. (2006) Biochim. Biophys. Acta 1757, 1122-1132
40. Hansson, O., Karlsson, B., Aasa, R., Vanngard, T., and Malmstrom, B. G. (1982) EMBO J. 1, 1295-1297
41. Proshlyakov, D. A., Pressler, M. A., DeMaso, C., Leykam, J. F., DeWitt, D. L., and Babcock, G. T. (2000) Science 290, 1588-1591
42. Morgan, J. E., Verkhovsky, M. I., Palmer, G., and Wikstrom, M. (2001) Biochemistry 40, 6882-6892
43. Pilet, E., Jasaitis, A., Liebl, U., and Vos, M. H. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 16198-16203
44. MacMillan, F., Budiman, K., Angerer, H., and Michel, H. (2006) FEBS Lett. 580, 1345-1349
45. Bloch, D., Belevich, I., Jasaitis, A., Ribacka, C., Puustinen, A., Verkhovsky, M. I., and Wikstrom, M. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 529-533
46. Wiertz, F. G. M., Richter, O. M. H., Cherepanov, A. V., MacMillan, F., Ludwig, B., and de Vries, S. (2004) FEBS Lett. 575, 127-130
47. Lu, S., Wiertz, F. G. M., de Vries, S., and Moenne-Loccoz, P. (2005) J. Raman Spectrosc. 36, 359-362
48. Wiertz, F. G. M., and de Vries, S. (2006) Biochem. Soc. Transact. 34, 136-138
49. Ballou, D. P. (1978) Methods Enzymol. 54, 85-93
50. Rigby, S. E., Junemann, S., Rich, P. R., and Heathcote, P. (2000) Biochemistry 39, 5921-5928
51. Rich, P. R., Rigby, S. E., and Heathcote, P. (2002) Biochim. Biophys. Acta 1554, 137-146
52. Fabian, M., and Palmer, G. (1995) Biochemistry 34, 13802-13810
53. Ludwig, B. (1986) Methods Enzymol. 126, 153-159
54. Hendler, R. W., Pardhasaradhi, K., Reynafarje, B., and Ludwig, B. (1991) Biophys. J. 60, 415-423
55. Käss, H., MacMillan, F., Ludwig, B., and Prisner, T. F. (2000) J. Phys. Chem. B 104, 5362-5371
56. Budiman, K., Kannt, A., Lyubenova, S., Richter, O. M. H., Ludwig, B., Michel, H., and MacMillan, F. (2004) Biochemistry 43, 11709-11716
57. von Wachenfeldt, C., de Vries, S., and van der Oost, J. (1994) FEBS Lett. 340, 109-113
58. Salomonsson, L., Faxen, K., Adelroth, P., and Brzezinski, P. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 17624-17629
59. Nyquist, R. M., Heitbrink, D., Bolwien, C., Gennis, R. B., and Heberle, J. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 8715-8720
60. Pogni, R., Baratto, M. C., Teutloff, C., Giansanti, S., Ruiz-Duenas, F. J., Choinowski, T., Piontek, K., Martinez, A. T., Lendzian, F., and Basosi, R. (2006) J. Biol. Chem. 281, 9517-9526
61. Lendzian, F., Sahlin, M., MacMillan, F., Bittl, R., Fiege, R., Potsch, S., Sjoberg, B.-M., Graslund, A., Lubitz, W., and Lassmann, G. (1996) J. Am. Chem. Soc. 118, 8111-8120
62. Bleifuss, G., Kolberg, M., Potsch, S., Hofbauer, W., Bittl, R., Lubitz, W., Graslund, A., Lassmann, G., and Lendzian, F. (2001) Biochemistry 40, 15362-15368
63. Svistunenko, D. A., Wilson, M. T., and Cooper, C. E. (2004) Biochim. Biophys. Acta 1655, 372-380
64. Ivancich, A., Jakopitsch, C., Auer, M., Un, S., and Obinger, C. (2003) J. Am. Chem. Soc. 125, 14093-14102
65. Ivancich, A., Dorlet, P., Goodin, D. B., and Un, S. (2001) J. Am. Chem. Soc. 123, 5050-5058
66. Farver, O., Grell, E., Ludwig, B., Michel, H., and Pecht, I. (2006) Biophys. J. 90, 2131-2137
67. Blair, D. F., Witt, S. N., and Chan, S. I. (1985) J. Am. Chem. Soc. 107, 7389-7399
68. Wikstrom, M., and Verkhovsky, M. I. (2006) Biochim. Biophys. Acta 1757, 1047-1051
69. Ribacka, C., Verkhovsky, M. I., Belevich, I., Bloch, D. A., Puustinen, A., and Wikstrom, M. (2005) Biochemistry 44, 16502-16512
70. Adelroth, P., Brzezinski, P., and Malmstrom, B. G. (1995) Biochemistry 34, 2844-2849
71. Moser, C. C., Page, C. C., and Dutton, P. L. (2006) Philos. Trans. R. Soc. Lond B Biol. Sci. 361, 1295-1305
72. Baldwin, J., Krebs, C., Ley, B. A., Edmondson, D. E., Huynh, B. H., and Bollinger, J. M. (2000) J. Am. Chem. Soc. 122, 12195-12206
73. Zaslavsky, D., Smirnova, I. A., Adelroth, P., Brzezinski, P., and Gennis, R. B. (1999) Biochemistry 38, 2307-2311
74. Pecoraro, C., Gennis, R. B., Vygodina, T. V., and Konstantinov, A. A. (2001) Biochemistry 40, 9695-9708
75. Tommos, C., Skalicky, J. J., Pilloud, D. L., Wand, A. J., and Dutton, P. L. (1999) Biochemistry 38, 9495-9507
76. Fersht, A. (1999) Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding, W.H. Freeman and Company, NY