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Volumn 120, Issue 1-2, 2007, Pages 95-99

Use of multivariate statistics for 16S rRNA gene analysis of microbial communities

Author keywords

16S rRNA gene; Microbial community; Multivariate statistics

Indexed keywords

RNA 16S;

EID: 35748932694     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2007.06.004     Document Type: Article
Times cited : (33)

References (25)
  • 1
    • 24144447031 scopus 로고    scopus 로고
    • The contribution of species richness and composition to bacterial services
    • Bell T., Newman J.A., Silverman B.W., Turner S.L., and Lilley A.K. The contribution of species richness and composition to bacterial services. Nature 436 (2005) 1157-1160
    • (2005) Nature , vol.436 , pp. 1157-1160
    • Bell, T.1    Newman, J.A.2    Silverman, B.W.3    Turner, S.L.4    Lilley, A.K.5
  • 2
    • 10444286011 scopus 로고    scopus 로고
    • Analysis of genetic marker-phenotype relationships by jack-knifed partial least squares regression (PLSR)
    • Bjornstad A., Westad F., and Martens H. Analysis of genetic marker-phenotype relationships by jack-knifed partial least squares regression (PLSR). Hereditas 141 (2004) 149-165
    • (2004) Hereditas , vol.141 , pp. 149-165
    • Bjornstad, A.1    Westad, F.2    Martens, H.3
  • 3
    • 3242884053 scopus 로고    scopus 로고
    • Diversity and dynamics of communities of coagulase-negative staphylococci in traditional fermented sausages
    • Blaiotta G., Pennacchia C., Villani F., Ricciardi A., Tofalo R., and Parente E. Diversity and dynamics of communities of coagulase-negative staphylococci in traditional fermented sausages. J. Appl. Microbiol. 97 (2004) 271-284
    • (2004) J. Appl. Microbiol. , vol.97 , pp. 271-284
    • Blaiotta, G.1    Pennacchia, C.2    Villani, F.3    Ricciardi, A.4    Tofalo, R.5    Parente, E.6
  • 5
    • 2942566096 scopus 로고    scopus 로고
    • Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology
    • Curtis T.P., and Sloan W.T. Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology. Curr. Opin. Microbiol. 7 (2004) 221-226
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 221-226
    • Curtis, T.P.1    Sloan, W.T.2
  • 6
    • 1142297453 scopus 로고    scopus 로고
    • PCR-DGGE fingerprinting: novel strategies for detection of microbes in food
    • Ercolini D. PCR-DGGE fingerprinting: novel strategies for detection of microbes in food. J. Microbiol. Methods 56 (2004) 297-314
    • (2004) J. Microbiol. Methods , vol.56 , pp. 297-314
    • Ercolini, D.1
  • 7
    • 34247570668 scopus 로고    scopus 로고
    • Another ribosomal RNA sequence milestone- and a call for better annotation
    • Frank D.N., and Pace N.R. Another ribosomal RNA sequence milestone- and a call for better annotation. ASM News 71 (2005) 501-502
    • (2005) ASM News , vol.71 , pp. 501-502
    • Frank, D.N.1    Pace, N.R.2
  • 10
    • 0027998116 scopus 로고
    • Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
    • Ludwig W., and Schleifer K.H. Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol. Rev. 15 (1994) 155-173
    • (1994) FEMS Microbiol. Rev. , vol.15 , pp. 155-173
    • Ludwig, W.1    Schleifer, K.H.2
  • 12
    • 26044446676 scopus 로고    scopus 로고
    • A multivariate statistical approach to spatial representation of groundwater contamination using hydrochemistry and microbial community profiles
    • Mouser P.J., Rizzo D.M., Roling W.F., and Van Breukelen B.M. A multivariate statistical approach to spatial representation of groundwater contamination using hydrochemistry and microbial community profiles. Environ. Sci. Technol. 39 (2005) 7551-7559
    • (2005) Environ. Sci. Technol. , vol.39 , pp. 7551-7559
    • Mouser, P.J.1    Rizzo, D.M.2    Roling, W.F.3    Van Breukelen, B.M.4
  • 13
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73 (1998) 127-141
    • (1998) Antonie Van Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 14
    • 0242507740 scopus 로고    scopus 로고
    • Scaling up: the next challenge in environmental microbiology
    • Paerl H.W., and Steppe T.F. Scaling up: the next challenge in environmental microbiology. Environ. Microbiol. 5 (2003) 1025-1038
    • (2003) Environ. Microbiol. , vol.5 , pp. 1025-1038
    • Paerl, H.W.1    Steppe, T.F.2
  • 15
    • 4043138659 scopus 로고    scopus 로고
    • Technological and molecular diversity of Lactobacillus plantarum strains isolated from naturally fermented sourdoughs
    • Pepe O., Blaiotta G., Anastasio M., Moschetti G., Ercolini D., and Villani F. Technological and molecular diversity of Lactobacillus plantarum strains isolated from naturally fermented sourdoughs. Syst. Appl. Microbiol. 27 (2004) 443-453
    • (2004) Syst. Appl. Microbiol. , vol.27 , pp. 443-453
    • Pepe, O.1    Blaiotta, G.2    Anastasio, M.3    Moschetti, G.4    Ercolini, D.5    Villani, F.6
  • 16
    • 4143111862 scopus 로고    scopus 로고
    • Application of 16S rDNA arrays for analyses of microbial communities
    • Rudi K. Application of 16S rDNA arrays for analyses of microbial communities. Recent Res. Dev. Bacteriol. 1 (2003) 35-44
    • (2003) Recent Res. Dev. Bacteriol. , vol.1 , pp. 35-44
    • Rudi, K.1
  • 17
    • 0036193194 scopus 로고    scopus 로고
    • Development and evaluation of a 16S rDNA array approach for describing complex microbial communities in ready-to-eat vegetable salads packed in modified atmosphere
    • Rudi K., Flateland S.L., Hanssen J.F., Bengtsson G., and Nissen H. Development and evaluation of a 16S rDNA array approach for describing complex microbial communities in ready-to-eat vegetable salads packed in modified atmosphere. Appl. Environ. Microbiol. 68 (2002) 1146-1156
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1146-1156
    • Rudi, K.1    Flateland, S.L.2    Hanssen, J.F.3    Bengtsson, G.4    Nissen, H.5
  • 18
    • 4143060529 scopus 로고    scopus 로고
    • Explorative multivariate analyses of 16S rRNA gene data from microbial communities in modified-atmosphere-packed salmon and coalfish
    • Rudi K., Maugesten T., Hannevik S.E., and Nissen H. Explorative multivariate analyses of 16S rRNA gene data from microbial communities in modified-atmosphere-packed salmon and coalfish. Appl. Environ. Microbiol. 70 (2004) 5010-5018
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5010-5018
    • Rudi, K.1    Maugesten, T.2    Hannevik, S.E.3    Nissen, H.4
  • 19
    • 33746217518 scopus 로고    scopus 로고
    • Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny
    • Rudi K., Zimonja M., and Naes T. Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny. Int. J. Syst. Evol. Microbiol. 56 (2006) 1565-1575
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 1565-1575
    • Rudi, K.1    Zimonja, M.2    Naes, T.3
  • 21
    • 33746044471 scopus 로고    scopus 로고
    • Comparison of chicken gut colonisation by the pathogens Campylobacter jejuni and Clostridium perfringens by real-time quantitative PCR
    • Skanseng B., Kaldhusdal M., and Rudi K. Comparison of chicken gut colonisation by the pathogens Campylobacter jejuni and Clostridium perfringens by real-time quantitative PCR. Mol. Cell. Probes 20 (2006) 269-279
    • (2006) Mol. Cell. Probes , vol.20 , pp. 269-279
    • Skanseng, B.1    Kaldhusdal, M.2    Rudi, K.3
  • 22
    • 0034035471 scopus 로고    scopus 로고
    • Molecular techniques for determining microbial diversity and community structure in natural environments
    • Theron J., and Cloete T.E. Molecular techniques for determining microbial diversity and community structure in natural environments. Crit. Rev. Microbiol. 26 (2000) 37-57
    • (2000) Crit. Rev. Microbiol. , vol.26 , pp. 37-57
    • Theron, J.1    Cloete, T.E.2
  • 24
    • 4344626157 scopus 로고    scopus 로고
    • T-RFLP combined with principal component analysis and 16S rRNA gene sequencing: an effective strategy for comparison of fecal microbiota in infants of different ages
    • Wang M., Ahrne S., Antonsson M., and Molin G. T-RFLP combined with principal component analysis and 16S rRNA gene sequencing: an effective strategy for comparison of fecal microbiota in infants of different ages. J. Microbiol. Methods 59 (2004) 53-69
    • (2004) J. Microbiol. Methods , vol.59 , pp. 53-69
    • Wang, M.1    Ahrne, S.2    Antonsson, M.3    Molin, G.4
  • 25
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C.R. Bacterial evolution. Microbiol. Rev. 51 (1987) 221-271
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.