-
1
-
-
0037458086
-
Genome evolution: Recombination speeds up adaptive evolution
-
10.1016/S0960-9822(02)01432-X 12546809
-
Marais G Charlesworth B Genome evolution: Recombination speeds up adaptive evolution Curr Biol 2003, 13(2):R68-70. 10.1016/ S0960-9822(02)01432-X 12546809
-
(2003)
Curr Biol
, vol.13
, Issue.2
-
-
Marais, G.1
Charlesworth, B.2
-
2
-
-
0035826858
-
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes
-
33274 11320215 10.1073/pnas.091427698
-
Marais G Mouchiroud D Duret L Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes Proc Natl Acad Sci U S A 2001, 98(10):5688-5692. 33274 11320215 10.1073/ pnas.091427698
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.10
, pp. 5688-5692
-
-
Marais, G.1
Mouchiroud, D.2
Duret, L.3
-
3
-
-
33748195447
-
Evolutionary origin and maintenance of coexpressed gene clusters in mammals
-
10.1093/molbev/msl034 16757654
-
Semon M Duret L Evolutionary origin and maintenance of coexpressed gene clusters in mammals Mol Biol Evol 2006, 23(9):1715-1723. 10.1093/molbev/ msl034 16757654
-
(2006)
Mol Biol Evol
, vol.23
, Issue.9
, pp. 1715-1723
-
-
Semon, M.1
Duret, L.2
-
4
-
-
33746657720
-
Systematic analysis of head-to-head gene organization: Evolutionary conservation and potential biological relevance
-
1487180 16839196 10.1371/journal.pcbi.0020074
-
Li YY Yu H Guo ZM Guo TQ Tu K Li YX Systematic analysis of head-to-head gene organization: Evolutionary conservation and potential biological relevance PLoS Comput Biol 2006, 2(7):e74. 1487180 16839196 10.1371/ journal.pcbi.0020074
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.7
-
-
Li, Y.Y.1
Yu, H.2
Guo, Z.M.3
Guo, T.Q.4
Tu, K.5
Li, Y.X.6
-
5
-
-
1842427830
-
The evolutionary dynamics of eukaryotic gene order
-
10.1038/nrg1319 15131653
-
Hurst LD Pal C Lercher MJ The evolutionary dynamics of eukaryotic gene order Nat Rev Genet 2004, 5(4):299-310. 10.1038/nrg1319 15131653
-
(2004)
Nat Rev Genet
, vol.5
, Issue.4
, pp. 299-310
-
-
Hurst, L.D.1
Pal, C.2
Lercher, M.J.3
-
6
-
-
0036613754
-
Clustering of housekeeping genes provides a unified model of gene order in the human genome
-
10.1038/ng887 11992122
-
Lercher MJ Urrutia AO Hurst LD Clustering of housekeeping genes provides a unified model of gene order in the human genome Nat Genet 2002, 31(2):180-183. 10.1038/ng887 11992122
-
(2002)
Nat Genet
, vol.31
, pp. 180-183
-
-
Lercher, M.J.1
Urrutia, A.O.2
Hurst, L.D.3
-
7
-
-
0038104857
-
Genomic gene clustering analysis of pathways in eukaryotes
-
430880 12695325 10.1101/gr.737703
-
Lee JM Sonnhammer EL Genomic gene clustering analysis of pathways in eukaryotes Genome Res 2003, 13(5):875-882 430880 12695325 10.1101/ gr.737703
-
(2003)
Genome Res
, vol.13
, pp. 875-882
-
-
Lee, J.M.1
Sonnhammer, E.L.2
-
9
-
-
0036890388
-
Natural selection promotes the conservation of linkage of co-expressed genes
-
10.1016/S0168-9525(02)02813-5 12446137
-
Hurst LD Williams EJ Pal C Natural selection promotes the conservation of linkage of co-expressed genes Trends Genet 2002, 18(12):604-606. 10.1016/S0168-9525(02)02813-5 12446137
-
(2002)
Trends Genet
, vol.18
, Issue.12
, pp. 604-606
-
-
Hurst, L.D.1
Williams, E.J.2
Pal, C.3
-
10
-
-
1542719907
-
Origins of bidirectional promoters: Computational analyses of intergenic distance in the human genome
-
10.1093/molbev/msh040 14660682
-
Takai D Jones PA Origins of bidirectional promoters: Computational analyses of intergenic distance in the human genome Mol Biol Evol 2004, 21(3):463-467. 10.1093/molbev/msh040 14660682
-
(2004)
Mol Biol Evol
, vol.21
, Issue.3
, pp. 463-467
-
-
Takai, D.1
Jones, P.A.2
-
11
-
-
0347135948
-
An abundance of bidirectional promoters in the human genome
-
314279 14707170 10.1101/gr.1982804
-
Trinklein ND Aldred SF Hartman SJ Schroeder DI Otillar RP Myers RM An abundance of bidirectional promoters in the human genome Genome Res 2004, 14(1):62-66. 314279 14707170 10.1101/gr.1982804
-
(2004)
Genome Res
, vol.14
, Issue.1
, pp. 62-66
-
-
Trinklein, N.D.1
Aldred, S.F.2
Hartman, S.J.3
Schroeder, D.I.4
Otillar, R.P.5
Myers, R.M.6
-
12
-
-
0034161444
-
Regulation of adjacent yeast genes
-
10.1016/S0168-9525(99)01941-1 10689350
-
Kruglyak S Tang H Regulation of adjacent yeast genes Trends Genet 2000, 16(3):109-111. 10.1016/S0168-9525(99)01941-1 10689350
-
(2000)
Trends Genet
, vol.16
, Issue.3
, pp. 109-111
-
-
Kruglyak, S.1
Tang, H.2
-
13
-
-
13244249624
-
Modelling the correlation between the activities of adjacent genes in Drosophila
-
547897 15659243 10.1186/1471-2105-6-10
-
Thygesen HH Zwinderman AH Modelling the correlation between the activities of adjacent genes in Drosophila BMC Bioinformatics 2005, 6:10. 547897 15659243 10.1186/1471-2105-6-10
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 10
-
-
Thygesen, H.H.1
Zwinderman, A.H.2
-
14
-
-
0037142086
-
A global analysis of Caenorhabditis elegans operons
-
10.1038/nature00831 12075352
-
Blumenthal T Evans D Link CD Guffanti A Lawson D Thierry-Mieg J Thierry-Mieg D Chiu WL Duke K Kiraly M Kim SK A global analysis of Caenorhabditis elegans operons Nature 2002, 417(6891):851-854. 10.1038/ nature00831 12075352
-
(2002)
Nature
, vol.417
, Issue.6861
, pp. 851-854
-
-
Blumenthal, T.1
Evans, D.2
Link, C.D.3
Guffanti, A.4
Lawson, D.5
Thierry-Mieg, J.6
Thierry-Mieg, D.7
Chiu, W.L.8
Duke, K.9
Kiraly, M.10
Kim, S.K.11
-
15
-
-
1842486262
-
Inter-species differences of co-expression of neighboring genes in eukaryotic genomes
-
331401 14718066 10.1186/1471-2164-5-4
-
Fukuoka Y Inaoka H Kohane IS Inter-species differences of co-expression of neighboring genes in eukaryotic genomes BMC Genomics 2004, 5(1):4. 331401 14718066 10.1186/1471-2164-5-4
-
(2004)
BMC Genomics
, vol.5
, Issue.1
, pp. 4
-
-
Fukuoka, Y.1
Inaoka, H.2
Kohane, I.S.3
-
16
-
-
0003328368
-
Evidence for large domains of similarly expressed genes in the Drosophila genome
-
117248 12144710 10.1186/1475-4924-1-5
-
Spellman PT Rubin GM Evidence for large domains of similarly expressed genes in the Drosophila genome J Biol 2004, 5(1):4. 117248 12144710 10.1186/1475-4924-1-5
-
(2002)
J Biol
, vol.5
, Issue.1
, pp. 4
-
-
Spellman, P.T.1
Rubin, G.M.2
-
17
-
-
25844496592
-
The role of chromatin structure in regulating the expression of clustered genes
-
10.1038/nrg1688 16160692
-
Sproul D Gilbert N Bickmore WA The role of chromatin structure in regulating the expression of clustered genes Nat Rev Genet 2005, 6(10):775-781. 10.1038/nrg1688 16160692
-
(2005)
Nat Rev Genet
, vol.6
, Issue.10
, pp. 775-781
-
-
Sproul, D.1
Gilbert, N.2
Bickmore, W.A.3
-
18
-
-
0042329754
-
Structure, function and evolution of CpG island promoters
-
10.1007/s00018-003-3088-6 14504655
-
Antequera F Structure, function and evolution of CpG island promoters Cell Mol Life Sci 2003, 60(8):1647-1658. 10.1007/s00018-003-3088-6 14504655
-
(2003)
Cell Mol Life Sci
, vol.60
, Issue.8
, pp. 1647-1658
-
-
Antequera, F.1
-
19
-
-
0037188910
-
Bidirectional gene organization: A common architectural feature of the human genome
-
10.1016/S0092-8674(02)00758-4 12110178
-
Adachi N Lieber MR Bidirectional gene organization: A common architectural feature of the human genome Cell 2002, 109(7):807-809. 10.1016/S0092-8674(02)00758-4 12110178
-
(2002)
Cell
, vol.109
, Issue.7
, pp. 807-809
-
-
Adachi, N.1
Lieber, M.R.2
-
20
-
-
0033780450
-
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
-
10.1038/79896 11017073
-
Cohen BA Mitra RD Hughes JD Church GM A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression Nat Genet 2000, 26(2):183-186. 10.1038/79896 11017073
-
(2000)
Nat Genet
, vol.26
, Issue.2
, pp. 183-186
-
-
Cohen, B.A.1
Mitra, R.D.2
Hughes, J.D.3
Church, G.M.4
-
21
-
-
33646872835
-
Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion
-
10.1093/molbev/msj121 16527865
-
Byrnes JK Morris GP Li WH Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion Mol Biol Evol 2006, 23(6):1136-1143. 10.1093/molbev/msj121 16527865
-
(2006)
Mol Biol Evol
, vol.23
, Issue.6
, pp. 1136-1143
-
-
Byrnes, J.K.1
Morris, G.P.2
Li, W.H.3
-
22
-
-
21744443068
-
Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system
-
10.1016/j.gene.2005.04.027 15944140
-
Koyanagi KO Hagiwara M Itoh T Gojobori T Imanishi T Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system Gene 2005, 353(2):169-176. 10.1016/ j.gene.2005.04.027 15944140
-
(2005)
Gene
, vol.353
, Issue.2
, pp. 169-176
-
-
Koyanagi, K.O.1
Hagiwara, M.2
Itoh, T.3
Gojobori, T.4
Imanishi, T.5
-
23
-
-
1942453302
-
Predicting gene expression from sequence
-
10.1016/S0092-8674(04)00304-6 15084257
-
Beer MA Tavazoie S Predicting gene expression from sequence Cell 2004, 117(2):185-198. 10.1016/S0092-8674(04)00304-6 15084257
-
(2004)
Cell
, vol.117
, Issue.2
, pp. 185-198
-
-
Beer, M.A.1
Tavazoie, S.2
-
25
-
-
33749870103
-
A large quantity of novel human antisense transcripts detected by LongSAGE
-
10.1093/bioinformatics/btl429 16895931
-
Ge X Wu Q Jung YC Chen J Wang SM A large quantity of novel human antisense transcripts detected by LongSAGE Bioinformatics 2006, 22(20):2475-2479. 10.1093/bioinformatics/btl429 16895931
-
(2006)
Bioinformatics
, vol.22
, Issue.20
, pp. 2475-2479
-
-
Ge, X.1
Wu, Q.2
Jung, Y.C.3
Chen, J.4
Wang, S.M.5
-
26
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
1414796 16569694 10.1073/pnas.0601091103
-
David L Huber W Granovskaia M Toedling J Palm CJ Bofkin L Jones T Davis RW Steinmetz LM A high-resolution map of transcription in the yeast genome Proc Natl Acad Sci U S A 2006, 103(14):5320-5325. 1414796 16569694 10.1073/pnas.0601091103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.14
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
Palm, C.J.5
Bofkin, L.6
Jones, T.7
Davis, R.W.8
Steinmetz, L.M.9
-
27
-
-
33845223334
-
A large-scale full-length cDNA analysis to explore the budding yeast transcriptome
-
1693835 17101987 10.1073/pnas.0605645103
-
Miura F Kawaguchi N Sese J Toyoda A Hattori M Morishita S Ito T A large-scale full-length cDNA analysis to explore the budding yeast transcriptome Proc Natl Acad Sci U S A 2006, 103(47):17846-17851. 1693835 17101987 10.1073/pnas.0605645103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.47
, pp. 17846-17851
-
-
Miura, F.1
Kawaguchi, N.2
Sese, J.3
Toyoda, A.4
Hattori, M.5
Morishita, S.6
Ito, T.7
-
28
-
-
14844360104
-
Regulated chromatin domain comprising cluster of co-expressed genes in Drosophila melanogaster
-
1062873 15755746 10.1093/nar/gki281
-
Kalmykova AI Nurminsky DI Ryzhov DV Shevelyov YY Regulated chromatin domain comprising cluster of co-expressed genes in Drosophila melanogaster Nucleic Acids Res 2005, 33(5):1435-1444. 1062873 15755746 10.1093/nar/gki281
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.5
, pp. 1435-1444
-
-
Kalmykova, A.I.1
Nurminsky, D.I.2
Ryzhov, D.V.3
Shevelyov, Y.Y.4
-
29
-
-
33645963743
-
Histone post-translational modifications regulate transcription and silent chromatin in Saccharomyces cerevisiae
-
16568953
-
Emre NC Berger SL Histone post-translational modifications regulate transcription and silent chromatin in Saccharomyces cerevisiae Ernst Schering Res Found Workshop 2006:127-153. 16568953
-
(2006)
Ernst Schering Res Found Workshop
, pp. 127-153
-
-
Emre, N.C.1
Berger, S.L.2
-
30
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
25624 9843569
-
Spellman PT Sherlock G Zhang MQ Iyer VR Anders K Eisen MB Brown PO Botstein D Futcher B Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization Mol Biol Cell 1998, 9(12):3273-3297. 25624 9843569
-
(1998)
Mol Biol Cell
, vol.9
, Issue.12
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
31
-
-
0037163129
-
Genome-wide analysis of gene expression regulated by the calcineurin/ Crz1p signaling pathway in Saccharomyces cerevisiae
-
10.1074/jbc.M202718200 12058033
-
Yoshimoto H Saltsman K Gasch AP Li HX Ogawa N Botstein D Brown PO Cyert MS Genome-wide analysis of gene expression regulated by the calcineurin/ Crz1p signaling pathway in Saccharomyces cerevisiae J Biol Chem 277(34):31079-31088. 10.1074/jbc.M202718200 12058033
-
(2002)
J Biol Chem
, vol.277
, Issue.34
, pp. 31079-31088
-
-
Yoshimoto, H.1
Saltsman, K.2
Gasch, A.P.3
Li, H.X.4
Ogawa, N.5
Botstein, D.6
Brown, P.O.7
Cyert, M.S.8
-
32
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
15070 11102521
-
Gasch AP Spellman PT Kao CM Carmel-Harel O Eisen MB Storz G Botstein D Brown PO Genomic expression programs in the response of yeast cells to environmental changes Mol Biol Cell 2000, 11(12):4241-4257. 15070 11102521
-
(2000)
Mol Biol Cell
, vol.11
, Issue.12
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
|