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Volumn 22, Issue 20, 2006, Pages 2475-2479

A large quantity of novel human antisense transcripts detected by LongSAGE

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY RNA; MESSENGER RNA;

EID: 33749870103     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl429     Document Type: Article
Times cited : (47)

References (26)
  • 1
    • 3042641339 scopus 로고    scopus 로고
    • Correction of sequence-based artifacts in serial analysis of gene expression
    • Akmaev,V.R. and Wang,C.J. (2004) Correction of sequence-based artifacts in serial analysis of gene expression. Bioinformatics, 20, 1254-1263.
    • (2004) Bioinformatics , vol.20 , pp. 1254-1263
    • Akmaev, V.R.1    Wang, C.J.2
  • 2
    • 0016345602 scopus 로고
    • Three abundance classes in HeLa cell messenger RNA
    • Bishop,J.O. et al. (1974) Three abundance classes in HeLa cell messenger RNA. Nature, 250, 199-204.
    • (1974) Nature , vol.250 , pp. 199-204
    • Bishop, J.O.1
  • 3
    • 0037126025 scopus 로고    scopus 로고
    • Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags
    • Chen,J. et al. (2002) Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags. Proc. Natl Acad. Sci. USA, 99, 12257-12262.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12257-12262
    • Chen, J.1
  • 4
    • 4444376317 scopus 로고    scopus 로고
    • Over 20% of human transcripts might form sense-antisense pairs
    • Chen,J. et al. (2004) Over 20% of human transcripts might form sense-antisense pairs. Nucleic Acids Res., 32, 4812-4820.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4812-4820
    • Chen, J.1
  • 5
    • 0036307006 scopus 로고    scopus 로고
    • Overlapping antisense in the human genome
    • Fahey,M.E. et al. (2002) Overlapping antisense in the human genome. Comput. Funct. Genomics, 3, 244-253.
    • (2002) Comput. Funct. Genomics , vol.3 , pp. 244-253
    • Fahey, M.E.1
  • 6
    • 31144469134 scopus 로고    scopus 로고
    • Structural variation in the human genome
    • Feuk,L. et al. (2006) Structural variation in the human genome. Nat. Rev. Genet., 7, 85-97.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 85-97
    • Feuk, L.1
  • 7
    • 0037177855 scopus 로고    scopus 로고
    • Transcript abundance in yeast varies over six orders of magnitude
    • Holland,M.J. (2002) Transcript abundance in yeast varies over six orders of magnitude. J. Biol. Chem., 277, 14363-14366.
    • (2002) J. Biol. Chem. , vol.277 , pp. 14363-14366
    • Holland, M.J.1
  • 8
    • 24644472515 scopus 로고    scopus 로고
    • Antisense transcriptn in mammalian transcriptome
    • Katayama,S. et al. (2005) Antisense transcriptn in mammalian transcriptome. Science, 309, 1564-1566.
    • (2005) Science , vol.309 , pp. 1564-1566
    • Katayama, S.1
  • 9
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent,J. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, J.1
  • 10
    • 0033231026 scopus 로고    scopus 로고
    • A public database for gene expression in human cancers
    • Lal,A. et al. (1999) A public database for gene expression in human cancers. Cancer Res., 59, 5403-5407.
    • (1999) Cancer Res. , vol.59 , pp. 5403-5407
    • Lal, A.1
  • 11
    • 0036468258 scopus 로고    scopus 로고
    • Antisense transcripts in the human genome
    • Lehner,B. et al. (2002) Antisense transcripts in the human genome. Trends. Genet., 18, 63-65.
    • (2002) Trends. Genet. , vol.18 , pp. 63-65
    • Lehner, B.1
  • 12
    • 0032932528 scopus 로고    scopus 로고
    • Tsix, a gene antisense to Xist at the X-inactivation centre
    • Lee,J.T. et al. (1999) Tsix, a gene antisense to Xist at the X-inactivation centre. Nat. Genet., 21, 400-404.
    • (1999) Nat. Genet. , vol.21 , pp. 400-404
    • Lee, J.T.1
  • 13
    • 21844454212 scopus 로고    scopus 로고
    • Detecting novel low-abundant transcripts in Drosophila
    • Lee,S. et al. (2005) Detecting novel low-abundant transcripts in Drosophila. RNA, 11, 939-946.
    • (2005) RNA , vol.11 , pp. 939-946
    • Lee, S.1
  • 14
    • 3142615372 scopus 로고    scopus 로고
    • The RNAi revolution
    • Novina,C.D. and Sharp,P.A. (2004) The RNAi revolution. Nature, 430, 161-164.
    • (2004) Nature , vol.430 , pp. 161-164
    • Novina, C.D.1    Sharp, P.A.2
  • 15
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt,K.D. et al. (2005) NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 33, D501-D504.
    • (2005) Nucleic Acids Res. , vol.33
    • Pruitt, K.D.1
  • 16
    • 16544380151 scopus 로고    scopus 로고
    • Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression
    • Quere,R. et al. (2004) Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression. Nucleic Acids Res., 32, e163.
    • (2004) Nucleic Acids Res. , vol.32
    • Quere, R.1
  • 17
    • 24644472515 scopus 로고    scopus 로고
    • Antisense transcription in the mammalian transcriptome
    • Riken Genome Exploration Research Group and Genome Science Group and the FANTOM Consortium
    • Riken Genome Exploration Research Group and Genome Science Group and the FANTOM Consortium. (2005) Antisense transcription in the mammalian transcriptome. Science, 309, 1564-1556.
    • (2005) Science , vol.309 , pp. 1556-1564
  • 18
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the www for general users and for biologist programmers
    • Rozen,S. and Skaletsky,H. (2000) Primer3 on the www for general users and for biologist programmers. Methods Mol. Biol., 132, 365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 19
    • 0036246030 scopus 로고    scopus 로고
    • Using the transcriptome to annotate the genome
    • Saha,S. et al. (2002) Using the transcriptome to annotate the genome. Nat. Biotechnol., 20, 508-512.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 508-512
    • Saha, S.1
  • 20
    • 0037158780 scopus 로고    scopus 로고
    • Computational discovery of sense-antisense transcription in the human and mouse genomes
    • RESEARCH0044
    • Shendure,J. and Church,G.M. (2002) Computational discovery of sense-antisense transcription in the human and mouse genomes. Genome Biol., 3, RESEARCH0044.
    • (2002) Genome Biol. , vol.3
    • Shendure, J.1    Church, G.M.2
  • 21
    • 29444455072 scopus 로고    scopus 로고
    • A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells
    • Siddiqui,A.S. et al. (2005) A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells. Proc. Natl. Acad. Sci. USA, 102, 18485-18490.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 18485-18490
    • Siddiqui, A.S.1
  • 22
    • 0024253944 scopus 로고
    • Biological regulation by antisense RNA in prokaryotes
    • Simons,R.W. and Kleckner,N. (1988) Biological regulation by antisense RNA in prokaryotes. Annu. Rev. Genet., 22, 567-600.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 567-600
    • Simons, R.W.1    Kleckner, N.2
  • 23
    • 0028789793 scopus 로고
    • Serial analysis of gene expression
    • Velculescu,V.E. et al. (1995) Serial analysis of gene expression. Science, 270, 484-487.
    • (1995) Science , vol.270 , pp. 484-487
    • Velculescu, V.E.1
  • 24
    • 17444377577 scopus 로고    scopus 로고
    • LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome
    • Wahl,M.B. et al. (2005) LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome. Bioinformatics, 21, 1389-1392.
    • (2005) Bioinformatics , vol.21 , pp. 1389-1392
    • Wahl, M.B.1
  • 25
    • 0028006563 scopus 로고
    • Localization of a breast cancer susceptibility gene, BRCA2, to chromosome 13q12-13
    • Wooster,R. et al. (1994) Localization of a breast cancer susceptibility gene, BRCA2, to chromosome 13q12-13. Science, 265, 2088-2090.
    • (1994) Science , vol.265 , pp. 2088-2090
    • Wooster, R.1
  • 26
    • 12244275645 scopus 로고    scopus 로고
    • Widespread occurrence of antisense transcription in the human genome
    • Yelin,R. et al. (2003) Widespread occurrence of antisense transcription in the human genome. Nat. Biotechnol., 21, 379-386.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 379-386
    • Yelin, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.