Isolation of DNA topoisomerase II gene from Pleurotus ostreatus and its application in phylogenetic analysis

Journal of Applied Microbiology

Volumn 103, Issue 5, 2007, Pages 2026-2032

  Li, C X ^a,b,c   Zhang, J X ^b   Huang, C Y ^b   Chen, Q ^b   Wang, H X ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

^c SOUTHWEST FORESTRY UNIVERSITY   (China)

Author keywords

DNA topoisomerase II; Molecular marker; Phylogeny; Pleurotus ostreatus; Taxonomy

Indexed keywords

CLONING; GENES; POLYMERASE CHAIN REACTION;

CDNA CLONES; DNA TOPOISOMERASE; DNA TOPOISOMERASE II; GENE SEQUENCES; ITS APPLICATIONS; MOLECULAR MARKER; PHYLOGENY; PLEUROTUS; PLEUROTUS OSTREATUS; TOPOISOMERASE II;

DNA;

DNA TOPOISOMERASE (ATP HYDROLYSING);

DNA; EXPERIMENTAL STUDY; MOLECULAR ANALYSIS; MORPHOLOGY; MUSHROOM; PHYLOGENETICS; POLYMERASE CHAIN REACTION;

ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; DNA ISOLATION; GENE AMPLIFICATION; GENE INSERTION SEQUENCE; GENE ISOLATION; GENE SEGREGATION; GENE SEQUENCE; MOLECULAR CLONING; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLEUROTUS OSTREATUS; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; TAXONOMY;

EUKARYOTA; PLEUROTUS; PLEUROTUS OSTREATUS;

EID: 35448936910     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2007.03446.x     Document Type: Article

References (38)

1. Bao, D.P., Ishihara, H., Mori, N. Kitamoto, Y. (2004) Phylogenetic analysis of oyster mushrooms (Pleurotus spp.) based on restriction fragment length polymorphisms of the 5′ portion of 26S rDNA. J Wood Sci 50, 169 176.
2. Bergerat, A., de Massy, B., Gadelle, D., Varoutas, P.C., Nicolas, A. Forterre, P. (1997) An atypical topoisomerase II from archaea with implications for meiotic recombination. Nature 386, 414 417.
3. Champoux, J.J. (2001) DNA topoisomerases: structure, function, and mechanism. Annu Rev Biochem 70, 369 413.
4. Gadelle, D., Filee, J., Buhler, C. Forterre, P. (2003) Phylogenomics of type II DNA topoisomerases. Bioessays 25, 232 242.
5. Giménez-Abián, J.F., Clarke, D.J., Mullinger, A.M., Downes, C.S. Johnson, R.T. (1995) A postprophase topoisomerase II-dependent chromatid core separation step in the formation of metaphase chromosomes. J Cell Biol 131, 7 17.
6. Gonzalez, P. Labarère, J. (2000) Phylogentic relationships of Pleurotus species according to the sequence and secondary structure of the mitochondrial small-subunit rRNA V4, V6 and V9 domains. Microbiology 146, 209 221.
7. He, D., Dong, J.H., Wen, J.F., Xin, D.D. Lu, S.Q. (2005a) Phylogenetic positions of several amitochondriate protozoa - evidence from phylogenetic analysis of DNA topoisomerase II. Sci China Ser C 48, 565 573.
8. He, D., Wen, J.F., Chen, W.Q., Lu, S.Q. Xin, D.D. (2005b) Identification, characteristic and phylogenetic analysis of type II DNA topoisomerase gene in Giardia lamblia. Cell Res 15, 474 482.
9. Ishida, R., Hamatake, M., Wasserman, R.A., Nitiss, J.L., Wang, J.C. Andoh, T. (1995) DNA topoisomerase II is the molecular target of bisdioxopiperazine derivatives ICRF-159 and ICRF-193 in Saccharomyces cerevisiae. Cancer Res 55, 2299 2303.
10. Iwabata, K., Koshiyama, A., Yamaguchi, T., Sugawara, H., Hamada, F.N., Namekawa, S.H., IshII, S., Ishizaki, T. et al. (2005) DNA topoisomerase II interacts with Lim15/Dmc1 in meiosis. Nucleic Acids Res 33, 5809 5818.
11. p24. Nucleic Acids Res 20, 5587 5592.
12. Jones, D.T., Taylor, W.R. Thornton, J.M. (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8, 275 282.
13. Kanbe, T., Yamaki, K. Kikuchi, A. (2002) Identification of the pathogenic Aspergillus species by nested PCR using a mixture of specific primers to DNA topoisomerase II gene. Microbiol Immunol 46, 841 848.
14. Kato, M., Ozeki, M., Kikuchi, A. Kanbe, T. (2001) Phylogenetic relationship and mode of evolution of yeast DNA topoisomerase II gene in the pathogenic Candida species. Gene 272, 275 281.
15. Keller, B.A., Patel, S. Fisher, L.M. (1997) Molecular cloning and expression of the Candida albicans TOP2 gene allows study of fungal DNA topoisomerase II inhibitors in yeast. Biochem J 324, 329 339.
16. Kim, K.-H., Akashi, T., Mizuguchi, I. Kikuchi, A. (1999) Cloning and characterization of the gene encoding Aspergillus nidulans DNA topoisomerase II. Gene 236, 293 301.
17. Kim, K.-H., Kanbe, T., Akashi, T., Mizuguchi, I. Kikuchi, A. (2002) Identification of a single nuclear localization signal in the C-terminal domain of an Aspergillus DNA topoisomerase II. Mol Genet Genomics 268, 287 297.
18. Kirk, P.M., Cannon, P.F., David, J.C. Stalpers, J.A. (2001) Dictionary of the Fungi, 9th edn. UK : CABI Publishing.
19. Lam, E. Chua, N.H. (1987) Chloroplast DNA gyrase and in vitro regulation of transcription by template topology and novobiocin. Plant Mol Biol 8, 415 424.
20. Li, X.L. Yao, Y.J. (2004) Assembling phylogenetic tree of Pleurotus based on 28S rDNA sequencing. Mycosystema 23, 345 350.
21. Liu, Y.J. Hall, B.D. (2004) Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny. Proc Natl Acad Sci USA 101, 4507 4512.
22. Liu, Y.J., Whelen, S. Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Mol Biol Evol 16, 1799 1808.
23. Loftus, B.J., Fung, E., Roncaglia, P., Rowley, D., Amedeo, P., Bruno, D., Vamathevan, J., Miranda, M. et al. (2005) The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Science 307, 1321 1324.
24. Ma, F.Y., Luo, J. Luo, X.C. (2004) Phylogenetic relationships of Pleurotus species based on rDNA PCR-RFLP. J Hua Zhong Agric Univ 23, 135 140.
25. Meng, Y., Jiang, C.S., Liao, W.T. Zhang, Y.Z. (2003) AFLP fingerprinting map analysis of Pleurotus ostreatus. Acta Genetica Sinica 30, 1140 1146.
26. Nitiss, J.L. (1998) Investigating the biological functions of DNA topoisomerases in eukaryotic cells. Biochim Biophys Acta 1400, 63 81.
27. Nolan, J.M., Lee, M.P., Wyckoff, E. Hsieh, T.S. (1986) Isolation and characterization of the gene encoding Drosophila DNA topoisomerase II. Proc Natl Acad Sci USA 83, 3664 3668.
28. Pegler, D.N. Yao, Y.J. (1995) The distinction between Lentinus sajor-caju and Pleurotus ostreatus and their taxonomy. Acta Botanica Yunnanica 17, 305 311.
29. Reddy, M.K., Nair, S., Tewari, K.K., Mudgil, Y., Yadav, B.S. Sopory, S.K. (1999) Cloning and characterization of a cDNA encoding topoisomerase II in pea and analysis of its expression in relation to cell proliferation. Plant Mol Biol 41, 125 137.
30. Riou, J.F., Gabillot, M., Philippe, M., Schrevel, J. Riou, G. (1986) Purification and characterization of Plasmodium berghei DNA topoisomerases I and II: drug action, inhibition of decatenation and relaxation and stimulation of DNA cleavage. Biochemistry 25, 1471 1479.
31. Singh, B.N., Mudgil, Y., Sopory, S.K. Reddy, M.K. (2003) Molecular characterization of a nuclear topoisomerase II from Nicotiana tabacum that functionally complements a temperature-sensitive topoisomerase II yeast mutant. Plant Mol Biol 52, 1063 1076.
32. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. Higgins, D.G. (1997) The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24, 4876 4882.
33. Wang, J.C. (1996) DNA topoisomerases. Annu Rev Biochem 65, 635 692.
34. Watt, P.M. Hickson, I.D. (1994) Structure and function of type II DNA topoisomerases. Biochem J 303, 681 695.
35. Xie, S.P. Lam, E. (1994a) Abundance of nuclear DNA topoisomerase II is correlated with proliferation in Arabidopsis thaliana. Nucleic Acids Res 22, 5729 5736.
36. Xie, S.P. Lam, E. (1994b) Characterization of a DNA topoisomerase II cDNA from Arabidopsis thaliana. Plant Physiol 106, 1701 1702.
37. Zeng, D.F. (1999) The status quo of studies on species diversity of the genus Pleurotus. Acta Edulis Fungi 6, 60 64.
38. Zhang, J.X., Huang, C.Y., Zhang, R.Y. Guan, G.P. (2004) RAPD and IGS analysis of Pleurotus nebrodensis cultivars in China. Mycosystema 23, 514 519.