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Volumn 5, Issue 2, 2004, Pages 145-156

Classification of gene expression profile using combinatory method of evolutionary computation and machine learning

Author keywords

Artificial immune system; Cancer diagnosis; Evolutionary computation; Gene expression classification; Wrapper approach

Indexed keywords

DATA ACQUISITION; DIAGNOSIS; GENE TRANSFER; GENES; LEARNING SYSTEMS; MICROPROCESSOR CHIPS; MOLECULAR BIOLOGY; SELF ORGANIZING MAPS; TUMORS;

EID: 3543106611     PISSN: 13892576     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:GENP.0000023685.83861.69     Document Type: Conference Paper
Times cited : (15)

References (44)
  • 2
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • U. Alon, N. Barkai, D. A. Notterman, K. Gish, S. Ybarra, and D. Mack, "Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays," Proc. Natl. Acad. Sci. USA vol. 96, no. 12, pp. 6745-6750, 1999.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , Issue.12 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6
  • 4
    • 0000751098 scopus 로고    scopus 로고
    • Using learning to facilitate the evolution of features for recognizing visual concepts
    • J. De Jong, K. Huang, J. Vafaie, H. Wechsler, and H. Bala, "Using learning to facilitate the evolution of features for recognizing visual concepts," Evolutionary Computation vol. 4, no. 3, pp. 297-311, 1996.
    • (1996) Evolutionary Computation , vol.4 , Issue.3 , pp. 297-311
    • De Jong, J.1    Huang, K.2    Vafaie, J.3    Wechsler, H.4    Bala, H.5
  • 7
    • 0000667930 scopus 로고    scopus 로고
    • Training nu-support vector classifiers: Theory and algorithms
    • C. Chang and C. Lin, "Training nu-support vector classifiers: Theory and algorithms," Neural Computation vol. 13, no. 9, pp. 2119-2147, 2001.
    • (2001) Neural Computation , vol.13 , Issue.9 , pp. 2119-2147
    • Chang, C.1    Lin, C.2
  • 8
    • 0036161011 scopus 로고    scopus 로고
    • Choosing multiple parameters for support vector machines
    • O. Chapelle, V. Vapnik, O. Bousquet, and S. Mukherjee, "Choosing multiple parameters for support vector machines," Machine Learning vol. 46, nos. 1-3, pp. 131-159, 2002.
    • (2002) Machine Learning , vol.46 , Issue.1-3 , pp. 131-159
    • Chapelle, O.1    Vapnik, V.2    Bousquet, O.3    Mukherjee, S.4
  • 11
    • 0037342510 scopus 로고    scopus 로고
    • Comparison and validation of statistical clustering techniques for microarray gene expression data
    • S. Datta and S. Datta, "Comparison and validation of statistical clustering techniques for microarray gene expression data," Bioin-formatics vol. 19, no. 4, pp. 459-466, 2003.
    • (2003) Bioin-formatics , vol.19 , Issue.4 , pp. 459-466
    • Datta, S.1
  • 12
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic genetic control of gene expression on a genomic scale
    • J. DeRisi, V. Iyer, and P. Brown, "Exploring the metabolic genetic control of gene expression on a genomic scale," Science vol. 278, pp. 680-686, 1997.
    • (1997) Science , vol.278 , pp. 680-686
    • Derisi, J.1    Iyer, V.2    Brown, P.3
  • 13
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • M. B. Eisen, P. T. Spellman, P. O. Brown, and D. Botstein, "Cluster analysis and display of genome-wide expression patterns," Proc. Natl. Acad. Sci. USA vol. 95, no. 25, pp. 14863-14868, 1998.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 14
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • A. J. Enright, I. Iliopoulos, N. C. Kyrpides, and C. A. Ouzounis, "Protein interaction maps for complete genomes based on gene fusion events," Nature vol. 402, pp. 86-90, 1999.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 15
    • 0030822569 scopus 로고    scopus 로고
    • Massively parallel genomics
    • S. A. Fodor, "Massively parallel genomics," Science vol. 277, pp. 393-395, 1997.
    • (1997) Science , vol.277 , pp. 393-395
    • Fodor, S.A.1
  • 17
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • I. Guyon, J. Weston, S. Barnhill, and V. Vapnik, "Gene selection for cancer classification using support vector machines," Machine Learning vol. 46, nos. 1-3, pp. 389-422, 2002.
    • (2002) Machine Learning , vol.46 , Issue.1-3 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 19
    • 17744402661 scopus 로고    scopus 로고
    • Feature subset selection by bayesian networks based on optimization
    • I. Inza, R. Larranaga, P. Etxeberria, and B. Sierra, "Feature subset selection by bayesian networks based on optimization," Artificial Intelligence vol. 123, nos. 1/2, pp. 157-184, 1999.
    • (1999) Artificial Intelligence , vol.123 , Issue.1-2 , pp. 157-184
    • Inza, I.1    Larranaga, R.2    Etxeberria, P.3    Sierra, B.4
  • 20
    • 0034806755 scopus 로고    scopus 로고
    • Feature subset selection by genetic algorithms and estimation of distribution algorithms - A case study in the survival of cirrhotic patients treated with TIPS
    • Inaki Inza, Marisa Merino, Pedro Larranaga, Jorge Quiroga, Basilio Sierra, and Marcos Girala, "Feature subset selection by genetic algorithms and estimation of distribution algorithms - A case study in the survival of cirrhotic patients treated with TIPS," Artificial Intelligence in Medicine vol. 23, no. 2, pp. 187-205, 2001.
    • (2001) Artificial Intelligence in Medicine , vol.23 , Issue.2 , pp. 187-205
    • Inza, I.1    Merino, M.2    Larranaga, P.3    Quiroga, J.4    Sierra, B.5    Girala, M.6
  • 21
    • 27644534400 scopus 로고    scopus 로고
    • Genetic algorithms for gene expression analysis
    • Günther Raidi et al. (eds.), Essex, UK, April, 14-16, 2003, LNCS, Springer
    • Ed Keedwell and Ajit Narayanan, "Genetic algorithms for gene expression analysis," in Applications of Evolutionary Computing - Proceedings of the Evo Workshops 2003, Günther Raidi et al. (eds.), Essex, UK, April, 14-16, 2003, LNCS, Springer, pp. 76-86, 2003.
    • (2003) Applications of Evolutionary Computing - Proceedings of the Evo Workshops 2003 , pp. 76-86
    • Keedwell, E.1    Narayanan, A.2
  • 23
    • 0033640901 scopus 로고    scopus 로고
    • Comparison of algorithms that select features for pattern classifiers
    • M. Kudo and Sklansky K, "Comparison of algorithms that select features for pattern classifiers," Pattern Recognition vol. 33, no. 1, pp. 25-41, 2000.
    • (2000) Pattern Recognition , vol.33 , Issue.1 , pp. 25-41
    • Kudo, M.1    Sklansky, K.2
  • 24
    • 0037245821 scopus 로고    scopus 로고
    • Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (all) patients
    • J. Li, H. Liu, J. R. Downing, A. E. Yeoh, and L. Wong, "Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (all) patients," Bioinformatics vol. 19, no. 1, pp. 71-78, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 71-78
    • Li, J.1    Liu, H.2    Downing, J.R.3    Yeoh, A.E.4    Wong, L.5
  • 25
    • 0036139278 scopus 로고    scopus 로고
    • Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the ga/knn method
    • L Li, C. R. Weinberg, T. A. Darden, and L. G. Pedersen, "Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the ga/knn method," Bioinformatics vol. 17, no. 12, pp. 1131-1142, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1131-1142
    • Li, L.1    Weinberg, C.R.2    Darden, T.A.3    Pedersen, L.G.4
  • 27
    • 0035748446 scopus 로고    scopus 로고
    • Selecting informative genes with parallel genetic algorithms in tissue classification
    • G. Iba Liu J, "Selecting informative genes with parallel genetic algorithms in tissue classification," in Genome Informatics 12, 2001, pp. 14-23.
    • (2001) Genome Informatics , vol.12 , pp. 14-23
    • Iba, G.1    Liu, J.2
  • 29
  • 31
    • 0037297064 scopus 로고    scopus 로고
    • Megakaryoblastic leukemia cell line molm-16 derived from minimally differentiated acute leukemia with myeloid/nk precursor phenotype
    • Y. Matsuo, H. G. Drexler, K. Kaneda, K. Kojima, Y. Ohtsuki, M. Hara, M. Yasukawa, M. Tanimoto, and K. Orita, "Megakaryoblastic leukemia cell line molm-16 derived from minimally differentiated acute leukemia with myeloid/nk precursor phenotype," Leuk Res vol. 27, no. 2, pp. 165-171, 2003.
    • (2003) Leuk Res , vol.27 , Issue.2 , pp. 165-171
    • Matsuo, Y.1    Drexler, H.G.2    Kaneda, K.3    Kojima, K.4    Ohtsuki, Y.5    Hara, M.6    Yasukawa, M.7    Tanimoto, M.8    Orita, K.9
  • 34
    • 0036861259 scopus 로고    scopus 로고
    • Leukemic phase of b-cell lymphomas mimicking chronic lymphocytic leukemia and variants at presentation
    • B. Nelson, D. Variakojis, and L. C. Peterson, "Leukemic phase of b-cell lymphomas mimicking chronic lymphocytic leukemia and variants at presentation," Mod Pathol. vol. 15, no. 11, pp. 1111-1120, 2002.
    • (2002) Mod Pathol. , vol.15 , Issue.11 , pp. 1111-1120
    • Nelson, B.1    Variakojis, D.2    Peterson, L.C.3
  • 35
    • 0037245772 scopus 로고    scopus 로고
    • Genetic algorithms applied to multi-class prediction for the analysis of gene expression data
    • C. H. Ooi and Patrick Tan, "Genetic algorithms applied to multi-class prediction for the analysis of gene expression data," Bioinformatics vol. 19, no. 1, pp. 37-44, 2003.
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 37-44
    • Ooi, C.H.1    Tan, P.2
  • 36
    • 0027767544 scopus 로고
    • Translocation of cd3d gene in an acute myeloid leukemia (m5) with t(11;17)(q23;21)
    • M. Pereira, M. L. Silva, A. N. Valente, M. H. de Souza, and E. Abdelhay, "Translocation of cd3d gene in an acute myeloid leukemia (m5) with t(11;17)(q23;21)," Cancer Genet Cytogenet vol. 71, no. 2, pp. 173-175, 1993.
    • (1993) Cancer Genet Cytogenet , vol.71 , Issue.2 , pp. 173-175
    • Pereira, M.1    Silva, M.L.2    Valente, A.N.3    De Souza, M.H.4    Abdelhay, E.5
  • 38
    • 0000419450 scopus 로고    scopus 로고
    • Minimal generation gap model for gas considering both exploration and exploitation
    • H. Yamamura, M. Satoh, and S. Kobayashi, "Minimal generation gap model for gas considering both exploration and exploitation," in Iizuka'96, 1996, pp. 494-497.
    • (1996) Iizuka'96 , pp. 494-497
    • Yamamura, H.1    Satoh, M.2    Kobayashi, S.3
  • 42
    • 0033580456 scopus 로고    scopus 로고
    • Monitoring gene expression profile changes in ovarian carcinomas using cdna microarray
    • K. Wang, L. Gan, and E. Jeffery, "Monitoring gene expression profile changes in ovarian carcinomas using cdna microarray," Gene vol. 229, pp. 101-108, 1999.
    • (1999) Gene , vol.229 , pp. 101-108
    • Wang, K.1    Gan, L.2    Jeffery, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.