Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes

Genome Research

Volumn 14, Issue 7, 2004, Pages 1248-1257

  Loh, Yong Hwee ^a,b   Christoffels, Alan ^a   Brenner, Sydney ^a   Hunziker, Walter ^a   Venkatesh, Byrappa ^a  

^a INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Singapore)

^b BIOINFORMATICS INSTITUTE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

CLAUDIN;

ARTICLE; CELL ADHESION; CELL TRANSPORT; CONTROLLED STUDY; DEVELOPMENTAL STAGE; ENDOTHELIUM CELL; EPITHELIUM CELL; GENE DUPLICATION; GENE EXPRESSION PROFILING; GENE FUNCTION; MAMMAL; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN LOCALIZATION; PUFFER FISH; SPECIES DIFFERENCE; TELEOST; TIGHT JUNCTION;

ANIMALS; EVOLUTION, MOLECULAR; FISH PROTEINS; GENE DELETION; GENE DUPLICATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENOME; GENOME, HUMAN; HUMANS; MEMBRANE PROTEINS; MICE; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHYLOGENY; PREDICTIVE VALUE OF TESTS; SEQUENCE HOMOLOGY, NUCLEIC ACID; TAKIFUGU; ZEBRAFISH PROTEINS;

MAMMALIA; PISCES; TAKIFUGU; TAKIFUGU RUBRIPES; TELEOST FISH; TELEOSTEI;

EID: 3543049587     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.2400004     Document Type: Article

References (40)

1. Amasheh, S., Meiri, N., Gitter, A.H., Schoneberg, T., Mankertz, J., Schulzke, J.D., and Fromm, M. 2002. Claudin-2 expression induces cation-selective channels in tight junctions of epithelial cells. J. Cell Sci. 115: 4969-4976.
2. Amores, A., Force, A., Yan, Y.L., Joly, L., Amemiya, C., Fritz, A., Ho, R.K., Langeland, J., Prince, V., Wang, Y.L., et al. 1998. Zebrafish hox clusters and vertebrate genome revolution. Science 282: 1711-1714.
3. Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J.M., Dehal, P., Christoffels, A., Rash, S., Hoon, S., Smit, A., et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297: 1301-1310.
4. Asano, A,, Asano, K., Sasaki, H., Furuse, M., and Tsukita, S. 2003. Claudins in Caenorhabditis elegans: Their distribution and barrier function in the epithelium. Curr. Biol. 13: 1042-1046.
5. Behr, M., Riedel, D., and Schuh, R. 2003. The Claudin-like megatrachea is essential in septate junctions for the epithelial barrier function in Drosophila. Dev. Cell 5: 611-620.
6. Brandner, J.M., Kief, S., Grund, C., Rendl, M., Houdek, P., Kuhn, C., Tschachler, E., Franke, W.W., and Moll, I. 2002. Organization and formation of the tight junction system in human epidermis and cultured keratinocytes. Eur. J. Cell Biol. 81: 253-263.
7. Brenner, S., Elgar, G., Sandford, R., Macrae, A., Venkatesh, B., and Aparicio, S. 1993. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366: 265-268.
8. Christoffels, A., Koh, E.G.L., Chia, J., Brenner, S., Aparicio, S., and Venkatesh, B. 2004. Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol. Biol. Evol. 21: 1146-1151.
9. Felsenstein, J. 1989. PHYLIP - Phylogeny inference package (version 3.2). Cladistics 5: 164-166.
10. Furuse, M., Fujita, K., Hiiragi, T., Fujimoto, K., and Tsukita, S. 1998a. Claudin-1 and -2: Novel integral membrane proteins localizing at tight junctions with no sequence similarity to occludin. J. Cell Biol. 141: 1539-1550.
11. Furuse, M., Sasaki, H., Fujimoto, K., and Tsukita, S. 1998b. A single gene product, claudin-1 or -2, reconstitutes tight junction strands and recruits occludin in fibroblasts. J. Cell Biol. 143: 391-401.
12. Furuse, M., Sasaki, H., and Tsukita, S. 1999. Manner of interaction of heterogeneous claudin species within and between tight junction strands. J. Cell Biol. 147: 891-903.
13. Furuse, M., Hata, M., Furuse, K., Yoshida, Y., Haratake, A., Sugitani, Y., Noda, T., Kubo, A., and Tsukita, S. 2002. Claudin-based tight junctions are crucial for the mammalian epidermal barrier: A lesson from claudin-1-deficient mice. J. Cell Biol. 156: 1099-1111.
14. Gonzalez-Mariscal, L., Betanzos, A., Nava, P., and Jaramillo, B.E. 2003. Tight junction proteins. Prog. Biophys. Mol. Biol. 81: 1-44.
15. Gow, A., Southwood, C.M., Li, J.S., Pariali, M., Riordan, G.P., Brodie, S.E., Danias, J., Bronstein, J.M., Kachar, B., and Lazzarini, R.A. 1999. CNS myelin and Sertoli cell tight junction strands are absent in Osp/claudin-11 null mice. Cell 99: 649-659.
16. Heiskala, M., Peterson, P.A., and Yang, Y. 2001. The roles of claudin superfamily proteins in paracellular transport. Traffic 2: 93-98.
17. Inai, T., Kobayashi, J., and Shibata, Y. 1999. Claudin-1 contributes to the epithelial barrier function in MDCK cells. Eur. J. Cell Biol. 78: 849-855.
18. Itoh, M., Furuse, M., Morita, K., Kubota, K., Saitou, M., and Tsukita, S. 1999. Direct binding of three tight junction-associated MAGUKs, ZO-1, ZO-2, and ZO-3, with the COOH termini of claudins. J. Cell Biol. 147: 1351-1363.
19. Kollmar, R., Nakamura, S.K., Kappler, J.A., and Hudspeth, A.J. 2001. Expression and phylogeny of claudins in vertebrate primordia. Proc. Natl. Acad. Sci. 98: 10196-10201.
20. Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., et al. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
21. Loots, G.G., Ovcharenko, I., Pachter, L., Dubchak, I., and Rubin, E.M. 2002. rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 12: 832-839.
22. Morita, K., Furuse, M., Fujimoto, K., and Tsukita, S. 1999a. Claudin multigene family encoding four-transmembrane domain protein components of tight junction strands. Proc. Natl. Acad. Sci. 96: 511-516.
23. Morita, K., Sasaki, H., Fujimoto, K., Furuse, M., and Tsukita, S. 1999b. Claudin-11/OSP-based tight junctions of myelin sheaths in brain and Sertoli cells in testis. J. Cell Biol. 145: 579-588.
24. Muller, D., Kausalya, P.J., Claverie-Martin, F., Meij, I.C., Eggert, P., Garcia-Nieto, V., and Hunziker, W. 2003. A novel claudin 16 mutation associated with childhood hypercalciuria abolishes binding to ZO-1 and results in lysosomal mistargeting. Am. J. Hum. Genet. 73: 1293-1301.
25. 2+ resorption. Science 285: 103-106.
26. Taylor, J.S., Van de Peer, Y., Braasch, I., and Meyer, A. 2001. Comparative genomics provides evidence for an ancient genome duplication event in fish. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 356: 1661-1679.
27. Taylor, J.S., Braasch, I., Frickey, T., Meyer, A., and Van de Peer, Y. 2003. Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res 13: 382-390.
28. Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
29. Tsukita, S. and Furuse, M. 2000. Pores in the wall: Claudins constitute tight junction strands containing aqueous pores. J. Cell Biol. 149: 13-16.
30. Tsukita, S. and Furuse, M. 2002. Claudin-based barrier in simple and stratified cellular sheets. Curr. Opin. Cell Biol. 14: 531-536.
31. Tsukita, S., Furuse, M., and Itoh, M. 2001. Multifunctional strands in tight junctions. Nat. Rev. Mol. Cell. Biol. 2: 285-293.
32. Van Itallie, C., Rahner, C., and Anderson, J.M. 2001. Regulated expression of claudin-4 decreases paracellular conductance through a selective decrease in sodium permeability. J. Clin. Invest. 107: 1319-1327.
33. van Meer, G., Gumbiner, B., and Simons, K. 1986. The tight junction does not allow lipid molecules to diffuse from one epithelial cell to the next. Nature 322: 639-641.
34. Venkatesh, B., Gilligan, P., and Brenner, S. 2000. Fugu: A compact vertebrate reference genome. FEBS Lett. 476: 3-7.
35. Venter, J., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., et al. 2001. The sequence of the human genome. Science 291: 1304-1351.
36. Weber, S., Hoffmann, K., Jeck, N., Saar, K., Boeswald, M., Kuwertz-Broeking, E., Meij, I.I.C., Knoers, N.V., Cochat, P., Sulakova, T., et al. 2000. Familial hypomagnesaemia with hypercalciuria and nephrocalcinosis maps to chromosome 3q27 and is associated with mutations in the PCLN-1 gene. Eur. J. Hum. Genet. 8: 414-422.
37. Wilcox, E.R., Burton, Q.L., Naz, S., Riazuddin, S., Smith, T.N., Ploplis, B., Belyantseva, I., Ben-Yosef, T., Liburd, N.A., Morell, R.J., et al. 2001. Mutations in the gene encoding tight junction claudin-14 cause autosomal recessive deafness DFNB29. Cell 104: 165-172.
38. Williams, H., Brenner, S., and Venkatesh, B. 2002a. Characterization of the platelet-derived growth factor receptor α and c-kit genes in the pufferfish Fugu rubripes. DNA Seq. 13: 263-270.
39. Williams, H., Brenner, S., and Venkatesh, B. 2002b. Identification and analysis of additional copies of the platelet-derived growth factor receptor and colony stimulating factor1 receptor in the pufferfish Fugu rubripes. Gene 295: 255-264.
40. Yu, W.P., Brenner, S., and Venkatesh, B. 2003. Duplication, degeneration and subfunctionalization of the nested synapsin-Timp genes in Fugu. Trends Genet. 19: 180-183.