Circadian proteomics of the mouse retina

Proteomics

Volumn 7, Issue 19, 2007, Pages 3500-3508

  Tsuji, Takahiro ^a   Hirota, Tsuyoshi ^a   Takemori, Nobuaki ^b   Komori, Naoka ^b   Yoshitane, Hikari ^a   Fukuda, Masafumi ^c   Matsumoto, Hiroyuki ^b   Fukada, Yoshitaka ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF OKLAHOMA COLLEGE OF MEDICINE   (United States)

^c Hachioji shi   (Japan)

Author keywords

2 DE; Circadian rhythm; Mouse; MS; Retina

Indexed keywords

AMINO ACID; CALCIUM BINDING PROTEIN; HYBRID PROTEIN; MEMBRANE PROTEIN; N ETHYLMALEIMIDE; NEUROTRANSMITTER; RNA; VESICULAR TRANSPORT PROTEIN;

ANIMAL TISSUE; ARTICLE; CALCIUM BINDING; CELL TRANSPORT; CELL VACUOLE; CIRCADIAN RHYTHM; CONTROLLED STUDY; MALE; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOUSE; NANOTECHNOLOGY; NEUROTRANSMITTER RELEASE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN FOLDING; PROTEIN METABOLISM; PROTEIN PHOSPHORYLATION; PROTEOMICS; RETINA; RNA BINDING; TWO DIMENSIONAL ELECTROPHORESIS;

ANIMALS; BIOLOGICAL CLOCKS; CIRCADIAN RHYTHM; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; EYE PROTEINS; MALE; MICE; MICE, INBRED C57BL; RETINA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 35348946905     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700272     Document Type: Article

References (55)

1. Pittendrigh, C. S., Temporal organization: reflections of a Darwinian clock-watcher. Annu. Rev. Physiol. 1993, 55, 16-54.
2. Hastings, M. H., Reddy, A. B., Maywood, E. S., A clockwork web: circadian timing in brain and periphery, in health and disease. Nat. Rev. Neurosci. 2003, 4, 649-661.
3. Dunlap, J. C., Molecular bases for circadian clocks. Cell 1999, 96, 271-290.
4. Dowling, J. E., The Retina: An Approachable Part of the Brain, Belknap Press, Cambridge 1987.
5. LaVail, M. M., Rod outer segment disk shedding in rat retina: relationship to cyclic lighting. Science 1976, 194, 1071-1074.
6. Tosini, G., Menaker, M., Circadian rhythms in cultured mammalian retina. Science 1996, 272, 419-421.
7. Doyle, S. E., Grace, M. S., McIvor, W., Menaker, M., Circadian rhythms of dopamine in mouse retina: the role of melatonin. Vis. Neurosci. 2002, 19, 593-601.
8. Brandenburg, J., Bobbert, A. C., Eggelmeyer, F., Circadian changes in the response of the rabbits retina to flashes. Behav. Brain Res. 1983, 7, 113-123.
9. Dmitriev, A. V., Mangel, S. C., A circadian clock regulates the pH of the fish retina. J. Physiol. 2000, 522, 77-82.
10. Pierce, M. E., Sheshberadaran, H., Zhang, Z., Fox, L. E., Circadian regulation of iodopsin gene expression in embryonic photoreceptors in retinal cell culture. Neuron 1993, 10, 579-584.
11. Ko, G. Y., Ko, G. M., Dryer, S. E., Circadian phase-dependent modulation of cGMP-gated channels of cone photo-receptors by dopamine and D2 agonist. J. Neurosci. 2003, 23, 3145-3153.
12. Ko, G. Y., Ko, G. M., Dryer, S. E., Circadian regulation of cGMP-gated channels of vertebrate cone photoreceptors: role of cAMP and Ras. J. Neurosci. 2004, 24, 1296-1304.
13. Boyd, T. A., McLeod, L. E., Circadian rhythms of plasma corticoid levels, intraocular pressure and aqueous outflow facility in normal and glaucomatous eyes. Ann. NY Acad. Sci. 1964, 117, 597-613.
14. Rowland, J. M., Potter, D. E., Reiter, R. J., Circadian rhythms of plasma corticoid levels, intraocular pressure and aqueous outflow facility in normal and glaucomatous eyes. Curr. Eye Res. 1981, 1, 169-173.
15. Gekakis, N., Staknis, D., Nguyen, H. B., Davis, F. C. et al., Role of the CLOCK protein in the mammalian circadian mechanism. Science 1998, 280, 1564-1569.
16. Miyamoto, Y., Sancar, A., Vitamin B2-based blue-light photoreceptors in the retinohypothalamic tract as the photoactive pigments for setting the circadian clock in mammals. Proc. Natl. Acad. Sci. USA 1998, 26, 6097-6102.
17. Namihira, M., Honma, S., Abe, H., Masubuchi, S. et al., Circadian pattern, light responsiveness and localization of rPer1 and rPer2 gene expression in the rat retina. Neuroreport 2001, 12, 471-475.
18. Witkovsky, P., Veisenberger, E., LeSauter, J., Yan, L. et al., Cellular location and circadian rhythm of expression of the biological clock gene Period 1 in the mouse retina. J. Neurosci. 2003 23, 7670-7676.
19. Thompson, C. L., Bowes Rickman, C., Shaw, S. J., Ebright, J. N., et al., Expression of the blue-light receptor cryptochrome in the human retina. Invest. Ophthalmol. Vis. Sci. 2003, 44, 4515-4521.
20. Reinders, J., Lewandrowski, U., Moebius, J., Wagner, Y., Sickmann, A., Challenges in mass spectrometry-based proteomics. Proteomics 2004, 4, 3686-3703.
21. Anderson, L., Seilhamer, J., A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 1997, 18, 533-537.
22. Gygi, S. P., Aebersold, R., Absolute quantitation of 2-D protein spots. Methods Mol. Biol. 1999, 112, 417-421.
23. Haniu, H., Komori, N., Takemori, N., Singh, A. et al., Proteomic trajectory mapping of biological transformation: Application to developmental mouse retina. Proteomics 2006, 6, 3251-3261.
24. Matsumoto, H., Komori, N., Ocular proteomics: cataloging photoreceptor proteins by two-dimensional gel electrophoresis and mass spectrometry. Methods Enzymol. 2000, 316, 492-511.
25. Ethen, C.M., Reilly, C., Feng, X., Olsen, T. W., Ferrington, D. A., The proteome of central and peripheral retina with progression of age-related macular degeneration. Invest. Ophthalmol. Vis. Sci. 2006, 47, 2280-2290.
26. Panda, S, Antoch, M. P., Miller, B. H., Su, A. I., Coordinated transcription of key pathways in the mouse by the circadian clock. Cell 2002, 109, 307-320.
27. Peirson, S. N., Butler, J. N., Duffield, G. E., Takher, S. et al., Comparison of clock gene expression in SCN, retina, heart, and liver of mice. Biochem. Biophys. Res. Commun. 2006, 351, 800-807.
28. Jahn, R., Synaptic transmission: two players team up for a new tune. Curr. Biol. 1998, 8, R856-858.
29. Beretta, F., Sala, C., Saglietti, L., Hirling, H. et al., NSF interaction is important for direct insertion of GluR2 at synaptic sites. Mol. Cell. Neurosci. 2005, 28, 650-660.
30. May, A. P., Whitehead, S. W., Weis, W. I., Unraveling the mechanism of the vesicle transport ATPase NSF, the N-ethylmaleimide-sensitive factor. J. Biol. Chem. 2001, 276, 21991-21994.
31. Matveeva, E. A., Whiteheart, S. W., Vanaman, T. C., Slevin, J. T., Unraveling the mechanism of the vesicle transport ATPase NSF, the N-ethylmaleimide-sensitive factor. J. Biol. Chem. 2001, 276, 12174-12181.
32. Huynh, H., Bottini, N., Williams, S., Cherepanov, V. et al., Control of vesicle fusion by a tyrosine phosphatase. Nat. Cell Biol. 2004, 6, 831-839.
33. Liu, Y., Cheng, K., Gong, K., Fu, A. K., Ip, N. Y., Pctaire1 phosphorylates N-ethylmaleimide-sensitive fusion protein: implications in the regulation of its hexamerization and exocytosis. J. Biol. Chem. 2006, 281, 9852-9858.
34. Matsushita, K., Morrell, C. N., Cambien, B., Yang, S. X. et al., Nitric oxide regulates exocytosis by S-nitrosylation of N-ethylmaleimide- sensitive factor. Cell 2003, 115, 139-150.
35. Babst, M., A protein's final ESCRT. Traffic 2005, 6, 2-9.
36. Hou, V. C., Lersch, R., Gee, S. L., Ponthier, J. L. et al., Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J. 2002, 21, 6195-6204.
37. Belanger, V., Picard, N., Cermakian, N., The circadian regulation of Presenilin-2 gene expression. Chronobiol. Int. 2006, 23, 747-766.
38. Baggs, J. E., Green, C. B., Nocturnin, a deadenylase in Xenopus laevis retina: a mechanism for posttranscriptional control of circadian-related mRNA. Curr. Biol. 2003, 13, 189-198.
39. Kim, T. D., Kim, J. S., Kim, J. H., Myung, J. et al., Rhythmic serotonin N-acetyltransferase mRNA degradation is essential for the maintenance of its circadian oscillation. Mol. Cell. Biol. 2005, 25, 3232-3246.
40. Schwaller, B., Meyer, M., Schiffmann, S., 'New' functions for 'old' proteins: the role of the calcium-binding proteins calbindin D-28k, calretinin and parvalbumin, in cerebellar physiology. Studies with knockout mice. Cerebellum 2002, 1, 241-258.
41. Krizaj, D., Copenhagen, D. R., Calcium regulation in photo-receptors. Front. Biosci. 2002, 7, d2023-d2044.
42. Hamada, T., LeSauter, J., Lokshin, M., Romero, M. T. et al., Calbindin influences response to photic input in suprachiasmatic nucleus. J. Neurosci. 2003, 23, 8820-8826.
43. Ozawa, M., Muramatsu, T., Reticulocalbin, a novel endoplasmic reticulum resident Ca(2+)-binding protein with multiple EF-hand motifs and a carboxyl-terminal HDEL sequence. J. Biol. Chem. 1993, 268, 699-705.
44. Sun, F. F., McGuire, J. C., Metabolism of arachidonic acid by human neutrophils. Characterization of the enzymatic reactions that lead to the synthesis of leukotriene B4. Biochim. Biophys. Acta 1984, 794, 56-64.
45. Haeggstorm, J. Z., Leukotriene A4 hydrolase/aminopeptidase, the gatekeeper of chemotactic leukotriene B4 biosynthesis. J. Biol. Chem. 2004, 279, 50639-50642.
46. Birkle, D. L., Banzan, N. G., Light exposure stimulates arachidonic acid metabolism in intact rat retina and isolated rod outer segments. Neurochem. Res. 1989, 14, 185-190.
47. Elenich, L. A., Nandi, D., Kent, A. E., McCluskey, T. S. et al., The complete primary structure of mouse 20S proteasomes. Immunogenetics 1999, 49, 835-842.
48. Zong, C., Gomes, A. V., Drews, O., Li, X. et al., Regulation of murine cardiac 20S proteasomes: role of associating partners. Circ. Res. 2006, 99, 372-380.
49. Ivanova, T. M., Iuvone, P. M., Circadian rhythm and photic control of cAMP level in chick retinal cell cultures: a mechanism for coupling the circadian oscillator to the melatonin-synthesizing enzyme, arylalkylamine N-acetyltransferase, in photoreceptor cells. Brain Res. 2003, 991, 96-103.
50. Kubota, H., Hynes, G., Carne, A., Ashworth, A., Willison, K., Identification of six Tcp-1-related genes encoding divergent subunits of the TCP-1-containing chaperonin. Curr. Biol. 1994, 4, 89-99.
51. Farr, G. W., Scharl, E. C., Schumancher, R. J., Sondek, S., Horwhich, A. L., Chaperonin-mediated folding in the eukaryotic cytosol proceeds through rounds of release of native and nonnative forms. Cell 1997, 89, 927-937.
52. Brann, M. R., Cohen, R. V., Diurnal expression of transducin mRNA and translocation of transducin in rods of rat retina. Science 1987, 235, 585-587.
53. Dunn, A. Y., Melville, M. W., Frydman, J., Review: cellular substrates of the eukaryotic chaperonin TRiC/CCT. J. Struct. Biol. 2001, 135, 176-184.
54. Burnside, B., Ackland, N., Effects of circadian rhythm and cAMP on retinomotor movements in the green sunfish, Lepomis cyanellus. Invest. Opthalmol. Vis. Sci. 1984, 25, 539-545.
55. Reddy, A. B., Karp, N. A., Maywood, E. S., Sage, E. A. et al., Circadian orchestration of the hepatic proteome. Curr. Biol. 2006, 16, 1107-1115.