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Volumn 93, Issue 8, 2007, Pages 2861-2869

DNA organization and thermodynamics during viral packing

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPHAGE DNA; CORE PROTEIN; DNA;

EID: 35348943866     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.094771     Document Type: Article
Times cited : (49)

References (41)
  • 1
    • 0024452966 scopus 로고
    • DNA packaging in dsDNA bacteriophages
    • Black, L. W. 1989. DNA packaging in dsDNA bacteriophages. Annu. Rev. Microbiol. 43:267-292.
    • (1989) Annu. Rev. Microbiol , vol.43 , pp. 267-292
    • Black, L.W.1
  • 3
    • 0032712359 scopus 로고    scopus 로고
    • Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs
    • Baker, T. S., N. H. Olson, and S. D. Fuller. 1999. Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol. Mol. Biol. Rev. 63:862-922.
    • (1999) Microbiol. Mol. Biol. Rev , vol.63 , pp. 862-922
    • Baker, T.S.1    Olson, N.H.2    Fuller, S.D.3
  • 4
    • 0021783271 scopus 로고
    • The DNA translocating vertex of dsDNA bacteriophage
    • Bazinet, C., and J. King. 1985. The DNA translocating vertex of dsDNA bacteriophage. Annu. Rev. Microbiol. 39:109-129.
    • (1985) Annu. Rev. Microbiol , vol.39 , pp. 109-129
    • Bazinet, C.1    King, J.2
  • 6
    • 0031257723 scopus 로고    scopus 로고
    • The conformation of packaged bacteriophage T7 DNA: Informative images of negatively stained T7
    • Serwer, P., S. A. Khan, S. J. Hayes, R. H. Watson, and G. A. Griess. 1997. The conformation of packaged bacteriophage T7 DNA: Informative images of negatively stained T7. J. Struct. Biol. 120:32-43.
    • (1997) J. Struct. Biol , vol.120 , pp. 32-43
    • Serwer, P.1    Khan, S.A.2    Hayes, S.J.3    Watson, R.H.4    Griess, G.A.5
  • 7
    • 0015839714 scopus 로고
    • Mode of DNA packing within bacteriophage heads
    • Richards, K. E., R. C. Williams, and R. Calendar. 1973. Mode of DNA packing within bacteriophage heads. J. Mol. Biol. 78:255-259.
    • (1973) J. Mol. Biol , vol.78 , pp. 255-259
    • Richards, K.E.1    Williams, R.C.2    Calendar, R.3
  • 8
    • 0017657414 scopus 로고
    • DNA arrangement in isometric phage heads
    • Earnshaw, W. C., and S. C. Harrison. 1977. DNA arrangement in isometric phage heads. Nature. 268:598-602.
    • (1977) Nature , vol.268 , pp. 598-602
    • Earnshaw, W.C.1    Harrison, S.C.2
  • 9
    • 31844435708 scopus 로고    scopus 로고
    • Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus
    • Jiang, W., J. Chang, J. Jakana, P. Weigele, J. King, and W. Chiu. 2006. Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature. 439:612-616.
    • (2006) Nature , vol.439 , pp. 612-616
    • Jiang, W.1    Chang, J.2    Jakana, J.3    Weigele, P.4    King, J.5    Chiu, W.6
  • 11
    • 1242336964 scopus 로고    scopus 로고
    • Packaging doublehelical DNA into viral capsids
    • LaMarque, J. C., T. L. Le, and S. C. Harvey. 2004. Packaging doublehelical DNA into viral capsids. Biopolymers. 73:348-355.
    • (2004) Biopolymers , vol.73 , pp. 348-355
    • LaMarque, J.C.1    Le, T.L.2    Harvey, S.C.3
  • 12
    • 0032582665 scopus 로고    scopus 로고
    • Assembly of a tailed bacterial virus and its genome release studied in three dimensions
    • Tao, Y., N. H. Olson, W. Xu, D. L. Anderson, M. G. Rossmann, and T. S. Baker. 1998. Assembly of a tailed bacterial virus and its genome release studied in three dimensions. Cell. 95:431-437.
    • (1998) Cell , vol.95 , pp. 431-437
    • Tao, Y.1    Olson, N.H.2    Xu, W.3    Anderson, D.L.4    Rossmann, M.G.5    Baker, T.S.6
  • 13
    • 0017803051 scopus 로고
    • Packaging of DNA in bacteriophage heads: Some considerations on energetics
    • Riemer, S. C., and V. A. Bloomfield. 1978. Packaging of DNA in bacteriophage heads: Some considerations on energetics. Biopolymers. 17:785-794.
    • (1978) Biopolymers , vol.17 , pp. 785-794
    • Riemer, S.C.1    Bloomfield, V.A.2
  • 14
    • 0037340654 scopus 로고    scopus 로고
    • Forces and pressures in DNA packaging and release from viral capsids
    • Tzlil, S., J. T. Kindt, W. M. Gelbart, and A. Ben-Shaul. 2003. Forces and pressures in DNA packaging and release from viral capsids. Biophys. J. 84:1616-1627.
    • (2003) Biophys. J , vol.84 , pp. 1616-1627
    • Tzlil, S.1    Kindt, J.T.2    Gelbart, W.M.3    Ben-Shaul, A.4
  • 17
    • 0001533502 scopus 로고
    • Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: Hydration forces between parallel DNA double helices
    • Rau, D. C., B. Lee, and V. A. Parsegian. 1984. Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices. Proc. Natl. Acad. Sci. USA. 81:2621-2625.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 2621-2625
    • Rau, D.C.1    Lee, B.2    Parsegian, V.A.3
  • 18
    • 0026558204 scopus 로고
    • Direct measurements of the intermolecular forces between counterion-condensed DNA double helices
    • Rau, D. C., and V. A. Parsegian. 1992. Direct measurements of the intermolecular forces between counterion-condensed DNA double helices. Biophys. J. 61:246-259.
    • (1992) Biophys. J , vol.61 , pp. 246-259
    • Rau, D.C.1    Parsegian, V.A.2
  • 19
    • 0035909370 scopus 로고    scopus 로고
    • The bacteriophage φ29 portal motor can package DNA against a large internal force
    • Smith, D. E., S. J. Tans, S. B. Smith, S. Grimes, D. L. Anderson, and C. Bustamante. 2001. The bacteriophage φ29 portal motor can package DNA against a large internal force. Nature. 413:748-752.
    • (2001) Nature , vol.413 , pp. 748-752
    • Smith, D.E.1    Tans, S.J.2    Smith, S.B.3    Grimes, S.4    Anderson, D.L.5    Bustamante, C.6
  • 21
    • 22244483736 scopus 로고    scopus 로고
    • DNA packaging in bacteriophage: Is twist important?
    • Spakowitz, A. J., and Z.-G. Wang. 2005. DNA packaging in bacteriophage: Is twist important? Biophys. J. 88:3912-3923.
    • (2005) Biophys. J , vol.88 , pp. 3912-3923
    • Spakowitz, A.J.1    Wang, Z.-G.2
  • 23
    • 33745759318 scopus 로고    scopus 로고
    • Langevin dynamics simulations of genome packing in bacteriophage
    • Forrey, C., and M. Muthukumar. 2006. Langevin dynamics simulations of genome packing in bacteriophage. Biophys. J. 91:25-41.
    • (2006) Biophys. J , vol.91 , pp. 25-41
    • Forrey, C.1    Muthukumar, M.2
  • 24
    • 0018633031 scopus 로고
    • Mutants of Escherichia coli that do not contain 1,4-diaminobutane (putrescine) or spermidine
    • Hafner, E. W., C. W. Tabor, and H. Tabor. 1979. Mutants of Escherichia coli that do not contain 1,4-diaminobutane (putrescine) or spermidine. J. Biol. Chem. 254:12419-12426.
    • (1979) J. Biol. Chem , vol.254 , pp. 12419-12426
    • Hafner, E.W.1    Tabor, C.W.2    Tabor, H.3
  • 25
    • 0027481235 scopus 로고
    • Undulation-enhanced electrostatic forces in hexagonal polyelectrolyte gels
    • Odijk, T. 1993. Undulation-enhanced electrostatic forces in hexagonal polyelectrolyte gels. Biophys. Chem. 46:69-75.
    • (1993) Biophys. Chem , vol.46 , pp. 69-75
    • Odijk, T.1
  • 26
    • 0031688164 scopus 로고    scopus 로고
    • Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress
    • Odijk, T. 1998. Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress. Biophys. J. 75:1223-1227.
    • (1998) Biophys. J , vol.75 , pp. 1223-1227
    • Odijk, T.1
  • 27
    • 0037058959 scopus 로고    scopus 로고
    • Investigation of viral DNA packaging using molecular mechanics models
    • Arsuaga, J., R. K.-Z. Tan, M. Vazquez, D. Sumners, and S. C. Harvey. 2002. Investigation of viral DNA packaging using molecular mechanics models. Biophys. Chem. 101-102:475-484.
    • (2002) Biophys. Chem , vol.101-102 , pp. 475-484
    • Arsuaga, J.1    Tan, R.K.-Z.2    Vazquez, M.3    Sumners, D.4    Harvey, S.C.5
  • 28
    • 0033614014 scopus 로고    scopus 로고
    • Resolving the discrepancies among nucleic acid conformational analyses
    • Lu, X.-J., and W. Olson. 1999. Resolving the discrepancies among nucleic acid conformational analyses. J. Mol. Biol. 285:1563-1575.
    • (1999) J. Mol. Biol , vol.285 , pp. 1563-1575
    • Lu, X.-J.1    Olson, W.2
  • 29
    • 0016382119 scopus 로고
    • Flexibility of DNA
    • Schellman, J. A. 1974. Flexibility of DNA. Biopolymers. 13:217-226.
    • (1974) Biopolymers , vol.13 , pp. 217-226
    • Schellman, J.A.1
  • 31
    • 84982060514 scopus 로고
    • X-ray investigations on fibrous molecules
    • Kratky, O., and G. Porod. 1949. X-ray investigations on fibrous molecules. Rec. Trav. Chim. Pays-Bas. 68:1106-1122.
    • (1949) Rec. Trav. Chim. Pays-Bas , vol.68 , pp. 1106-1122
    • Kratky, O.1    Porod, G.2
  • 33
    • 0037436386 scopus 로고    scopus 로고
    • A second symmetry mismatch at the portal vertex of bacteriophage T7: 8-fold symmetry in the procapsid core
    • Cerritelli, M. E., B. E. Trus, C. S. Smith, N. Cheng, J. F. Conway, and A. C. Steven. 2003. A second symmetry mismatch at the portal vertex of bacteriophage T7: 8-fold symmetry in the procapsid core. J. Mol. Biol. 327:1-6.
    • (2003) J. Mol. Biol , vol.327 , pp. 1-6
    • Cerritelli, M.E.1    Trus, B.E.2    Smith, C.S.3    Cheng, N.4    Conway, J.F.5    Steven, A.C.6
  • 34
    • 0000644984 scopus 로고
    • YAMMP: Development of a molecular mechanics program using the modular programming method
    • Tan, R. K.-Z., and S. C. Harvey. 1993. YAMMP: Development of a molecular mechanics program using the modular programming method. J. Comput. Chem. 14:455-470.
    • (1993) J. Comput. Chem , vol.14 , pp. 455-470
    • Tan, R.K.-Z.1    Harvey, S.C.2
  • 36
    • 0029975088 scopus 로고    scopus 로고
    • Spider and web: Processing and visualization of images in 3d electron microscopy and related fields
    • Frank, J., M. Radermacher, P. Penczek, J. Zhu, Y. Li, M. Ladjadj, and A. Leith. 1996. Spider and web: processing and visualization of images in 3d electron microscopy and related fields. J. Struct. Biol. 116:190-199.
    • (1996) J. Struct. Biol , vol.116 , pp. 190-199
    • Frank, J.1    Radermacher, M.2    Penczek, P.3    Zhu, J.4    Li, Y.5    Ladjadj, M.6    Leith, A.7
  • 37
    • 0043130459 scopus 로고    scopus 로고
    • A director-field model of DNA packaging in viral capsids
    • Klug, W. S., and M. Ortiz. 2003. A director-field model of DNA packaging in viral capsids. J. Mech. Phys. Solids. 51:1815-1847.
    • (2003) J. Mech. Phys. Solids , vol.51 , pp. 1815-1847
    • Klug, W.S.1    Ortiz, M.2
  • 38
    • 10844240579 scopus 로고    scopus 로고
    • Three-dimensional director-field predictions of viral DNA packing arrangements
    • Klug, W. S., M. T. Feldmann, and M. Ortiz. 2004. Three-dimensional director-field predictions of viral DNA packing arrangements. Comput. Mech. 35:146-152.
    • (2004) Comput. Mech , vol.35 , pp. 146-152
    • Klug, W.S.1    Feldmann, M.T.2    Ortiz, M.3
  • 39
    • 0029561893 scopus 로고
    • DNA packaging orders the membrane of bacteriophage PRD1
    • Butcher, S. J., D. H. Bamford, and S. D. Fuller. 1995. DNA packaging orders the membrane of bacteriophage PRD1. EMBO J. 14:6078-6086.
    • (1995) EMBO J , vol.14 , pp. 6078-6086
    • Butcher, S.J.1    Bamford, D.H.2    Fuller, S.D.3
  • 41
    • 23244438898 scopus 로고    scopus 로고
    • Involvement of the portal at an early step in herpes simplex virus capsid assembly
    • Newcomb, W. W., F. L. Homa, and J. C. Brown. 2005. Involvement of the portal at an early step in herpes simplex virus capsid assembly. J. Virol. 79:10540-10546.
    • (2005) J. Virol , vol.79 , pp. 10540-10546
    • Newcomb, W.W.1    Homa, F.L.2    Brown, J.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.