A brief history of plastids and their hosts

Protist

Volumn 155, Issue 1, 2004, Pages 3-7

  Keeling, Patrick ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 1942540780     PISSN: 14344610     EISSN: None     Source Type: Journal    
DOI: 10.1078/1434461000156     Document Type: Note

References (39)

1. Archibald JM, Keeling PJ (2002) Recycled plastids: a green movement in eukaryotic evolution. Trends Genet 18: 577-584
2. Archibald JM, Keeling PJ (2004) Progress and Problems in the Origin and Evolution of Plastids. In Sapp J (ed) Microbial Evolution: Concepts and Controversies. Oxford University Press, Oxford, in press
3. Archibald JM, Longet D, Pawlowski J, Keeling PJ (2002) A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic super-group. Mol Biol Evol 20: 62-66
4. Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ (2003) Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc Natl Acad Sci USA 100: 7678-7683
5. Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF (2000) A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977
6. Bergthorsson U, Adams KL, Thomason B, Palmer JD (2003) Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424: 197-201
7. Besendahl A, Qiu YL, Lee J, Palmer JD, Bhattacharya D (2000) The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron. Curr Genet 37: 12-23
8. Bhattacharya D, Helmchen T, Bibeau C, Melkonian M (1995) Comparison of nuclear-encoded small-subunit ribosomal RNAs reveal the evolutionary position of the Glaucocystophyta. Mol Biol Evol 12: 415-420
9. Brinkmann H, Martin W (1996) Higher plant chloroplast and cytosolic 3-phosphoglycerate kinases: A case of endosymbiotic gene replacement. Plant Mol Biol 30: 65-75
10. Cavalier-Smith T (1982) The origins of plastids. Biol J Linn Soc 17: 289-306
11. Cavalier-Smith T (1999) Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol 46: 347-366
12. Delwiche CF, Kuhsel M, Palmer JD (1995) Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids. Mol Phylogenet Evol 4: 110-128
13. Durnford DG, Deane JA, Tan S, McFadden GI, Gantt E, Green BR (1999) A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution. J Mol Evol 48: 59-68
14. Fast NM, Kissinger JC, Roos DS, Keeling PJ (2001) Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol Biol Evol 18: 418-426
15. Gray MW, Spencer DF (1996) Organellar Evolution. In Roberts DM, Sharp P, Alderson G, Collins MA (eds) Evolution of Microbial Life. Cambridge University Press, Cambridge, pp 109-126
16. Hannaert V, Saavedra E, Duffieux F, Szikora J-P, Rigden DJ, Michels PAM, Opperdoes FR (2003) Plant-like traits associated with metabolism of Trypanosoma parasites. Proc Natl Acad Sci USA 100: 1067-1071
17. Harper JT, Keeling PJ (2003) Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol 20: 1730-1735
18. Helmchen TA, Bhattacharya D, Melkonian M (1995) Analyses of ribosomal RNA sequences from glaucocystophyte cyanelles provide new insights into the evolutionary relationships of plastids. J Mol Evol 41: 203-210
19. Herdman M, Stanier R (1977) The cyanelle: chloroplast or endosymbiotic procaryote? FEMS Microbiol Lett 1: 7-12
20. Jarvis P, Soll J (2001) Toc, Tic, and chloroplast protein import. Biochim Biophys Acta 1541: 64-79
21. Keeling PJ, Palmer JD (2001) Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proc Natl Acad Sci USA 98: 10745-10750
22. Keeling PJ, Deane JA, Hink-Schauer C, Douglas SE, Maier UG, McFadden GI (1999) The secondary endosymbiont of the cryptomonad Guillardia theta contains alpha-, beta-, and gamma-tubulin genes. Mol Biol Evol 16: 1308-1313
23. Köhler S, Delwiche CF, Denny PW, Tilney LG, Webster P, Wilson RJM, Palmer JD, Roos DS (1997) A plastid of probable green algal origin in apicomplexan parasites. Science 275: 1485-1489
24. Leedale GF, Vickerman K (2000) Phylum Euglenozoa. In Lee JJ, Leedale GF, Bradbury P (eds) An Illustrated Guide to the Protozoa, 2nd Edition. Society of Protozoologists, Lawrence, KA, pp 1135-1185
25. Martin W, Stoebe B, Goremykin V, Hansmann S, Hasegawa M, Kowallik KV (1998) Gene transfer to the nucleus and the evolution of chloroplasts. Nature 393: 162-165
26. Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99: 12246-12251
27. McFadden GI (1999) Plastids and protein targeting. J Eukaryot Microbiol 46: 339-346
28. McFadden GI, Gilson PR, Douglas SE, Cavalier-Smith T, Hofmann CJ, Maier UG (1997) Bonsai genomics: sequencing the smallest eukaryotic genomes. Trends Genet 13: 46-49
29. Moreira D, Le Guyader H, Phillippe H (2000) The origin of red algae and the evolution of chloroplasts. Nature 405: 69-72
30. Rogers MB, Keeling PJ (2004) Lateral transfer and recompartmentalization of Calvin Cycle enzymes of plants and algae. J Mol Evol 58: in press
31. Stiller JW, Reel DC, Johnson JC (2003) A single origin of plastids revisited: convergent evolution in organellar genome content. J Phycol 39: 95-105
32. Takishita K, Ishida K, Maruyama T (2003) An enigmatic GAPDH gene in the symbiotic dinoflagellate genus Symbiodinium and its related species (the order Suessiales): possible lateral gene transfer between two eukaryotic algae, dinoflagellate and euglenophyte. Protist 154: 443-454
33. Turner S, Pryer KM, Miao VP, Palmer JD (1999) Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J Eukaryot Microbiol 46: 327-338
34. Valentin K, Zetsche K (1990) Nucleotide sequence of the gene for the large subunit of Rubisco from Cyanophora paradoxa - phylogenetic implications. Curr Genet 18: 199-202
35. Van de Peer Y, Van der Auwera G, De Wachter R (1996) The evolution of stramenopiles and alveolates as derived by "substitution rate calibration" of small ribosomal subunit RNA. J Mol Evol 42: 201-210
36. Waller RF, Keeling PJ, van Dooren GG, McFadden GI (2003) Comment on "A green algal apicoplast ancestor". Science 301: 49
37. Williams BAP, Keeling PJ (2003) Cryptic organelles in parasitic protists and fungi. Adv Parasitol 54: 9-67
38. Yoon HS, Hackett JD, Bhattacharya D (2002a) A single origin of the peridinin-and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc Natl Acad Sci USA 99: 11724-11729
39. Yoon HS, Hackett JD, Pinto G, Bhattacharya D (2002b) A single, ancient origin of the plastid in the Chromista. Proc Natl Acad Sci USA 99: 15507-15512