Evaluation of the invader assay with the BACTEC MGIT 960 system for prompt isolation and identification of mycobacterial species from clinical specimens

Journal of Clinical Microbiology

Volumn 45, Issue 10, 2007, Pages 3316-3322

  Ichimura, Sadahiro ^a,b   Nagano, Makoto ^a   Ito, Nobuko ^a   Shimojima, Masahiro ^a   Egashira, Toru ^a   Miyamoto, Chikara ^a   Ohkusu, Kiyofumi ^b   Ezaki, Takayuki ^b  

^a Kawagoe shi   (Japan)

^b GIFU UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; GENOMIC DNA; INTERNAL TRANSCRIBED SPACER 1; RNA 16S;

ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; DEVICE; GENOTYPE; MYCOBACTERIUM; NONHUMAN; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; VALIDATION STUDY;

DNA, BACTERIAL; HUMANS; MYCOBACTERIUM; POLYMORPHISM, SINGLE NUCLEOTIDE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 35348871389     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.02289-06     Document Type: Article

References (41)

1. Alcaide, F., M. A. Benitez, J. M. Escriba, and R. Martin. 2000. Evaluation of the BACTEC MGIT 960 and the MB/BacT systems for recovery of mycobacteria from clinical specimens and for species identification by DNA AccuProbe. J. Clin. Microbiol. 38:398-401.
2. American Thoracic Society, Medical Section of the American Lung Association. 1997. Diagnosis and treatment of disease caused by nontuberculous mycobacteria. Am. J. Respir. Crit. Care Med. 156:S1-S25.
3. American Thoracic Society. 1997. Rapid diagnostic tests for tuberculosis: what is the appropriate use? Am. J. Respir. Crit. Care Med. 155:1804-1814.
4. Centers for Disease Control and Prevention. 2002. TB elimination cooperative agreement. Centers for Disease Control and Prevention, Atlanta, GA.
5. Clarridge, J. E., III. 2004. Impact of 16S rRNA gene sequence analysis of identification of bacteria on clinical microbiology and infectious diseases. Clin. Microbiol. Rev. 17:840-862.
6. da Silva Rocha, A., C. da Costa Leite, H. M. Torres, A. B. de Miranda, M. Q. Pires Lopes, W. M. Degrave, and P. N. Suffys. 1999. Use of PCR-restriction fragment length polymorphism analysis of the hsp65 gene for rapid identification of mycobacteria in Brazil. J. Microbiol. Methods 37:223-229.
7. Falkinham, J. O. 1996. Epidemiology of infection by nontuberculous mycobacteria. Clin. Microbiol. Rev. 9:177-215.
8. Goto, M., S. Oka, K. Okuzumi, S. Kimura, and K. Shimada. 1991. Evaluation of acridinium-ester-labeled DNA probes for identification of Mycobacterium tuberculosis and Mycobacterium avium-Mycobacterium intracellulare complex in culture. J. Clin. Microbiol. 29:2473-2476.
9. Harmsen, D., J. Rothganger, C. Singer, J. Albert, and M. Frosch. 1999. Intuitive hypertext-based molecular identification of micro-organisms. Lancet 353:291.
10. Harmsen, D., S. Dostal, A. Roth, S. Niemann, J. Rothgänger, M. Sammeth, J. Albert, M. Frosch, and E. Richter. 2003. RIDOM: comprehensive and public sequence database for identification of Mycobacterium species. BMC Infect. Dis. 3:26.
11. Henry, M. T., L. Inamdar, D. O'Riordain, M. Schweiger, and J. P. Watson. 2004. Nontuberculous mycobacteria in non-HIV patients: epidemiology, treatment, and response. Eur. Respir. J. 23:741-746.
12. Kasai, H., T. Kzaki, and S. Harayama. 2000. Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences. J. Clin. Microbiol. 38:301-308.
13. Katila, M.-L., P. Katila, and R. Erkinjuntti-Pekkanen. 2000. Accelerated detection and identification of mycobacteria with MGIT 960 and COBAS AMPLICOR systems. J. Clin. Microbiol. 38:960-964.
14. Katoch, V. M. 2004. Infections due to non-tuberculous mycobacteria (NTM). Indian J. Med. Res. Rev. 4:290-304.
15. Kent, P. T., and G. P. Kubica. 1985. Public health mycobacteriology: a guide for a level III laboratory. Centers for Disease Control, Atlanta, GA.
16. Kirschner, P., and E. C. Bottger. 1998. Species identification of mycobacteria using rDNA sequencing. Methods Mol. Biol. 101:349-361.
17. L. Lyamichev, V., A. Mast, J. Hall, J. Prudent, M. Kaiser, T. Takova, R. Kwiatkowski, T. Sander, M. de Arruda, D. Arco, B. Neri, and M. A. Brow. 1999. Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes. Nat. Biotechnol. 17:292-296.
18. Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Inc., New York, NY.
19. Mahairas, G. G., P. J. Sabo, M. J. Hickey, D. C. Singh, and C. K. Stover. 1996. Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis. J. Bacteriol. 178:1274-1282.
20. Mdluli, K., R. A. Slayden, Y. Zhu, S. Ramaswamy, X. Pan, D. Mead, D. D. Crane, J. M. Musser, and C. E. Barry III. 1998. Inhibition of a Mycobacterium tuberculosis-ketoacyl ACP synthase by isoniazid. Science 280:1607-1610.
21. Metchock, B. G., F. S. Nolte, and R. J. Wallace. 1999. Mycobacterium, p. 399-437. In P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, and R. H. Yolken (ed.), Manual of clinical microbiology, 7th ed. American Society for Microbiology, Washington, DC.
22. Nolte, F. S., and B. Metchcock. 1995. Mycobacterium, p. 400-437. In P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, and R. H. Yolken (ed.), Manual of clinical microbiology, 6th ed. ASM Press, Washington, DC.
23. Padilla, E., V. Gonzalez, J. M. Manterola, A. Perez, M. D. Quesada, S. Gordillo, C. Vilaplana, M. A. Pallares, S. Molinos, M. D. Sanchez, and V. Ausina. 2004. Comparative evaluation of the new version of the INNO-LiPA Mycobacteria and genotype Mycobacterium assays for identification of Mycobacterium species from MB/BacT liquid cultures artificially inoculated with mycobacterial strains. J. Clin. Microbiol. 42:3083-3088.
24. Patel, J. B., D. G. B. Leonard, X. Pan, J. M. Musser, R. E. Berman, and I. Nackamkin. 2000. Sequence-based identification of Mycobacterium species using the MicroSeq 500 16S rDNA bacterial identification system. J. Clin. Microbiol. 38:246-251.
25. Reisner, B. S., A. M. Gaston, and G. L. Woods. 1994. Use of Gen-Probe AccuProbes to identify Mycobacterium avium complex, Mycobacterium tuberculosis complex, Mycobacterium kansasii, and Mycobacterium gordonae directly from BACTEC TB broth cultures. J. Clin. Microbiol. 32:2995-2998.
26. Ringuet, H., C. Akoua-Koffi, S. Honore, A. Varnerot, V. Vincent, P. Berche, J. L. Gaillard, and C. Pierre-Audigier. 1999. hsp65 sequencing for identification of rapidly growing mycobacteria. J. Clin. Microbiol. 37:852-857.
27. Roth, A., M. Fisher, M. E. Hamid, S. Michalke, W. Ludwig, and H. Mauch. 1998. Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. J. Clin. Microbiol. 36:139-147.
28. Roth, A., U. Reischl, A. Streubel, L. Naumann, R. M. Kroppenstedt, M. Habicht, M. Fischer, and H. Mauch. 2000. Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases. J. Clin. Microbiol. 38:1094-1104.
29. Salfinger, M., and G. E. Pfyffer. 1994. The new diagnostic mycobacteriology laboratory. Eur. J. Clin. Microbiol. Infect. Dis. 13:961-979.
30. Scorpio, A., and Y. Zhang. 1996. Mutations in pncA, a gene encoding pyrazin-amidase/nicotinamidase, cause resistance to the antituberculosis drug pyrazin-amide in tubercle bacillus. Nat. Med. 2:662-667.
31. Sreevatsan, S., K. E. Stockbauer, X. Pan, B. N. Kreiswirth, S. L. Moghazeh, W. R. Jacobs, Jr., A. Telenti, and J. M. Musser. 1997. Ethambutol resistance in Mycobacterium tuberculosis: critical role of embB mutations. Antimicrob. Agents Chemother. 41:1677-1681.
32. Stackebrandt, E., W. Frederiksen, G. M. Garrity, P. A. D. Grimont, P. Kampfer, M. C. J. Maiden, X. Nesme, R. Rossella-Mora, J. Swings, H. G. Truper, A. Vauterin, A. C. Ward, and W. B. Whitman. 2002. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52:1043-1047.
33. Styrt, B. A., T. M. Shinnick, J. C. Ridderhof, J. T. Crawford, and F. C. Tenover. 1997. Turnaround times for mycobacterial cultures. J. Clin. Microbiol. 35:1041-1042.
34. Talbot, E. A., D. L. Williams, and R. Frothingham. 1997. PCR identification of Mycobacterium bovis BCG. J. Clin. Microbiol. 35:566-569.
35. Taylor, T. B., C. Patterson, Y. Hale, and W. W. Safranek. 1997. Routine use of PCR-restriction fragment length polymorphism analysis for identification of mycobacteria growing in liquid media. J. Clin. Microbiol. 35:79-85.
36. Tenover, F. C., J. T. Crawford, R. E. Huebner, L. J. Geiter, C. R. Horsburgh, Jr., and R. C. Good. 1993. The resurgence of tuberculosis: is your laboratory ready? J. Clin. Microbiol. 31:767-770.
37. Tortoli, E. 2003. Impact of genotypic studies on mycobacterial taxonomy: the new mycobacteria of the 1990s. Clin. Microbiol. Rev. 16:319-354.
38. Trueba, F., M. Fabre, and P. Saint-Blancard. 2004. Rapid Identification of Mycobacterium genavense with a new commercially available molecular test, INNO-LiPA MYCOBACTERIA v2. J. Clin. Microbiol. 42:4403-4404.
39. Turenne, C. Y., L. Tschetter, J. Wolfe, and A. Kabani. 2001. Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species. J. Clin. Microbiol. 39:3637-3648.
40. Wilson, T. M., and D. M. Collins. 1996. ahpC, a gene involved in isoniazid resistance of the Mycobacterium tuberculosis complex. Mol. Microbiol. 19:1025-1034.
41. Zhang, Y., B. Heym, B. Allen, D. Young, and S. T. Cole. 1992. The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis. Nature 358:501-503.