In vivo hexamerization and characterization of the Arabidopsis AAA ATPase CDC48A complex using Förster resonance energy transfer-fluorescence lifetime imaging microscopy and fluorescence correlation spectroscopy

Plant Physiology

Volumn 145, Issue 2, 2007, Pages 339-350

  Aker, José ^a   Hesselink, Renske ^a   Engel, Ruchira ^a   Karlova, Rumyana ^a   Borst, Jan Willem ^a   Visser, Antonie J W G ^a   De Vries, Sacco C ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEXATION; ENERGY TRANSFER; FLUORESCENCE; FLUORESCENCE MICROSCOPY; OLIGOMERIZATION; OPTICAL CORRELATION;

ARABIDOPSIS; FLUORESCENCE CORRELATION SPECTROSCOPY; FLUORESCENCE LIFETIME IMAGING MICROSCOPY; HEXAMERIZATION; RESONANCE ENERGY TRANSFER;

ENZYMES;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 35348840808     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.107.103986     Document Type: Article

References (41)

1. Aker J, Borst JW, Karlova R, de Vries S (2006) The Arabidopsis thaliana AAA protein CDC48A interacts in vivo with the somatic embryogenesis receptor-like kinase 1 receptor at the plasma membrane. J Struct Biol 156: 62-71
2. Alzayady KJ, Panning MM, Kelley GG, Wojcikiewicz RJ (2005) Involvement of the p97-Ufd1-NPl4 complex in the regulated endoplasmic reticulum-associated degradation of inositol 1,4,5-trisphosphate receptors. J Biol Chem 280: 34530-34537
3. Borst JW, Hink M, van Hoek A, Visser AJWG (2005) Effects of refractive index and viscosity on fluorescence and anisotropy decays of enhanced cyan and yellow fluorescent proteins. J Fluoresc 15: 153-160
4. Clayton AH, Walker F, Orchard SG, Henderson DF, Rothacker J, Nice EC, Burgess AW (2005) Ligand-induced dimer-tetramer transition during the activation of the cell surface epidermal growth factor receptor-A multidimensional microscopy analysis. J Biol Chem 280: 30392-30399
5. Davies JM, Tsuruta H, May AP, Weis WI (2005) Conformational changes of p97 during nucleotide hydrolysis determined by small-angle X-Ray scattering. Structure 13: 183-195
6. DeLaBarre B, Brunger AT (2003) Complete structure of p97/vasolin-containing protein reveals communication between nucleotide domains. Nat Struct Biol 10: 856-863
7. DeLaBarre B, Brunger AT (2005) Nucleotide dependent motion and mechanism of action of p97/VCP. J Mol Biol 347: 437-452
8. DeLaBarre B, Christianson JC, Kopito RR, Brunger AT (2006) Central pore residues mediate the p97/VCP activity required for ERAD. Mol Cell 22: 451-462
9. Dreveny I, Kondo H, Keij U, Shaw A, Zhang X, Freemont PS (2004) Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47. EMBO J 23: 1030-1039
10. Edward JT (1970) Molecular volumes and Stokes-Einstein equation. J Chem Educ 47: 261-265
11. Hetzer M, Meyer HH, Walther TC, Bilbao-Cortes D, Warren G, Mattaj JW (2001) Distinct AAA-ATPase p97 complexes function in discrete steps of nuclear assembly. Nat Cell Biol 3: 1086-1091
12. Hink MA, Bisseling T, Visser AJWG (2002) Imaging protein-protein interactions in living cells. Plant Mol Biol 50: 871-883
13. Huyton T (2003) The crystal structure of murine p97/VCP at 3.6 angstrom. J Struct Biol 144: 337-348
14. Indig FE, Partridge JJ, von Kobbe C, Aladjem MI, Latterich M, Bohr VA (2003) Werner syndrome protein directly binds to the AAA ATPase p97/ VCP in an ATP-dependent fashion. J Struct Biol 146: 251-259
15. Jarosch E, Taxis C, Volkwein C, Bordallo J, Finley D, Wolf DH, Sommer T (2002) Protein dislocation from the ER requires polyubiquitination and the AAA-ATPase Cdc48. Nat Cell Biol 4: 134-139
16. Karlova R, Boeren S, Russinova E, Aker J, Vervoort J, de Vries S (2006) The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 protein complex includes BRASSINOSTEROID-INSENSITIVE1. Plant Cell 18: 626-638
17. Lakowicz JR (1999) Principles of Fluorescence Spectroscopy. Kluwer Academic/Plenum Publishers, New York
18. Madeo F, Schlauer J, Zischka H, Mecke D, Frohlich KU (1998) Tyrosine phosphorylation regulates cell cycle-dependent nuclear localization of Cdc48p. Mol Biol Cell 1: 131-141
19. Meseth U, Wohland T, Rigler R, Vogel H (1999) Resolution of fluorescence correlation measurements. Biophys J 76: 1619-1631
20. Meyer HH, Shorter JG, Seemann J, Pappin D, Warren G (2000) A complex of mammalian Ufd1 and NPl4 links the AAA-ATPase, p97, to ubiquitin and nuclear transport pathways. EMBO J 19: 2181-2192
21. Mullaly JE, Chernova T, Wilkinson KD (2006) Doa1 is a Cdc48 adapter that possesses a novel ubiquitin binding domain. Mol Cell Biol 3: 822-830
22. Müller J, Piffanelli P, Devoto A, Miklis M, Elliot C, Ortmann B, Schulze-Lefert P, Panstruga R (2005) Conserved ERAD-like quality control of a plant polytopic membrane protein. Plant Cell 17: 149-163
23. Peng J, Elias JE, Thoreen CC, Licklider LJ, Gygi SP (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Proteome Res 2: 43-50
24. Pye VE, Dreveny I, Briggs LC, Sands C, Beuron F, Zhang X, Freemont PS (2006) Going through the motions: the ATPase cycle of p97. J Struct Biol 156: 12-28
25. Rancour DM, Dickey CE, Park S, Bednarek SY (2002) Characterization of AtCDC48A. Evidence for multiple membrane fusion mechanisms at the plane of cell division in plants. Plant Physiol 130: 1241-1253
26. Rancour DM, Park S, Knight SD, Bednarek SY (2004) Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J Biol Chem 279: 54264-54274
27. Rienties IM, Vink J, Borst JW, Russinova E, de Vries SC (2005) The Arabidopsis SERK1 protein interacts with the AAA ATPase AtCDC48A, the 14-3-3 GF14lambda and the PP2C phosphatase KAPP. Planta 221: 394-405
28. Rigler R, Mets U, Widengren J, Kask P (1993) Fluorescence correlation spectroscopy with high count rate and low background: analysis of translational diffusion. Eur Biophys J 22: 169-175
29. Russinova E, Borst JW, Kwaaitaal M, Caňo-Delgado A, Yin Y, Chory J, deVries SC (2004) Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1). Plant Cell 16: 3216-3229
30. Shah K, Vervoort J, de Vries SC (2001) Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation. J Biol Chem 276: 41263-41269
31. Schuberth C, Richly H, Rumpf S, Buchberger A (2004) Shp1 and Ubx2 are adaptors of CDC48 involved in ubiquitin-dependent protein degradation. EMBO Rep 8: 818-824
32. Sheen J (2001) Signal transduction in maize and Arabidopsis mesophyll protoplasts. Plant Physiol 127: 1466-1475
33. Shevchenko A, Wilm M, Vorm O, Mann M (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 68: 850-858
34. Skakun VV, Hink MA, Digris AV, Engel R, Novikov EG, Apanasovich VV, Visser AJWG (2005) Global analysis of fluorescence fluctuation data. Eur Biophys J 34: 323-334
35. Tonaco IA, Borst JW, de Vries SC, Angenent GC, Immink RGH (2005) In vivo imaging of MADS-box transcription factor interactions. J Exp Bot 57: 33-42
36. van Bokhoven H, Verver J, Wellink J, van Kammen A (1993) Protoplasts transiently expressing the 200K coding sequence of cowpea mosaic virus B-RNA support replication of M-RNA. J Gen Virol 74: 2233-2241
37. Van Kuppeveld FJM, Melchers WJG, Willems PHGM, Gadella TWJ Jr (2002) Homomultimerization of the coxsackievirus 2B protein in living cells visualized by fluorescence resonance energy transfer microscopy. J Virol 76: 9446-9456
38. Wang Q, Song C, Li CCH (2003a) Hexamerization of p97-VCP is promoted by ATP binding to the D1 domain and required for ATPase and biological activities. Biochem Biophys Res Commun 300: 253-260
39. Wang Q, Song C, Yang X, Li CCH (2003b) D1 ring is stable and nucleotide-independent, whereas D2 ring undergoesmajor conformational changes during the ATPase cycle of p97-VCP. J Biol Chem 35: 32784-32793
40. Woodman PG (2003) p97, a protein coping with multiple identities. J Cell Sci 116: 4283-4290
41. Zhang X, Shaw A, Bates PA, Newman RH, Gowen B, Orlova E, Gorman MA, Kondo H, Lally J, Leonard G, et al (2000) Structure of the AAA ATPase p97. Mol Cell 6: 1473-1484