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Volumn 45, Issue 4, 2007, Pages 376-381

Detection of Actinobacteria cultivated from environmental samples reveals bias in universal primers

Author keywords

16S rRNA gene; Actinobacteria; Oligotrophic media; Primer bias; Universal primers

Indexed keywords

BACTERIA; POLYMERASE CHAIN REACTION; RNA;

EID: 34848925453     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/j.1472-765X.2007.02198.x     Document Type: Article
Times cited : (86)

References (37)
  • 1
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • Baker, G.C., Smith, J.J. Cowan, D.A. (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55, 541 555.
    • (2003) J Microbiol Methods , vol.55 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 3
    • 0007659631 scopus 로고
    • Effect of catalase and cultural conditions on growth of Beggiatoa
    • Burton, S.D. Morita, R.Y. (1964) Effect of catalase and cultural conditions on growth of Beggiatoa. J Bacteriol 88, 1755 1761.
    • (1964) J Bacteriol , vol.88 , pp. 1755-1761
    • Burton, S.D.1    Morita, R.Y.2
  • 4
    • 0025113556 scopus 로고
    • Effects of molecular oxygen, oxidation-reduction potential, and antioxidants upon in vitro replication of Treponema pallidum subsp. pallidum
    • Cox, D.L., Riley, B., Chang, P., Sayahtaheri, S., Tassell, S. Hevelone, J. (1990) Effects of molecular oxygen, oxidation-reduction potential, and antioxidants upon in vitro replication of Treponema pallidum subsp. pallidum. Appl Environ Microbiol 56, 3063 3072.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 3063-3072
    • Cox, D.L.1    Riley, B.2    Chang, P.3    Sayahtaheri, S.4    Tassell, S.5    Hevelone, J.6
  • 5
    • 2342548750 scopus 로고    scopus 로고
    • Genetic and phenotypic traits of streptomycetes used to characterize antibiotic activities of field-collected microbes
    • Davelos, A.L., Xiao, K., Flor, J.M. Kinkel, L.L. (2004) Genetic and phenotypic traits of streptomycetes used to characterize antibiotic activities of field-collected microbes. Can J Microbiol 50, 79 89.
    • (2004) Can J Microbiol , vol.50 , pp. 79-89
    • Davelos, A.L.1    Xiao, K.2    Flor, J.M.3    Kinkel, L.L.4
  • 6
    • 0013095682 scopus 로고    scopus 로고
    • Actinomycetes, promising tools to control plant diseases and to promote plant growth
    • Doumbou, C.L., Salove, M.K.H., Crawford, D.L. Beaulieu, C. (2001) Actinomycetes, promising tools to control plant diseases and to promote plant growth. Phytoprotection 82, 85 102.
    • (2001) Phytoprotection , vol.82 , pp. 85-102
    • Doumbou, C.L.1    Salove, M.K.H.2    Crawford, D.L.3    Beaulieu, C.4
  • 7
    • 0027880709 scopus 로고
    • Towards the biological control of fungal and bacterial diseases of tomato using antagonistic Streptomyces spp
    • El-Abyad, M.S., El-Sayed, M.A., El-Shanshoury, A.R. El-Sabbagh, S.M. (1993) Towards the biological control of fungal and bacterial diseases of tomato using antagonistic Streptomyces spp. Plant Soil 149, 185 195.
    • (1993) Plant Soil , vol.149 , pp. 185-195
    • El-Abyad, M.S.1    El-Sayed, M.A.2    El-Shanshoury, A.R.3    El-Sabbagh, S.M.4
  • 8
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly, V., Rainey, F.A. Stackebrandt, E. (1995) Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl Environ Microbiol 61, 2798 2801.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 11
    • 0031842162 scopus 로고    scopus 로고
    • Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region
    • Hansen, M.C., Tolker-Nielsen, T., Givskov, M. Molin, S. (1998) Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiol Ecol 26, 141 149.
    • (1998) FEMS Microbiol Ecol , vol.26 , pp. 141-149
    • Hansen, M.C.1    Tolker-Nielsen, T.2    Givskov, M.3    Molin, S.4
  • 12
    • 0017150115 scopus 로고
    • Beneficial effect of catalase treatment on growth of Clostridium perfringens
    • Harmon, S.M. Kautter, D.A. (1976) Beneficial effect of catalase treatment on growth of Clostridium perfringens. Appl Environ Microbiol 32, 409 416.
    • (1976) Appl Environ Microbiol , vol.32 , pp. 409-416
    • Harmon, S.M.1    Kautter, D.A.2
  • 13
    • 0017614299 scopus 로고
    • Recovery of clostridia on catalase-treated plating media
    • Harmon, S.M. Kautter, D.A. (1977) Recovery of clostridia on catalase-treated plating media. Appl Environ Microbiol 33, 762 770.
    • (1977) Appl Environ Microbiol , vol.33 , pp. 762-770
    • Harmon, S.M.1    Kautter, D.A.2
  • 14
    • 33644840902 scopus 로고    scopus 로고
    • Improved template representation in cpn60 polymerase chain reaction (PCR) product libraries generated from complex templates by application of a specific mixture of PCR primers
    • Hill, J.E., Town, J.R. Hemmingsen, S.M. (2006) Improved template representation in cpn60 polymerase chain reaction (PCR) product libraries generated from complex templates by application of a specific mixture of PCR primers. Environ Microbiol 8, 741 746.
    • (2006) Environ Microbiol , vol.8 , pp. 741-746
    • Hill, J.E.1    Town, J.R.2    Hemmingsen, S.M.3
  • 15
    • 0025165561 scopus 로고
    • A medium for the isolation, enumeration, and rapid presumptive identification of injured Clostridium perfringens and Bacillus cereus
    • Hood, A.M., Tuck, A. Dane, C.R. (1990) A medium for the isolation, enumeration, and rapid presumptive identification of injured Clostridium perfringens and Bacillus cereus. J Appl Bacteriol 69, 359 372.
    • (1990) J Appl Bacteriol , vol.69 , pp. 359-372
    • Hood, A.M.1    Tuck, A.2    Dane, C.R.3
  • 16
    • 0029970177 scopus 로고    scopus 로고
    • Identifying microbial diversity in the natural environment: A molecular phylogenetic approach
    • Hugenholtz, P. Pace, N.R. (1996) Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. Tibtech 14, 190 197.
    • (1996) Tibtech , vol.14 , pp. 190-197
    • Hugenholtz, P.1    Pace, N.R.2
  • 17
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B.M. Pace, N.R. (1998a) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180, 4765 4774.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 18
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K.L. Pace, N.R. (1998b) Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180, 366 376.
    • (1998) J Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 19
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    • Janssen, P.H., Yates, P.S., Grinton, B.E., Taylor, P.M. Sait, M. (2002) Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl Environ Microbiol 68, 2391 2396.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 20
    • 0030613337 scopus 로고    scopus 로고
    • Influence of phagotrophic protistan bacterivory in determining the fate of dissolved organic matter (DOM) in a wetland microbial food web
    • Johnson, M.D. Ward, A.K. (1997) Influence of phagotrophic protistan bacterivory in determining the fate of dissolved organic matter (DOM) in a wetland microbial food web. Microb Ecol 33, 149 162.
    • (1997) Microb Ecol , vol.33 , pp. 149-162
    • Johnson, M.D.1    Ward, A.K.2
  • 21
    • 0030272892 scopus 로고    scopus 로고
    • Biological control of fungi causing alfalfa seedling damping-off with a disease-suppressive strain of Streptomyces
    • Jones, C.R. Samac, D.A. (1996) Biological control of fungi causing alfalfa seedling damping-off with a disease-suppressive strain of Streptomyces. Biol Control 7, 196 204.
    • (1996) Biol Control , vol.7 , pp. 196-204
    • Jones, C.R.1    Samac, D.A.2
  • 23
    • 0001857117 scopus 로고
    • S/23S rRNA Sequencing
    • In. ed. Stackebrandt, E. Goodfellow, M. pp. New York: John Wiley & Sons Ltd.
    • Lane, D.J. (1991) S/23S rRNA Sequencing. In Nucleic Acid Techniques in Bacterial Systematics ed. Stackebrandt, E. Goodfellow, M. pp. 115 175 New York : John Wiley & Sons Ltd.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 24
    • 0029929114 scopus 로고    scopus 로고
    • Selection and characterization of strains of Streptomyces suppressive to the potato scab pathogen
    • Liu, D., Anderson, N.A. Kinkel, L.L. (1996) Selection and characterization of strains of Streptomyces suppressive to the potato scab pathogen. Can J Microbiol 42, 487 502.
    • (1996) Can J Microbiol , vol.42 , pp. 487-502
    • Liu, D.1    Anderson, N.A.2    Kinkel, L.L.3
  • 26
    • 0033983202 scopus 로고    scopus 로고
    • Modestobacter multiseptatus gen. nov., sp. nov., a budding actinomycete from soils of the Asgard Range (Transantarctic Mountains)
    • Mevs, U., Stackebrandt, E., Schumann, P., Gallikowski, C.A. Hirsch, P. (2000) Modestobacter multiseptatus gen. nov., sp. nov., a budding actinomycete from soils of the Asgard Range (Transantarctic Mountains). Int J Syst Evol Microbiol 50, 337 346.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 337-346
    • Mevs, U.1    Stackebrandt, E.2    Schumann, P.3    Gallikowski, C.A.4    Hirsch, P.5
  • 27
    • 0033793103 scopus 로고    scopus 로고
    • Improved recoverability of microbial colonies from marine sponge samples
    • Olson, J.B., Lord, C.C. McCarthy, P.J. (2000) Improved recoverability of microbial colonies from marine sponge samples. Microb Ecol 40, 139 147.
    • (2000) Microb Ecol , vol.40 , pp. 139-147
    • Olson, J.B.1    Lord, C.C.2    McCarthy, P.J.3
  • 28
    • 0020051578 scopus 로고
    • The microaerophile Spirillium volutans: Cultivation on complex liquid and solid media
    • Padgett, P.J., Cover, W.H. Krieg, N.R. (1982) The microaerophile Spirillium volutans: cultivation on complex liquid and solid media. Appl Environ Microbiol 43, 469 477.
    • (1982) Appl Environ Microbiol , vol.43 , pp. 469-477
    • Padgett, P.J.1    Cover, W.H.2    Krieg, N.R.3
  • 29
    • 8744314922 scopus 로고    scopus 로고
    • Representative freshwater bacterioplankton isolated from Crater Lake, Oregon
    • Page, K.A., Cannon, S.A. Giovannoni, S.J. (2004) Representative freshwater bacterioplankton isolated from Crater Lake, Oregon. Appl Environ Microbiol 70, 6542 6550.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6542-6550
    • Page, K.A.1    Cannon, S.A.2    Giovannoni, S.J.3
  • 30
    • 0002715338 scopus 로고
    • Viable counts and viability
    • In. ed. Norris, J.R. Ribbions, D.W. pp. London: Academic Press.
    • Postgate, J.R. (1969) Viable counts and viability. In Methods in Microbiology ed. Norris, J.R. Ribbions, D.W. pp. 611 628 London : Academic Press.
    • (1969) Methods in Microbiology , pp. 611-628
    • Postgate, J.R.1
  • 32
    • 0141564899 scopus 로고    scopus 로고
    • New primers for the class Actinobacteria: Application to marine and terrestrial environments
    • Stach, J.E.M., Maldonado, L.A., Ward, A.C., Goodfellow, M. Bull, A.T. (2003) New primers for the class Actinobacteria: application to marine and terrestrial environments. Environ Microbiol 5, 828 841.
    • (2003) Environ Microbiol , vol.5 , pp. 828-841
    • Stach, J.E.M.1    Maldonado, L.A.2    Ward, A.C.3    Goodfellow, M.4    Bull, A.T.5
  • 33
    • 0022083127 scopus 로고
    • Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences
    • Stahl, D.A., Lane, D.J., Olsen, G.J. Pace, N.R. (1985) Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences. Appl Environ Microbiol 49, 1379 1384.
    • (1985) Appl Environ Microbiol , vol.49 , pp. 1379-1384
    • Stahl, D.A.1    Lane, D.J.2    Olsen, G.J.3    Pace, N.R.4
  • 36
  • 37
    • 0342683809 scopus 로고    scopus 로고
    • Inter- and intraspecific genetic analysis of the genus Saccharomonospora with 16S to 23S ribosomal DNA (rDNA) and 23S to 5S rDNA internally transcribed spacer sequences
    • Yoon, J.-H. (1997) Inter- and intraspecific genetic analysis of the genus Saccharomonospora with 16S to 23S ribosomal DNA (rDNA) and 23S to 5S rDNA internally transcribed spacer sequences. Int J Syst Bacteriol 47, 661 669.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 661-669
    • Yoon, J.-H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.